TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147364.1 - phase: 0 
         (200 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV779361                                                               65  1e-11
TC15409 weakly similar to GB|AAG40073.2|13265596|AF324722 AT4g15...    53  3e-08
BF177670                                                               38  0.001
TC10395 weakly similar to UP|Q93XN3 (Q93XN3) Salicylic acid-indu...    33  0.026
TC11173                                                                31  0.17
TC12284                                                                26  4.1
TC19507                                                                26  5.3
AV765201                                                               25  7.0
AI967644                                                               25  7.0
TC17794 weakly similar to PIR|T04482|T04482 ribophorin I homolog...    25  9.1
TC12378                                                                25  9.1
AV410614                                                               25  9.1
AV412834                                                               25  9.1

>AV779361 
          Length = 330

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 32/50 (64%), Positives = 36/50 (72%)
 Frame = -1

Query: 146 LGYQGNSHVRWKKVCNVFDKYCHQVAASIILSQLGSLVFLLLVVLLPILR 195
           LG     HV WKKVCNVFD +CH   AS++LS LGS  FLLL VLLP+LR
Sbjct: 327 LGTMETRHVPWKKVCNVFDNFCHPFPASVLLSLLGSAAFLLL-VLLPLLR 181


>TC15409 weakly similar to GB|AAG40073.2|13265596|AF324722 AT4g15610
           {Arabidopsis thaliana;} , partial (15%)
          Length = 570

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
 Frame = +3

Query: 34  ELVLRFLGFVLTLAAAIVVGTDKQTTIVPIKVVDSLPPLNVAVSAKWHYLSAFVYFLVAN 93
           +L+LRFL F  +L A +V+ T  QT  VP+              AK+ Y  AF+YF+ A 
Sbjct: 255 DLILRFLLFASSLVAVVVMVTSNQTEYVPL-----------PRPAKFRYSPAFIYFVAAF 401

Query: 94  AIACTYGAISML--LTLLNRGKSKVFWGTLITIFDALMVALLFSGNGAATAIGVLG 147
           +++  Y  ++ L  L+++ +   K  +      +DAL++ +L S  G A  +  +G
Sbjct: 402 SVSGLYSILTALASLSVIRKPALKTKFLLYFLFWDALILGILASATGTAGGVAYVG 569


>BF177670 
          Length = 341

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 16/62 (25%), Positives = 32/62 (50%)
 Frame = +1

Query: 126 DALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCNVFDKYCHQVAASIILSQLGSLVFL 185
           D +M  +  +   AA    +    G   ++W K+C+++ K+C+QV   +  + L SL  +
Sbjct: 85  DQVMAYITVAAVAAAAQSAMFAKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMV 264

Query: 186 LL 187
           +L
Sbjct: 265 VL 270


>TC10395 weakly similar to UP|Q93XN3 (Q93XN3) Salicylic acid-induced
           fragment 1 protein (Fragment), partial (44%)
          Length = 617

 Score = 33.5 bits (75), Expect = 0.026
 Identities = 12/64 (18%), Positives = 32/64 (49%)
 Frame = -2

Query: 127 ALMVALLFSGNGAATAIGVLGYQGNSHVRWKKVCNVFDKYCHQVAASIILSQLGSLVFLL 186
           +L+  ++ +    +  +  L  +G+    W   C  F  +CH+  ASI ++ +  + +++
Sbjct: 589 SLLTYIILAAGALSMEVLYLTEKGDPPAAWSSACGYFGPFCHKATASIAITFVAVICYVV 410

Query: 187 LVVL 190
           L ++
Sbjct: 409 LSLI 398


>TC11173 
          Length = 667

 Score = 30.8 bits (68), Expect = 0.17
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 1   MEGRGKAIIDGVEGNYGRDELAMKKPPAGGGSCELVLRFLGFVLTLAAAIVVGTDKQTTI 60
           M  + K  +DGV       ++ + + P      +++LRFL   LTL A I+V  +K+T  
Sbjct: 320 MGTQSKPDVDGVHS-----DVKVVEKPTRTRPYDVLLRFLALSLTLVATIIVAVNKETKT 156

Query: 61  V 61
           +
Sbjct: 155 I 153


>TC12284 
          Length = 364

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 176 LSQLGSLVFLLLVVLLPILRSRR 198
           LSQLG+L F+   VL+P   SRR
Sbjct: 168 LSQLGNLCFISSPVLVPASESRR 100


>TC19507 
          Length = 496

 Score = 25.8 bits (55), Expect = 5.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 80  WHYLSAFVYFLVANA---IACTYGAISMLLTLLNRGKSKVFWGTLITIFDAL 128
           W YL AFV F+V++    +   + ++S LL   +   ++  WG L  +F  L
Sbjct: 185 WFYLLAFVKFIVSDMPPFVLVMWLSLSNLLVNFSPI*TRPSWGLLFHLFRLL 340


>AV765201 
          Length = 321

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = -2

Query: 10  DGVEGNYGRDELAMKKPPAGGGSCELVLRFLGFVLTLA 47
           +GV G  GR+ +       GG  C L L+F G  + L+
Sbjct: 317 NGVGGGGGREIVGFSDGIKGGQICNLTLKFWGTPMHLS 204


>AI967644 
          Length = 244

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
 Frame = +3

Query: 77  SAKWHYLSAFVYFLVANAIACTYGA-ISMLLTLLNRGKSKVFWGTLITIFDALMVALLFS 135
           S  W  + +   FL+   + C + A +   + L   G    FWGTL +++  L   +L  
Sbjct: 18  SLLWFLIFSGTLFLLLRPLRCWF*AGVRRRVRLSGCG----FWGTLCSVWSMLSAFVLSF 185

Query: 136 GNG 138
           G+G
Sbjct: 186 GSG 194


>TC17794 weakly similar to PIR|T04482|T04482 ribophorin I homolog - barley
           (fragment) {Hordeum vulgare;}, partial (7%)
          Length = 573

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 80  WHYLSAFVYFLVANAIACTYGAISMLLTLLNRGKSKVFWGTLITIFDALM 129
           W +L    Y L+ + +       S LL LL RG+ K+ +  ++ +   LM
Sbjct: 197 WEHLLFQKYILLFHLLKVNI*Q*SKLLQLLGRGRRKLMFLLMLNLLSYLM 346


>TC12378 
          Length = 464

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 29  GGGSCELVLRFLGFVLTLAAAIVVGT 54
           G  +  +VLRF+GF+  L   I+  T
Sbjct: 344 GASNARMVLRFIGFMYILEPDIIAST 267


>AV410614 
          Length = 217

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 29 GGGSCELVLRFLGFVL 44
          GGGSC +++ +LGF L
Sbjct: 80 GGGSCSVLVAWLGFFL 33


>AV412834 
          Length = 296

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 26  PPAGGGSCELVLRFLGFVLTLAAAIVVGTDKQ 57
           PP    +C   LRF+   L L A++V+ +D++
Sbjct: 218 PPE*VSTCS*SLRFIQLTLLLCASMVLNSDRK 123


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,728,836
Number of Sequences: 28460
Number of extensions: 49356
Number of successful extensions: 351
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of query: 200
length of database: 4,897,600
effective HSP length: 86
effective length of query: 114
effective length of database: 2,450,040
effective search space: 279304560
effective search space used: 279304560
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)