BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147364.11 - phase: 0
(184 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8921 weakly similar to UP|AAQ89303 (AAQ89303) SWAP2, partial (6%) 40 3e-04
TC15586 weakly similar to UP|Q8LEJ2 (Q8LEJ2) Nematode resistance... 33 0.038
TC20199 weakly similar to UP|CA54_CANFA (Q28247) Collagen alpha ... 30 0.32
TC18015 30 0.32
TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, par... 30 0.32
TC12614 29 0.55
TC16925 weakly similar to UP|O22208 (O22208) bZIP family transcr... 28 0.72
AV423942 28 0.72
BP073766 28 0.94
TC18007 similar to PIR|T01245|T01245 N-acetyltransferase homolog... 28 1.2
TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-e... 27 2.1
AV419985 27 2.7
AV406344 27 2.7
TC8602 similar to UP|P93396 (P93396) Transformer-SR ribonucleopr... 27 2.7
BP066705 27 2.7
BP081200 27 2.7
BP043144 27 2.7
TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase is... 27 2.7
TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cu... 26 3.6
TC18322 similar to GB|AAP13390.1|30023714|BT006282 At5g44170 {Ar... 26 3.6
>TC8921 weakly similar to UP|AAQ89303 (AAQ89303) SWAP2, partial (6%)
Length = 607
Score = 39.7 bits (91), Expect = 3e-04
Identities = 34/73 (46%), Positives = 41/73 (55%), Gaps = 1/73 (1%)
Frame = +1
Query: 91 RTTEGPLMPRTMEGLLVPRTTEGPLVSRTREGPPVPRRMAEVQLMRR-IWCLADLQAPGV 149
RTTEGPL+P M G+L+ R +S + VP M + LM+R I L DL
Sbjct: 91 RTTEGPLIPGRMVGVLMTRG-----ISHLAD-L*VPDVM--ILLMKRGIGHLTDL*VLDA 246
Query: 150 MIAVLQGLVHGHT 162
MIAVLQG V GHT
Sbjct: 247 MIAVLQGPVRGHT 285
>TC15586 weakly similar to UP|Q8LEJ2 (Q8LEJ2) Nematode resistance
protein-like protein, partial (32%)
Length = 773
Score = 32.7 bits (73), Expect = 0.038
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 6 SHGSGRSGGGGSRRRARSRSPRRSRYR-WVGMI 37
S G G GGGGS RR R RR R+R W G +
Sbjct: 274 SRGFGAPGGGGSGRRRRREVARRRRFRCW*GRV 176
>TC20199 weakly similar to UP|CA54_CANFA (Q28247) Collagen alpha 5(IV) chain
(Fragment), partial (6%)
Length = 577
Score = 29.6 bits (65), Expect = 0.32
Identities = 17/49 (34%), Positives = 26/49 (52%)
Frame = +1
Query: 51 LPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRTTEGPLMP 99
LP + P +P++ EVP VP++ E P + E P VP + P +P
Sbjct: 172 LPALPMPDVPGIPKVPEVPGVPKIPE---VPGIPEVPKVPGIPDVPKVP 309
>TC18015
Length = 460
Score = 29.6 bits (65), Expect = 0.32
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 10 GRSGGGGSRRRARSRSPRR 28
G +GGGG RRR RSR RR
Sbjct: 334 GAAGGGGGRRRRRSRGCRR 278
>TC10011 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (62%)
Length = 684
Score = 29.6 bits (65), Expect = 0.32
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +3
Query: 2 RVTTSHGSGRSGGGGSRRRARSRSPRRSRYR 32
R SGR G SR RSRSPRR R R
Sbjct: 480 RTVPKKTSGRRGRSYSRSPVRSRSPRRDRSR 572
>TC12614
Length = 577
Score = 28.9 bits (63), Expect = 0.55
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 11 RSGGGGSRRRARSRSPRRSR 30
R GGG RRR R+R PRR R
Sbjct: 328 RRGGG*GRRRCRNRVPRRRR 269
>TC16925 weakly similar to UP|O22208 (O22208) bZIP family transcription
factor, partial (19%)
Length = 642
Score = 28.5 bits (62), Expect = 0.72
Identities = 22/79 (27%), Positives = 36/79 (44%)
Frame = +1
Query: 35 GMIIPQSDQDLILGLSLPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRTTE 94
G+ IP+ D L++P +GR G P + VP R A G + + ++ + T+
Sbjct: 364 GLAIPK---DWDSALAIPEVGRNRGQH-PHVYRVPSAKRRALGSGSTQTLKDHMKSSATD 531
Query: 95 GPLMPRTMEGLLVPRTTEG 113
G + EGL P + G
Sbjct: 532 GKMQQWFREGLAGPMLSSG 588
>AV423942
Length = 413
Score = 28.5 bits (62), Expect = 0.72
Identities = 17/37 (45%), Positives = 20/37 (53%), Gaps = 3/37 (8%)
Frame = -1
Query: 8 GSGRSGGG---GSRRRARSRSPRRSRYRWVGMIIPQS 41
GS GG GSRR R+R R R RW G+ P+S
Sbjct: 383 GSRARGGATRRGSRRVRRTRQGARGRGRWRGLHPPRS 273
>BP073766
Length = 199
Score = 28.1 bits (61), Expect = 0.94
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Frame = -2
Query: 8 GSGRSG-----GGGSRRRARSRSPRRSRYRW 33
GSGRSG GG RRR+R R YRW
Sbjct: 117 GSGRSGIRRGVRGGRRRRSR*LERRGGGYRW 25
>TC18007 similar to PIR|T01245|T01245 N-acetyltransferase homolog F16M14.6 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(66%)
Length = 456
Score = 27.7 bits (60), Expect = 1.2
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -2
Query: 8 GSGRSGGGGSRRRARSRSPRR 28
GS R GGG RR R+RSP R
Sbjct: 146 GS*REGGGARRRN*RTRSPMR 84
>TC7925 homologue to UP|RPE_SPIOL (Q43157) Ribulose-phosphate 3-epimerase,
chloroplast precursor (Pentose-5-phosphate 3-epimerase)
(PPE) (RPE) (R5P3E) , partial (94%)
Length = 1387
Score = 26.9 bits (58), Expect = 2.1
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Frame = +1
Query: 18 RRRARSRSPRRSRYRWVGMIIPQSDQDLILGLSLPVMGRMTGPL---VPRMTEVPL---- 70
R R+RSRS RSR RW L LP + R++ P +P T PL
Sbjct: 103 RSRSRSRSRSRSRTRW---------------LQLPCVPRLSNPRSMDLPPSTAKPLFSTI 237
Query: 71 --VPRMAEG 77
VP ++ G
Sbjct: 238 IPVPSLSPG 264
>AV419985
Length = 408
Score = 26.6 bits (57), Expect = 2.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 8 GSGRSGGGGSRRRARSRSPRRSRYRW 33
G+G G GG ++PR +R RW
Sbjct: 202 GAGAQGDGGRGEGGECQAPRAARLRW 125
>AV406344
Length = 176
Score = 26.6 bits (57), Expect = 2.7
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -2
Query: 13 GGGGSRRRARSRSPRRSRYRWVGMIIPQSDQDLILGLSL 51
GGGG RR+RSR+ R+ +I + ++L L L
Sbjct: 142 GGGGG*RRSRSRTFGGERHEMSKKLIKMNQHTIVLVLCL 26
>TC8602 similar to UP|P93396 (P93396) Transformer-SR ribonucleoprotein
(Fragment), partial (35%)
Length = 634
Score = 26.6 bits (57), Expect = 2.7
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 8 GSGRSGGGGSRRR---ARSRSPRRSRYR 32
G R GGGG R RSPRRS YR
Sbjct: 178 GRYRGGGGGGSGRDDYQHRRSPRRSPYR 261
>BP066705
Length = 511
Score = 26.6 bits (57), Expect = 2.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 7 HGSGRSGGGGSRRRARS 23
HG GR GGGGS A S
Sbjct: 94 HGGGRDGGGGSSPAAES 44
>BP081200
Length = 427
Score = 26.6 bits (57), Expect = 2.7
Identities = 16/29 (55%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Frame = -1
Query: 7 HGSGRS-GGGGSRRRARSRSPRRSRYRWV 34
H RS GGG+RRR RS RR R RW+
Sbjct: 337 HSGRRSRAGGGARRR*RS---RRRRSRWL 260
>BP043144
Length = 439
Score = 26.6 bits (57), Expect = 2.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 18 RRRARSRSPRRSRYRWVGMIIPQSD 42
+RR +SR+PR +RW+ + + D
Sbjct: 76 KRRRKSRNPRSEHWRWLVFVAAELD 150
>TC8405 weakly similar to UP|O04083 (O04083) Lysophospholipase isolog,
25331-24357 (At1g11090), partial (18%)
Length = 552
Score = 26.6 bits (57), Expect = 2.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 6 SHGSGRSGGGGSRRRARSRSPR 27
S G RSG G RR R RSPR
Sbjct: 341 SRGGRRSGRGRGGRRRRRRSPR 276
>TC8106 weakly similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber
hypocotyls (Arabinogalactan protein), partial (32%)
Length = 760
Score = 26.2 bits (56), Expect = 3.6
Identities = 16/29 (55%), Positives = 18/29 (61%), Gaps = 2/29 (6%)
Frame = -2
Query: 9 SGR--SGGGGSRRRARSRSPRRSRYRWVG 35
SGR S GG RRR R R+ R+R RW G
Sbjct: 237 SGRCHSRGGSCRRRCRRRA-HRNRSRWRG 154
>TC18322 similar to GB|AAP13390.1|30023714|BT006282 At5g44170 {Arabidopsis
thaliana;}, partial (41%)
Length = 427
Score = 26.2 bits (56), Expect = 3.6
Identities = 14/26 (53%), Positives = 18/26 (68%), Gaps = 4/26 (15%)
Frame = -2
Query: 8 GSGRSGGGGS----RRRARSRSPRRS 29
G G+ G GG RRR+RSR+PRR+
Sbjct: 297 GLGQ*GRGGRGPCRRRRSRSRAPRRA 220
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.141 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,882,253
Number of Sequences: 28460
Number of extensions: 38362
Number of successful extensions: 523
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of query: 184
length of database: 4,897,600
effective HSP length: 85
effective length of query: 99
effective length of database: 2,478,500
effective search space: 245371500
effective search space used: 245371500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147364.11