TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147179.9 + phase: 1 /partial
         (375 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV411340                                                               97  3e-21
BP055441                                                               57  5e-09
CN825720                                                               53  9e-08
TC17400 similar to UP|Q9C5B2 (Q9C5B2) Translation releasing fact...    49  1e-06
TC15334                                                                43  7e-05
BP038129                                                               37  0.007
TC18087 similar to UP|Q9LF46 (Q9LF46) 2-hydroxyphytanoyl-CoA lya...    29  1.5
AV778674                                                               28  2.5
AV407489                                                               27  4.2
TC10406 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, parti...    27  5.5
TC18222 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32),...    27  7.2

>AV411340 
          Length = 391

 Score = 97.4 bits (241), Expect = 3e-21
 Identities = 51/132 (38%), Positives = 77/132 (57%)
 Frame = +2

Query: 137 GTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKG 196
           G +A  W   L+RMY R+ E+  +K   +  S  E+ G K+  +E++G   Y  L  E  
Sbjct: 2   GDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVYSKLKYESS 181

Query: 197 THRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNK 256
            HR+ R     ++G   TS + V +MP + E  + VEI  +D+E++ +R+GG GGQNVNK
Sbjct: 182 VHRVQRVPLTETQGRVHTSTATVAIMPEVDE--VEVEIDPKDIELTTARSGGAGGQNVNK 355

Query: 257 VETAVRITHIPT 268
           VETA+ + H PT
Sbjct: 356 VETAIDLFHKPT 391


>BP055441 
          Length = 394

 Score = 57.0 bits (136), Expect = 5e-09
 Identities = 26/28 (92%), Positives = 28/28 (99%)
 Frame = -1

Query: 348 SVIDGELDPFIKSYLKHKYSMTMSTSGV 375
           SV+DGELDPFIKSYLKHK+SMTMSTSGV
Sbjct: 394 SVMDGELDPFIKSYLKHKFSMTMSTSGV 311


>CN825720 
          Length = 699

 Score = 52.8 bits (125), Expect = 9e-08
 Identities = 40/170 (23%), Positives = 80/170 (46%), Gaps = 9/170 (5%)
 Frame = +1

Query: 24  LQLLEQELAKLEEEASCSSFW--------DDRAKAQQTLSTLADVKEKIKLLNDYKTQVE 75
           L ++EQ L+ +E  ++C S           + A+A + L  L+   E I  L   + +++
Sbjct: 181 LNIMEQRLSAIEHRSACLSNLLNQPEATPSEYARANKELRKLSGSVELINELRAKQKEID 360

Query: 76  DAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQLL-SGPYDKEGAVISITAG 134
             +T++  + E + +     EE     KE  + +    L  LL     D+  +++ + AG
Sbjct: 361 GLKTLMAESSEDKDMLSMATEEFGQA-KEEERRLQNMLLKSLLPKDDADERDSILEVRAG 537

Query: 135 AGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEG 184
           +GG +A  +A  + +MY ++  K  +K  VV+ +  +  G K A+  + G
Sbjct: 538 SGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAG 687


>TC17400 similar to UP|Q9C5B2 (Q9C5B2) Translation releasing factor2,
           partial (6%)
          Length = 572

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 31/57 (54%), Positives = 38/57 (66%)
 Frame = +3

Query: 219 VEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCT 275
           +EVMPLL E+S++ E          SR GGKGGQ V+KVE AV+ITH  TGVT+  T
Sbjct: 309 LEVMPLL-EKSMDTERLGPGN*FFNSREGGKGGQIVDKVEIAVQITHNQTGVTIH*T 476


>TC15334 
          Length = 537

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 19/23 (82%), Positives = 21/23 (90%)
 Frame = +1

Query: 243 FSRAGGKGGQNVNKVETAVRITH 265
           FSR GGKGGQ VN+VETA+RITH
Sbjct: 178 FSREGGKGGQTVNQVETALRITH 246


>BP038129 
          Length = 558

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +2

Query: 233 EIPEEDLEISFSRAGGKGGQNVNKVETAV 261
           +I  + + +SF+R+GG GGQNVNKV T V
Sbjct: 263 KITLDHVTVSFARSGGPGGQNVNKVNTKV 349


>TC18087 similar to UP|Q9LF46 (Q9LF46) 2-hydroxyphytanoyl-CoA lyase-like
           protein, partial (30%)
          Length = 571

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/49 (38%), Positives = 27/49 (54%)
 Frame = -2

Query: 93  GLYEEASSLIKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQ 141
           G   + S L  EL + + RF+L QLL    +   A IS+ AGAG  D++
Sbjct: 456 GDLRDISGLHGELREWLHRFDLVQLL----EVTAASISLIAGAGDHDSR 322


>AV778674 
          Length = 606

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 25/123 (20%), Positives = 55/123 (44%)
 Frame = +3

Query: 11  ASQRVKEIRESSGLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDY 70
           A Q +KE  ++  +Q LE+ +A+L +E         + +  + +     +K +  + + Y
Sbjct: 138 AEQAMKEEMDTR-IQTLEKTVARLRDEVK-------KEREDKNMERNRRLKTEKAIKDSY 293

Query: 71  KTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQLLSGPYDKEGAVIS 130
               ++ +  +   E  +   K L +E   L   +    +  ++ QLLSGP   + + I 
Sbjct: 294 NNVEQEKKQFINELERHKEALKRLSDEVEKLKIVVGNLPEGSDVAQLLSGPNVDDFSAIY 473

Query: 131 ITA 133
           ++A
Sbjct: 474 MSA 482


>AV407489 
          Length = 415

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 17/63 (26%), Positives = 33/63 (51%)
 Frame = -1

Query: 214 TSFSGVEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLR 273
           ++FS   +  +LP++S N+E P+  L+    ++      +    E AV+   IP+G+ +R
Sbjct: 322 SAFSTSLIGKILPKKSPNIEFPQSHLKFLLVQSYTI**PSWQHFEQAVQTPSIPSGMQVR 143

Query: 274 CTE 276
             E
Sbjct: 142 QEE 134


>TC10406 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, partial (57%)
          Length = 986

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 27/101 (26%), Positives = 43/101 (41%)
 Frame = +3

Query: 24  LQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVML 83
           L++L QEL K  +      F+ D  K ++ +    ++KE+I+ L D   Q E        
Sbjct: 9   LRILNQELEKFND------FYVD--KEEEFVIRFQELKERIERLKDKSYQREMYTFDYEF 164

Query: 84  TEEMESVDKGLYEEASSLIKELNKSIDRFELTQLLSGPYDK 124
           +EEM  + K L      ++   N S   F     +   YDK
Sbjct: 165 SEEMMEIRKDLVTIHGEMVLLKNYSSLNFAGLIKILKKYDK 287


>TC18222 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32), partial
           (37%)
          Length = 493

 Score = 26.6 bits (57), Expect = 7.2
 Identities = 21/83 (25%), Positives = 40/83 (47%)
 Frame = +2

Query: 23  GLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVM 82
           G+    Q+LAKL + A  +S +DD     Q L+++  +K+ I  LN   + V D + +  
Sbjct: 182 GIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSV--IKQDITALN---SAVVDLQLLSN 346

Query: 83  LTEEMESVDKGLYEEASSLIKEL 105
              E  +        +++L+ +L
Sbjct: 347 SRNESGNASADTTSHSTTLVDDL 415


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.313    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,666,365
Number of Sequences: 28460
Number of extensions: 47663
Number of successful extensions: 182
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of query: 375
length of database: 4,897,600
effective HSP length: 92
effective length of query: 283
effective length of database: 2,279,280
effective search space: 645036240
effective search space used: 645036240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)