BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147179.6 + phase: 0 /pseudo
(660 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV425482 57 7e-09
AI967551 52 3e-07
TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%) 51 5e-07
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 51 5e-07
TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, pa... 50 1e-06
TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive elemen... 49 3e-06
TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive elemen... 48 4e-06
TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 48 6e-06
TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein ... 47 7e-06
TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive elem... 47 1e-05
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 46 2e-05
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 45 4e-05
BP036840 44 6e-05
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 44 8e-05
TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive elemen... 44 8e-05
TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%) 44 8e-05
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 43 1e-04
TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protei... 42 2e-04
TC12758 similar to UP|O23110 (O23110) AP2 domain containing prot... 42 2e-04
TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Ar... 42 2e-04
>AV425482
Length = 413
Score = 57.4 bits (137), Expect = 7e-09
Identities = 44/119 (36%), Positives = 60/119 (49%), Gaps = 3/119 (2%)
Frame = +3
Query: 248 VPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKA 307
V R+ F + +S YRGVT H+ GR+EA R GQ + V++G +D E +A
Sbjct: 63 VLRRQSTGFPRGSSKYRGVTLHK-CGRWEA--------RMGQFLGKKYVYLGLFDTEIEA 215
Query: 308 ARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKH---MTRQEYVASLRRKSSGFSRGAS 363
ARAYD AA+K G TNF S YE E+ Q++ L +SG G+S
Sbjct: 216 ARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGNAPNEQQHNLDLSLGNSGSKPGSS 392
Score = 50.8 bits (120), Expect = 7e-07
Identities = 21/45 (46%), Positives = 34/45 (74%)
Frame = +3
Query: 332 YEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRQTSSTW 376
YE+++++M ++T++E+V LRR+S+GF RG+S YRGVT W
Sbjct: 9 YEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRW 143
>AI967551
Length = 466
Score = 52.0 bits (123), Expect = 3e-07
Identities = 38/114 (33%), Positives = 57/114 (49%)
Frame = +2
Query: 216 VMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRY 275
++ G I+SS+ + P + V N+ S +E + YRGV R W G++
Sbjct: 194 LLYGMITSSQQQAPIGSKV----NEASSME-------------KNKAYRGVRRRPW-GKF 319
Query: 276 EAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPI 329
A + D+ TR G +V++G +D E AA AYD AA G++ T NFPI
Sbjct: 320 AAEIRDS-------TRHGIRVWLGTFDSAEAAALAYDQAAFAMRGSSATLNFPI 460
>TC8599 homologue to UP|Q40478 (Q40478) EREBP-4, partial (26%)
Length = 632
Score = 51.2 bits (121), Expect = 5e-07
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Frame = +3
Query: 192 VQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRK 251
V + S + S S+ P LN ++ S I+S + S+Q+S S+ +
Sbjct: 189 VPSFSKPPRSSSNLSNRKPSLNISIPS--INSGLKSNISQSKETSFSHQSSSSSSSSDHQ 362
Query: 252 SVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAY 311
+ + + YRGV R W G++ A + D + RKG +V++G +D +AA+AY
Sbjct: 363 TQEEDNNKH--YRGVRRRPW-GKFAAEIRDPN-------RKGSRVWLGTFDTAIEAAKAY 512
Query: 312 DLAALKYWGTTTTTNFPIS----HYEKE 335
D AA K G+ NFP+ H E+E
Sbjct: 513 DRAAFKMRGSRAILNFPLEVGNCHEEEE 596
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 51.2 bits (121), Expect = 5e-07
Identities = 38/107 (35%), Positives = 52/107 (48%)
Frame = +1
Query: 223 SSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDN 282
S E K T ++ ++S E V K T Q YRGV R W G++ A + D
Sbjct: 67 SHEAKNSITPTHSGETQKSSSPEPEVSGKQEQTCYQGRR-YRGVRRRPW-GKFAAEIRD- 237
Query: 283 SCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPI 329
TRKG +V++G +D E AA+AYD AA + G NFP+
Sbjct: 238 ------PTRKGTRVWLGTFDTEIDAAKAYDYAAFRMRGRKAILNFPL 360
>TC15600 homologue to UP|BAD01556 (BAD01556) ERF-like protein, partial (36%)
Length = 570
Score = 50.1 bits (118), Expect = 1e-06
Identities = 34/108 (31%), Positives = 54/108 (49%)
Frame = +3
Query: 221 ISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLW 280
I+ + +Q P+T +Q + E + R QR ++YRG+ + W G++ A +
Sbjct: 300 IAHQQQQQQPST---FKRSQPHIAEKPMKR-------QRKNLYRGIRQRPW-GKWAAEIR 446
Query: 281 DNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFP 328
D RKG +V++G ++ E+AARAYD A K G NFP
Sbjct: 447 D--------PRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFP 566
>TC11381 similar to UP|Q8GZE9 (Q8GZE9) Ethylene responsive element binding
protein, partial (36%)
Length = 497
Score = 48.5 bits (114), Expect = 3e-06
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 2/154 (1%)
Frame = +3
Query: 178 PENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLD 237
P N++N+E + + + +++ LL + G S + + D
Sbjct: 48 PLTFNSSNSEFSSESSSFETNYLPFNENDPEEMLLYGMIADGANSLHHHHHHQ----MFD 215
Query: 238 SNQTSVVESAVPRKS--VDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQ 295
S+ E V + + ++ YRGV R W G++ A + D+ TR G +
Sbjct: 216 GRAMSIKEEEVSSEENGCGSSPRKEKSYRGVRRRPW-GKFAAEIRDS-------TRNGVR 371
Query: 296 VFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPI 329
V++G +D E AA AYD AA G++ NFP+
Sbjct: 372 VWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPV 473
>TC14193 similar to UP|Q8S2S7 (Q8S2S7) Ethylene responsive element binding
factor 4-like protein, partial (50%)
Length = 1128
Score = 48.1 bits (113), Expect = 4e-06
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Frame = +3
Query: 227 KQPPTTAVVLDSNQ----TSVVESAVPRKSV--DTFGQRTSI-YRGVTRHRWTGRYEAHL 279
K P +T V N T+ +AV KS T + +RGV + W GRY A +
Sbjct: 48 KAPSSTTVTKARNTAAATTAAATTAVSAKSKIHKPSNNATEVHFRGVRKRPW-GRYAAEI 224
Query: 280 WDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPIS 330
D K +V++G +D E+AARAYD AA ++ G TNFP S
Sbjct: 225 RDPG--------KKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPQS 353
>TC9504 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (35%)
Length = 633
Score = 47.8 bits (112), Expect = 6e-06
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
YRGV + W GR+ A + D K +V++G +D E+AARAYD AA G
Sbjct: 434 YRGVRKRPW-GRFAAEIRD--------PMKKARVWLGTFDSAEEAARAYDAAARALRGPK 586
Query: 323 TTTNFPISHY 332
TNFP+S +
Sbjct: 587 AKTNFPLSPF 616
>TC8031 similar to UP|Q9FR33 (Q9FR33) Ripening regulated protein DDTFR10/A
(Fragment), partial (44%)
Length = 1109
Score = 47.4 bits (111), Expect = 7e-06
Identities = 58/255 (22%), Positives = 98/255 (37%), Gaps = 50/255 (19%)
Frame = +2
Query: 164 LSMIKTWLRNQPPPPENNNNNNNE-SGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEIS 222
LS + T NQ PP + + S + S+ S SSSS ++N+
Sbjct: 164 LSPLPTPKNNQQPPQQQQQPWFQQFDEITTSNTSPTQSSSSDSSSS----SSNISLDHYF 331
Query: 223 SSENKQP--------------------------PTTAVVLDSNQTSVVESAVPRKSVDTF 256
++N+ P P+ + L T ++ P + D
Sbjct: 332 DTQNQLPLFEFEFKPHPIDLQTPVAPPQRLARKPSLQIALPKKTTEWIQFGNPDPNPDPV 511
Query: 257 GQ-------RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAAR 309
Q + YRGV + W G++ A + D + ++G +V++G +D +AA+
Sbjct: 512 VQAQPEPAEKKQHYRGVRQRPW-GKFAAEIRDPN-------KRGSRVWLGTFDTAIEAAK 667
Query: 310 AYDLAALKYWGTTTTTNFPIS----------------HYEKEVEEMKHMTRQEYVASLRR 353
AYD AA K G+ NFP+ E+EV E+K + ++E
Sbjct: 668 AYDRAAFKLRGSKAILNFPLDVAAAAASGDGESDRKRRREEEVVEVKAVVKREKTTESEV 847
Query: 354 KSSGFSRGASIYRGV 368
K + + SI+ GV
Sbjct: 848 KETPLT--PSIWTGV 886
>TC14252 homologue to UP|Q9ZR85 (Q9ZR85) Ethylene-responsive element binding
protein homolog, partial (47%)
Length = 1174
Score = 47.0 bits (110), Expect = 1e-05
Identities = 27/66 (40%), Positives = 37/66 (55%)
Frame = +1
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
+RGV + W GRY A + D K +V++G +D E+AARAYD AA ++ G
Sbjct: 199 FRGVRKRPW-GRYAAEIRDPG--------KKSRVWLGTFDTAEEAARAYDTAAREFRGPK 351
Query: 323 TTTNFP 328
TNFP
Sbjct: 352 AKTNFP 369
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 46.2 bits (108), Expect = 2e-05
Identities = 32/106 (30%), Positives = 50/106 (46%), Gaps = 8/106 (7%)
Frame = +2
Query: 232 TAVVLDSNQTSVVESAVPRKSVDTFGQ--------RTSIYRGVTRHRWTGRYEAHLWDNS 283
TA S + + KSV++ Q R + YRG+ + W G++ A + D
Sbjct: 407 TAAAKTKRSNSFSKGSTAAKSVESNEQAEKYASKKRKNQYRGIRQRPW-GKWAAEIRD-- 577
Query: 284 CRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPI 329
RKG +V++G ++ E+AARAYD A + G NFP+
Sbjct: 578 ------PRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPV 697
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 45.1 bits (105), Expect = 4e-05
Identities = 38/131 (29%), Positives = 58/131 (44%)
Frame = +3
Query: 198 SMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFG 257
++ST S SS P LN + + Q P V + +S V
Sbjct: 234 AVSTTPTSKSSSPPLNFDDVI---------QVPDQKVAGCDKKGEKKKSVVGSGGAGKKN 386
Query: 258 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALK 317
R ++YRG+ + W G++ A + D +KG +V++G + E+AARAYD AA +
Sbjct: 387 ARKNVYRGIRQRPW-GKWAAEIRD--------PQKGVRVWLGTFPTAEEAARAYDEAAKR 539
Query: 318 YWGTTTTTNFP 328
G NFP
Sbjct: 540 IRGDKAKLNFP 572
>BP036840
Length = 584
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +3
Query: 257 GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAAL 316
G R +YRGV + RW GR W + R + RK ++++G + E AA+AYD+AA
Sbjct: 69 GTRHPVYRGVRKRRW-GR-----WVSEIR---EPRKKSRIWLGSFPVPEMAAKAYDVAAY 221
Query: 317 KYWGTTTTTNFP 328
G NFP
Sbjct: 222 CLKGRKAQLNFP 257
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 43.9 bits (102), Expect = 8e-05
Identities = 26/66 (39%), Positives = 35/66 (52%)
Frame = +1
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
+RGV + W GR+ A + D K +V++G +D E AARAYD AA + G
Sbjct: 241 FRGVRKRPW-GRFAAEIRD--------PWKKARVWLGTFDSAEDAARAYDAAARSFRGPK 393
Query: 323 TTTNFP 328
TNFP
Sbjct: 394 AKTNFP 411
>TC10014 similar to UP|Q8LLR3 (Q8LLR3) Ethylene-responsive element binding
protein 1, partial (33%)
Length = 580
Score = 43.9 bits (102), Expect = 8e-05
Identities = 25/66 (37%), Positives = 35/66 (52%)
Frame = +3
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
+RGV R W G++ A + D + G +V++G Y+ EE+A AYD AA K G
Sbjct: 297 FRGVRRRPW-GKFAAEIRDPK-------KNGARVWLGTYETEEEAGLAYDRAAFKIRGRK 452
Query: 323 TTTNFP 328
NFP
Sbjct: 453 AKLNFP 470
>TC13128 similar to AAS46630 (AAS46630) At5g21960, partial (40%)
Length = 512
Score = 43.9 bits (102), Expect = 8e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +2
Query: 260 TSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYW 319
+SIYRGV + +W G+Y + + + R+ ++++G YD EKAARA+D A
Sbjct: 167 SSIYRGVRKRKW-GKYVSEIRLPNSRQ--------RIWLGSYDSAEKAARAFDAAMFCLR 319
Query: 320 GTTTTTNFP 328
G + NFP
Sbjct: 320 GRSGRFNFP 346
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 43.1 bits (100), Expect = 1e-04
Identities = 29/77 (37%), Positives = 37/77 (47%)
Frame = +2
Query: 252 SVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAY 311
S + R YRGV + W GRY A + D K +V++G +D E+AA AY
Sbjct: 152 SSSSSASREGHYRGVRKRPW-GRYAAEIRD--------PWKKTRVWLGTFDTPEEAALAY 304
Query: 312 DLAALKYWGTTTTTNFP 328
D AA G TNFP
Sbjct: 305 DGAARSLRGAKAKTNFP 355
>TC13814 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(20%)
Length = 535
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +2
Query: 259 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKY 318
R ++YRG+ + W G++ A + D RKG +V +G ++ E+AA+AYD AA +
Sbjct: 326 RKNLYRGIRQRPW-GKWAAEIRD--------PRKGVRVGLGTFNTAEEAAQAYDDAAKRI 478
Query: 319 WGTTTTTNFP 328
G NFP
Sbjct: 479 RGDKAKLNFP 508
>TC12758 similar to UP|O23110 (O23110) AP2 domain containing protein RAP2.8
(Fragment), partial (25%)
Length = 577
Score = 42.4 bits (98), Expect = 2e-04
Identities = 34/131 (25%), Positives = 65/131 (48%), Gaps = 3/131 (2%)
Frame = +2
Query: 200 STGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQR 259
S ++S + L+A++ ++S PP T + S ++V+++ R
Sbjct: 167 SCTDETSITSDSLSASITPAKLSPP----PPNTLCRVGSGASTVIDAECCGGGPGEAESR 334
Query: 260 T---SIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAAL 316
S Y+GV GR+ A +++ K ++V++G +++E++AARAYD+AA
Sbjct: 335 KLPPSKYKGVVPQP-NGRWGAQIYE----------KHQRVWLGTFNEEDEAARAYDIAAQ 481
Query: 317 KYWGTTTTTNF 327
++ G TNF
Sbjct: 482 RFRGKDAVTNF 514
>TC14917 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;}, partial (17%)
Length = 1051
Score = 42.4 bits (98), Expect = 2e-04
Identities = 24/66 (36%), Positives = 37/66 (55%)
Frame = +3
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
YRGV + W G++ A + D K +V++G ++ E+AARAYD A+L++ G
Sbjct: 210 YRGVRQRPW-GKWAAEIRDPF--------KAARVWLGTFNTAEEAARAYDQASLRFRGNK 362
Query: 323 TTTNFP 328
NFP
Sbjct: 363 AKLNFP 380
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,955,256
Number of Sequences: 28460
Number of extensions: 210968
Number of successful extensions: 1751
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 1505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1675
length of query: 660
length of database: 4,897,600
effective HSP length: 96
effective length of query: 564
effective length of database: 2,165,440
effective search space: 1221308160
effective search space used: 1221308160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147179.6