TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147363.1 - phase: 0 /pseudo
         (427 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18927 similar to PIR|AI2934|AI2934 chromate transport protein ...    39  0.001
TC12853                                                                30  0.99
BP041252                                                               29  1.7
TC11755 similar to UP|Q9LIN8 (Q9LIN8) Similarity to alpha galact...    29  1.7
TC16357 weakly similar to UP|Q8DZP0 (Q8DZP0) Bacterial luciferas...    27  4.9

>TC18927 similar to PIR|AI2934|AI2934 chromate transport protein chrA
           [imported] - Agrobacterium                tumefaciens
           (strain C58, Dupont) {Agrobacterium tumefaciens;},
           partial (6%)
          Length = 561

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 271 KKAPTIGRVFALTGTQTENEDRLIIGTCYINNTPLVAIIDIGATHCFIAFDCA 323
           K+     RV+ ++G ++   D LI     +N  PL  + D GATH FI   CA
Sbjct: 161 KRPVASARVYTVSGAESHRADGLIRSVGSVNCKPLTILFDSGATHSFIDLACA 3


>TC12853 
          Length = 440

 Score = 29.6 bits (65), Expect = 0.99
 Identities = 20/91 (21%), Positives = 47/91 (50%), Gaps = 3/91 (3%)
 Frame = +3

Query: 337 MVVETPAKGSVTTSLVCLKSSLSMFGRDFEMDLVCLPL---SGMYVILGMNWFE*NHVHI 393
           +V++ P+ G     L  L  ++ +  ++  ++  CLP      +YV++   W++* H+H 
Sbjct: 156 LVIKKPSSGDHQMFLKDL--TVILIHQNSSIEFSCLPNCRGGRLYVVIQEYWYK*-HIHS 326

Query: 394 NYFSKSVYFSSVEEEIGAEFLFTKQLKQLER 424
           +  +++VYF  +  +  +  +  + L+ L R
Sbjct: 327 DMPTENVYFEKLVTKSESHHVLIQVLRYLSR 419


>BP041252 
          Length = 567

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 178 MCGRLRANRVALSPIMP---LLIRANRGWSRIDGRGRRMLMLRLSVLIVVRKAIR 229
           MCGRL      LS I+P   L+I A   WS +  + +R+  + +S+L   R+ +R
Sbjct: 22  MCGRLIPRHTKLSRILPCLRLIISAQIIWSFLMSQVQRI*SMDISILKKKREDLR 186


>TC11755 similar to UP|Q9LIN8 (Q9LIN8) Similarity to alpha galactosidase,
           partial (13%)
          Length = 583

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 178 MCGRLRANRVALSPIMP---LLIRANRGWSRIDGRGRRMLMLRLSVLIVVRKAIR 229
           MCGRL      LS I+P   L+I A   WS +  + +R+  + +S+L   R+ +R
Sbjct: 416 MCGRLIPRHTKLSRILPCLRLIISAQIIWSFLMSQVQRI*SMDISILKKKREDLR 252


>TC16357 weakly similar to UP|Q8DZP0 (Q8DZP0) Bacterial luciferase family
           protein, partial (6%)
          Length = 572

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 2/39 (5%)
 Frame = -2

Query: 316 CFIAFDCASTLGLDMSNMNGEMVV--ETPAKGSVTTSLV 352
           CF+ FDC   L  D  + NGE+    E   +G V  +L+
Sbjct: 217 CFLIFDCGVLLSKDW*DQNGELQKD*EADRRGQVQKNLL 101


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.343    0.151    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,019,044
Number of Sequences: 28460
Number of extensions: 94948
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of query: 427
length of database: 4,897,600
effective HSP length: 93
effective length of query: 334
effective length of database: 2,250,820
effective search space: 751773880
effective search space used: 751773880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 56 (26.2 bits)