TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147179.10 - phase: 1 /pseudo
         (254 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14509 similar to UP|FABG_CUPLA (P28643) 3-oxoacyl-[acyl-carrie...    48  2e-06
BP047669                                                               39  9e-04
TC15724 similar to UP|Q9LHT0 (Q9LHT0) Short chain alcohol dehydr...    39  9e-04
TC8695 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (18%)      30  0.40
TC19325 homologue to UP|AAR86689 (AAR86689) Fructose-bisphosphat...    29  0.90
BP040042                                                               27  3.4
AV407517                                                               27  3.4
AV774918                                                               27  4.4
TC15281 similar to UP|Q8LJR2 (Q8LJR2) Alcohol dehydrogenase 1 (F...    26  5.8
TC15965 homologue to UP|Q8S902 (Q8S902) Syringolide-induced prot...    26  7.6
TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP...    26  7.6
AU251673                                                               26  7.6

>TC14509 similar to UP|FABG_CUPLA (P28643) 3-oxoacyl-[acyl-carrier protein]
           reductase, chloroplast precursor  (3-ketoacyl-acyl
           carrier protein reductase) , partial (47%)
          Length = 764

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 35/130 (26%), Positives = 55/130 (41%)
 Frame = +3

Query: 88  DVNVFGTITLTRLLTPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHSLRS 147
           D+N+ G    T+     M++  KG  + ++S  G     GQA YSA+K  + G   ++  
Sbjct: 39  DINLTGVFLCTQAAAKIMMKNRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAK 218

Query: 148 ELCQKGIQVTVVCPGPIETANNSGSQVPSEKRVSAEKCVELTIIAATHGLKEAWISYQPV 207
           E   +GI V  V PG I       S + ++     EK +  TI    +G  E        
Sbjct: 219 EYSSRGITVNAVAPGFI------ASDMTAKLGNDIEKKILETIPLGRYGQPEEVAGLVEF 380

Query: 208 LAVMYLVQYM 217
           LA+     Y+
Sbjct: 381 LALNQAASYI 410


>BP047669 
          Length = 544

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +1

Query: 44  RKVVDEAESLFPDSGVDYMIHNAAYERPKS-SVLDVTEESLKATFDVNVFGTITLTRLLT 102
           +  VD A S +    +D M +NA      + S+L  ++E  K  FDVNV+G     +   
Sbjct: 238 KNAVDMAVSKY--GKLDIMYNNAGITGDLNLSILASSDECFKRVFDVNVYGAFLGAKHAA 411

Query: 103 PFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHSL 145
             M+   +G  +  SS A          Y+ASK+A+ G   SL
Sbjct: 412 RVMIPAKRGVILFTSSIASILGGEAPHGYTASKHAVLGLMKSL 540


>TC15724 similar to UP|Q9LHT0 (Q9LHT0) Short chain alcohol
           dehydrogenase-like, partial (81%)
          Length = 1014

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 26/96 (27%), Positives = 40/96 (41%)
 Frame = +2

Query: 72  KSSVLDVTEESLKATFDVNVFGTITLTRLLTPFMLRRGKGHFVVMSSAAGKTPAPGQAVY 131
           +   ++ T E        N+     L++L  P +   G G  V +SS A        AVY
Sbjct: 392 RKPTIEYTAEEYSKLMSTNLDSAHHLSQLAYPLLKASGNGSIVFISSVAALAHVGSGAVY 571

Query: 132 SASKYALNGYFHSLRSELCQKGIQVTVVCPGPIETA 167
           +ASK A+N     L  E  +  I+   V P   +T+
Sbjct: 572 AASKAAINQLTKYLACEWAKDNIRSNSVAPWYTKTS 679


>TC8695 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (18%)
          Length = 659

 Score = 30.0 bits (66), Expect = 0.40
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 80  EESLKATFDVNVFGTITLTRLLTPFMLR 107
           ++ LK  FDV+ F   T+T+LLTP  ++
Sbjct: 241 DDKLKELFDVDSFNGFTVTKLLTPHFIK 324


>TC19325 homologue to UP|AAR86689 (AAR86689) Fructose-bisphosphate aldolase 
           , partial (49%)
          Length = 597

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -1

Query: 97  LTRLLTPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASKYALNGYFHSLRSELCQK---- 152
           L  + +  ML R      V+SSAA K P PG A+Y A   + + YF + ++++ QK    
Sbjct: 219 LASMFSTLMLARRLPMVPVLSSAA-KIPLPGVAMYLAFFISSSAYFPT-KADMVQKVLDG 46

Query: 153 GIQVT 157
           G Q+T
Sbjct: 45  GKQIT 31


>BP040042 
          Length = 512

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 24/89 (26%), Positives = 36/89 (39%)
 Frame = -2

Query: 129 AVYSASKYALNGYFHSLRSELCQKGIQVTVVCPGPIETANNSGSQVPSEKRVSAEKCVEL 188
           A YSA+K  + G   ++  E   +GI V  V PG I       S + ++     EK +  
Sbjct: 511 ANYSAAKAGVIGLTKTVAKEYSSRGITVNAVAPGFI------ASDMTAKLGNDIEKKILE 350

Query: 189 TIIAATHGLKEAWISYQPVLAVMYLVQYM 217
           TI    +G  E        LA+     Y+
Sbjct: 349 TIPLGRYGQPEEVAGLVEFLALNQAASYI 263


>AV407517 
          Length = 424

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 15/43 (34%), Positives = 19/43 (43%), Gaps = 6/43 (13%)
 Frame = +3

Query: 5   WCQSWNWGNSSSTTCKFR------GQVNTICKG*S*PKPSKVT 41
           W ++W  GNS   TC  R         N   +G S PK +K T
Sbjct: 261 WAKNWEEGNSGLPTCALRIPLAISTPANRFSRGSSFPKLTKKT 389


>AV774918 
          Length = 541

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 175 PSEKRVSAEKCVELTIIAATHGLKEAWISYQPVLAVMYLV 214
           PS K +SAE+C+ L+ +   H  K   +       VMYL+
Sbjct: 168 PSLKYLSAEECISLSFLE*KHVTKAG*VLTCYAFFVMYLI 49


>TC15281 similar to UP|Q8LJR2 (Q8LJR2) Alcohol dehydrogenase 1 (Fragment),
           partial (50%)
          Length = 785

 Score = 26.2 bits (56), Expect = 5.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 7   QSWNWGNSSSTTC 19
           +SWNW NSS T C
Sbjct: 434 RSWNWRNSSLTLC 472


>TC15965 homologue to UP|Q8S902 (Q8S902) Syringolide-induced protein 19-1-5,
           partial (86%)
          Length = 1021

 Score = 25.8 bits (55), Expect = 7.6
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -2

Query: 162 GPIETA----NNSGSQVPSEKRVSAEKCVELTIIAATHGLKEAWISYQPVLAVMYLVQYM 217
           GP ET+    NN  S   S  + +    +  T++ ATH ++++W        +M+L Q  
Sbjct: 897 GPEETSWYHCNNCISCNSSAPKATCLDLLNPTLVTATHWMRQSW-----NCKMMFLTQLN 733

Query: 218 PTIGYW 223
               YW
Sbjct: 732 EHKHYW 715


>TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP1, partial
           (21%)
          Length = 635

 Score = 25.8 bits (55), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 1   FLDYWCQSWNWGNSSSTTCK 20
           +L +WC+S +   SS+TTC+
Sbjct: 267 WLRWWCRSCSCWRSSTTTCR 208


>AU251673 
          Length = 413

 Score = 25.8 bits (55), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 81  ESLKATFDVNVFGTITLTRLLTPFMLRRGKGHFV 114
           E L  T D+N +    LT LLT    RRG G ++
Sbjct: 357 EDLDPTTDLNKYSLSPLTNLLTRSSSRRG*GTYL 256


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,521,334
Number of Sequences: 28460
Number of extensions: 57819
Number of successful extensions: 290
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of query: 254
length of database: 4,897,600
effective HSP length: 88
effective length of query: 166
effective length of database: 2,393,120
effective search space: 397257920
effective search space used: 397257920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)