TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147406.4 - phase: 0 
         (310 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...   436  e-123
TC17875 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...   160  3e-40
AV424389                                                              118  1e-27
TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial...    97  5e-21
AV771599                                                               48  2e-06
TC14165                                                                45  2e-05
TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, parti...    40  7e-04
TC13507                                                                35  0.021
AV780873                                                               28  2.6
TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synt...    27  5.8
BP056084                                                               26  7.5
TC14580 weakly similar to UP|RK21_SPIOL (P24613) 50S ribosomal p...    26  9.8
TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, par...    26  9.8

>TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (44%)
          Length = 1606

 Score =  436 bits (1122), Expect = e-123
 Identities = 209/307 (68%), Positives = 253/307 (82%)
 Frame = +2

Query: 1   MIGAQALVAIPQASGSPKAYTSNIVDTSTRLQEGTISYPVSGLSATYQNNKVTIFATLTL 60
           M+GAQALVAIPQ+SGSPK YT++I +    + EG ISYP +GLSATY N+++TI+ATLTL
Sbjct: 386 MVGAQALVAIPQSSGSPKVYTTSIANYDPNMAEGNISYPHTGLSATYSNSELTIYATLTL 565

Query: 61  PNGTTSLVHVWQDGVLSSDSTPQEHSHESSHQNSKEVLDLVSGTSQAASGIGSRQRRRNT 120
           P+GTTSLVH+WQDG +S  ST Q H+  +++  +KE LDL SGT+QA S   S +RRRN 
Sbjct: 566 PSGTTSLVHLWQDGAVSG-STLQAHARGTANLQAKESLDLASGTTQAGSSGNSVRRRRNV 742

Query: 121 HGVLNAISWGILMPTGAVIARYLKVFKSADPAWFYLHITCQVSAYIVGLSGFGTGLKLGS 180
           HGVLN +SWGILMP GAVIARYLKVFKSADPAWFYLH+TCQ +AYIVG++G+GTGLKLGS
Sbjct: 743 HGVLNTVSWGILMPLGAVIARYLKVFKSADPAWFYLHVTCQTAAYIVGVAGWGTGLKLGS 922

Query: 181 DSEGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVTISISIVN 240
           DS GI Y THRAL I L  L TLQVFAL LRPNKDHK+RFYWN+YH  +GY TI ISIVN
Sbjct: 923 DSAGIEYSTHRALGITLFCLGTLQVFALLLRPNKDHKIRFYWNLYHWGIGYATIIISIVN 1102

Query: 241 VFKGFEALGDFVGDRYKNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKADNKTSDGVN 300
           +FKGF+A+   VGDRY +WK+AYIGII ALGGIAVLLE YTW++ +KR+K++N+ + G N
Sbjct: 1103IFKGFDAMEKSVGDRYDDWKNAYIGIIAALGGIAVLLEVYTWIIVLKRRKSENQMAHGAN 1282

Query: 301 GANGHGS 307
           G NG+GS
Sbjct: 1283GVNGYGS 1303


>TC17875 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (19%)
          Length = 567

 Score =  160 bits (405), Expect = 3e-40
 Identities = 71/98 (72%), Positives = 88/98 (89%)
 Frame = +1

Query: 207 ALFLRPNKDHKLRFYWNIYHHVVGYVTISISIVNVFKGFEALGDFVGDRYKNWKHAYIGI 266
           ALFLR NKDHK RFYWNIYHH++GY TI ISI+NVFKGF+ L ++VGDRY NWK+AYIGI
Sbjct: 1   ALFLRLNKDHKHRFYWNIYHHLIGYSTIIISIINVFKGFDTLENYVGDRYDNWKNAYIGI 180

Query: 267 IGALGGIAVLLEAYTWMVCMKRKKADNKTSDGVNGANG 304
           I ALGGIAVLLEAYTW++ +KR+++++KTS G+NGA+G
Sbjct: 181 IAALGGIAVLLEAYTWIIVLKRRQSESKTSHGINGAHG 294


>AV424389 
          Length = 309

 Score =  118 bits (295), Expect = 1e-27
 Identities = 60/71 (84%), Positives = 67/71 (93%), Gaps = 1/71 (1%)
 Frame = +2

Query: 1   MIGAQALVAIPQAS-GSPKAYTSNIVDTSTRLQEGTISYPVSGLSATYQNNKVTIFATLT 59
           M+GAQALVAIPQ+S GSP+AYTS+I  T+T+LQEGTISYPVSGLSA YQNN+VTIFATLT
Sbjct: 95  MVGAQALVAIPQSSDGSPRAYTSSIASTNTQLQEGTISYPVSGLSAEYQNNEVTIFATLT 274

Query: 60  LPNGTTSLVHV 70
           LPNGTTSLVHV
Sbjct: 275 LPNGTTSLVHV 307


>TC19486 similar to UP|Q9SJ74 (Q9SJ74) Expressed protein, partial (31%)
          Length = 510

 Score = 96.7 bits (239), Expect = 5e-21
 Identities = 49/134 (36%), Positives = 74/134 (54%)
 Frame = +1

Query: 175 GLKLGSDSEGITYDTHRALAIVLVTLATLQVFALFLRPNKDHKLRFYWNIYHHVVGYVTI 234
           G++LG  S G+ Y  HR L I +  L  +Q  AL  RPN+ ++ R YW  YHH VGY  +
Sbjct: 4   GIRLGELSPGVEYRLHRKLGIAVFCLGAMQTLALLFRPNERNRFRKYWKSYHHFVGYSCV 183

Query: 235 SISIVNVFKGFEALGDFVGDRYKNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKADNK 294
            +  VNVF+GFE +G      Y   K +Y   +  + G+ + LE  +W+V  ++ K D  
Sbjct: 184 VLGFVNVFQGFEVMG--ASRSYA--KLSYCLGLSTMIGVCIALEVNSWVVFCRKSKEDKM 351

Query: 295 TSDGVNGANGHGSS 308
             +G+ G++  GSS
Sbjct: 352 RREGLIGSSDKGSS 393


>AV771599 
          Length = 535

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
 Frame = -3

Query: 236 ISIVNVFKGFEALGDFVGDRYKNWKHAYI-GIIGALGGIAVLLEAYT-WMVC 285
           ISIVN+FKGF+A+   VGDRY +WK+AYI     +   IAVL+  +  W+ C
Sbjct: 533 ISIVNIFKGFDAMEKSVGDRYDDWKYAYIRDYCCSWVAIAVLVGRFIHWIPC 378


>TC14165 
          Length = 431

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +3

Query: 263 YIGIIGALGGIAVLLEAYTWMVCMKRKK 290
           YIGII ALGG+AVLLE YTW+ C++ ++
Sbjct: 3   YIGIIAALGGLAVLLEVYTWIPCLEEEE 86


>TC8982 similar to UP|Q84QW4 (Q84QW4) OJ1191_A10.2 protein, partial (10%)
          Length = 901

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
 Frame = +2

Query: 1   MIGAQALVAIPQASGSPK----AYTSNIVDTSTRLQEGTISYPVSGLSATYQNNKVTIFA 56
           M G QALVA     G  K     +  NI   S   +  + S+    LSA   +  +TIFA
Sbjct: 263 MAGTQALVAY---KGGDKNVVGVHLYNITSYSELAEVKSFSFETWDLSAEESSAAITIFA 433

Query: 57  TLTLPNGTTSLVHVWQDGVLSSDSTPQEHSHESSHQNSKEVLDLVSGTSQAASG 110
            + +P    ++  +WQ G + S     +H  +  +  +K  L +V+ T+    G
Sbjct: 434 AVKVPENADNISQIWQVGPVVSGKI-NKHDFKPENLAAKAPLSVVATTAVVGGG 592


>TC13507 
          Length = 413

 Score = 34.7 bits (78), Expect = 0.021
 Identities = 16/52 (30%), Positives = 30/52 (56%)
 Frame = +3

Query: 257 KNWKHAYIGIIGALGGIAVLLEAYTWMVCMKRKKADNKTSDGVNGANGHGSS 308
           + ++  Y+ ++  LG + ++LE  TW+V +KRK      S+  +G N +G S
Sbjct: 9   EKYRAIYLDVLLILGALVLVLEVLTWIVVLKRKYCSK--SNTYDGYNNNGQS 158


>AV780873 
          Length = 487

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +3

Query: 147 KSADPAWFYLHITCQVSAYIVGLSGFGTGLKLGSDSEGIT---YDTHR-ALAIVLVTLAT 202
           K   P W +L   C+    I+ +      L LG  SEGI    YD    A A++LV   T
Sbjct: 207 KKGRPFWMFLWDACKDLTLIILMVAAAASLALGIKSEGIEEGWYDGGSIAFAVLLVIFVT 386


>TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synthase,
           chloroplast precursor  (Citrulline--aspartate ligase) ,
           partial (57%)
          Length = 1296

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 86  SHESSHQNSKEVLDLVSGTSQAA 108
           ++ +SH+  K++L L+SGTS  A
Sbjct: 712 NYRASHRGPKQILPLISGTSTQA 644


>BP056084 
          Length = 522

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (82%)
 Frame = +3

Query: 211 RPNKDHKLRFYW 222
           + N DHKL+FYW
Sbjct: 258 KKNSDHKLKFYW 293


>TC14580 weakly similar to UP|RK21_SPIOL (P24613) 50S ribosomal protein L21,
           chloroplast precursor (CL21) (CS-L7), partial (42%)
          Length = 938

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 209 FLRPNKDHKLRFYWNIYHHVVGYVTISISIVNVF 242
           F   N+ H LRF+ N  HH   ++ +  SI+++F
Sbjct: 36  FCNCNRFHTLRFFRNPLHH---FLHLQTSILSIF 128


>TC16964 similar to UP|Q9SV20 (Q9SV20) Beta-COP-like protein, partial (15%)
          Length = 593

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +3

Query: 53  TIFATLTLPNGTTSLVHVWQDGVLSSDSTPQ----EHSHESSHQNSKEVLDLVSGTSQAA 108
           T+F++L  P  ++ +     +  +S+ S PQ      ++    Q    +    +GTSQ  
Sbjct: 66  TLFSSLVFPGSSSPI----PNSTISTPSLPQLLIRSETNGEIVQFGGALRQGNAGTSQRD 233

Query: 109 SGIGSRQRRRN 119
            GI  R+RRR+
Sbjct: 234 QGISRRKRRRS 266


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,237,548
Number of Sequences: 28460
Number of extensions: 70621
Number of successful extensions: 428
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of query: 310
length of database: 4,897,600
effective HSP length: 90
effective length of query: 220
effective length of database: 2,336,200
effective search space: 513964000
effective search space used: 513964000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)