BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.5 + phase: 0 /pseudo
(676 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 32 0.33
AV780619 32 0.44
TC19368 weakly similar to UP|BAD03057 (BAD03057) RNA polymerase ... 32 0.44
TC10495 31 0.75
AV416122 31 0.75
TC13367 similar to UP|Q84W12 (Q84W12) At4g16450, partial (91%) 30 1.3
TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase , com... 30 1.3
TC11138 homologue to UP|PURA_ARATH (Q96529) Adenylosuccinate syn... 30 1.3
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 30 1.7
TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO... 30 1.7
AV407983 30 1.7
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 29 2.2
TC15656 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ar... 29 2.2
BP046732 29 2.2
TC14327 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2G... 29 2.8
TC10353 weakly similar to UP|Q9FKY7 (Q9FKY7) Genomic DNA, chromo... 28 3.7
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 28 4.8
CB829188 28 4.8
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 28 4.8
AV428671 28 6.3
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein
1 (NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 32.0 bits (71), Expect = 0.33
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +1
Query: 25 KPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPV 60
KPK EE L P++ PPL+ ++T P L+ P P+
Sbjct: 28 KPKNEE-QLKPQAHTPPLSPSQTNPTTTTLSLPPPL 132
>AV780619
Length = 567
Score = 31.6 bits (70), Expect = 0.44
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 12 PRVSRFAPKSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHEPNASVKTD 71
P+ + F P SSK KP + + +S PPPL+ E P P+ + V D
Sbjct: 313 PQANEFPPNSSKSKPDYKVNNTNNESIPPPLSEGNIVGTEKHRR*PDPIMSKATHKVGED 492
Query: 72 AE 73
+
Sbjct: 493 GQ 498
>TC19368 weakly similar to UP|BAD03057 (BAD03057) RNA polymerase II complex
component SRB7 protein-like, partial (17%)
Length = 557
Score = 31.6 bits (70), Expect = 0.44
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = -3
Query: 499 EEKENLKVL*QTVVSTMLFLHQQILIHGQQVWVKILLGA*PCQVKLVMLCQLPSRSFFKL 558
E K ++K+ * TVV L LHQQ H Q + ++ L QV+ ++ C ++ F L
Sbjct: 210 EAKIHVKMS*-TVVLVRLQLHQQ---HKQLIDIRFL------QVQTIIRCL--TKQFLNL 67
Query: 559 TKFAVCSFQLICQEL 573
F +CSFQL+ + L
Sbjct: 66 M*FLLCSFQLLLKFL 22
>TC10495
Length = 909
Score = 30.8 bits (68), Expect = 0.75
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 20 KSSKFKPKKEEPSLVPKSEPPPLASAKTEP-QEIDLTAPTPVKHEPNASVKTDAESKIEG 78
K +K K K EP+ P PPP A+A P +EI+ P P + + VK ES+ E
Sbjct: 105 KGTKRKTKHTEPNHAP---PPPEAAAAAPPSEEINDQPPKPPRAKRVRRVK--PESEPEY 269
Query: 79 KVDSRNVD 86
D RN++
Sbjct: 270 FEDKRNLE 293
>AV416122
Length = 414
Score = 30.8 bits (68), Expect = 0.75
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 26 PKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPT 58
P P L+PK+ PPP + +PQ + L T
Sbjct: 97 PPSATPFLIPKNNPPPKPQSSPQPQNLTLIQTT 195
>TC13367 similar to UP|Q84W12 (Q84W12) At4g16450, partial (91%)
Length = 491
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 20 KSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHEPNAS 67
++S P + PSL+ + P P +SA + P I ++P+P P+A+
Sbjct: 52 QTSLHPPSQSTPSLIA-TLPSPTSSATSTPSTISASSPSPAFPSPSAT 192
>TC7830 UP|Q8H946 (Q8H946) Phosphoenolpyruvate carboxylase , complete
Length = 3376
Score = 30.0 bits (66), Expect = 1.3
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 262 QKSDSNQCWVPLEYHGCKSDISS---RYFQQMVTHESSPINFEMSTYDYIA 309
+KSD N CWV +G SD++S R + TH S NF +T + I+
Sbjct: 1533 KKSDRNGCWVS*AANGHCSDLTSPKLRKSEMFWTHFMSLPNFHRTTLEPIS 1685
>TC11138 homologue to UP|PURA_ARATH (Q96529) Adenylosuccinate synthetase,
chloroplast precursor (IMP--aspartate ligase) (AdSS)
(AMPSase) , partial (17%)
Length = 429
Score = 30.0 bits (66), Expect = 1.3
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Frame = +2
Query: 5 DLDAPVKPRVSRFAPKSSKFKPKKEEPSLVPKSEPP---PLASAKT 47
+L+AP P P +S F P+ L P S PP PLAS ++
Sbjct: 77 NLNAPSPPSTITAPPGTSSFAPRSPSLLLPPSSPPPTPPPLASGRS 214
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 29.6 bits (65), Expect = 1.7
Identities = 15/52 (28%), Positives = 24/52 (45%)
Frame = -1
Query: 21 SSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHEPNASVKTDA 72
S++ +P E P+ S PPP + + P I P P + P A+ + A
Sbjct: 181 STRPRPASESPTSSSPSSPPPSSGSSVSPPRIS-PPPPPPSNSPTATPPSSA 29
>TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO1)-like
protein {Arabidopsis thaliana;} , partial (32%)
Length = 1142
Score = 29.6 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = +3
Query: 33 LVPKSEPPPLASAKTEPQEIDL--TAPTPVK 61
L+P PPP+ A EP ++DL P PVK
Sbjct: 108 LMPPPPPPPIVPADVEPVKVDLLDLPPEPVK 200
>AV407983
Length = 417
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/54 (31%), Positives = 24/54 (43%)
Frame = +1
Query: 6 LDAPVKPRVSRFAPKSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTP 59
L AP +S AP S+ PSL + P P + T P +T+P+P
Sbjct: 253 LSAPTSSSLSSSAPSSTSSSSASSNPSLADLALPTP-PTTTTTPSFPSITSPSP 411
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 4/63 (6%)
Frame = +3
Query: 9 PVKPRVSRFAPK--SSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAP--TPVKHEP 64
P P + +P S+ P PS P+S+P PL+++ T P T P T K P
Sbjct: 138 PHAPAAASSSPPTPSATLPPTPSPPS--PRSDPSPLSTSTTNPTTSSSTTPKTTTNKSNP 311
Query: 65 NAS 67
N +
Sbjct: 312 NTA 320
>TC15656 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (23%)
Length = 846
Score = 29.3 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 8 APVKPRVSRFAPKSSKFKPKKEEPSLVPKS-EPPPLASAKTEPQEIDLTAPTPVKHEP 64
APV + P + F ++P P +PPPLA+A P + P P H+P
Sbjct: 525 APVSDQPDPVKPNNVDFLFGLDKPVAAPPPLQPPPLAAANPVPPPV--AVPPPEYHQP 692
>BP046732
Length = 495
Score = 29.3 bits (64), Expect = 2.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 168 SYNVEKATADKLKYTKQT-LSTTWKPPPANGCAVGLLMGDKLHL 210
S N++ K+ +TK+T L TTW P + C ++ KLHL
Sbjct: 433 STNLQDMDCWKVDHTKRTKLGTTWNPFSSICCPTNFII*KKLHL 302
>TC14327 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2G14_40
{Arabidopsis thaliana;}, partial (22%)
Length = 1038
Score = 28.9 bits (63), Expect = 2.8
Identities = 24/94 (25%), Positives = 44/94 (46%)
Frame = +3
Query: 443 CNLLWKSLI*NPKKIIGSSKSFLTSPS*KNFQLLLKNKKKFLRSWKMR*IVLSVLLEEKE 502
C LLW I + K+I+GS T S*K F ++ + ++ +R VLS+ L + +
Sbjct: 489 CKLLWC*SITSTKQIVGSMGYIYTMWS*KEFSSCSYDQYMEIFAFVIRFKVLSIYLLQSD 668
Query: 503 NLKVL*QTVVSTMLFLHQQILIHGQQVWVKILLG 536
++ T+V ++G ++ +L G
Sbjct: 669 QH*IMQVTMVLINY*YQADCRVYGIHIYNVVLEG 770
>TC10353 weakly similar to UP|Q9FKY7 (Q9FKY7) Genomic DNA, chromosome 5, TAC
clone:K2A18, partial (7%)
Length = 534
Score = 28.5 bits (62), Expect = 3.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 300 FEMSTYDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLLIE 344
F M++ Y A P +SSN++ PSK + + R++++ IE
Sbjct: 185 FSMTSVRYSAAYQPSISSNSVFVFPSKPHFKTAAFMNRVESVAIE 319
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 28.1 bits (61), Expect = 4.8
Identities = 19/60 (31%), Positives = 26/60 (42%), Gaps = 4/60 (6%)
Frame = +3
Query: 19 PKSSKFKPKKEEPSLVPKSEPPPLA----SAKTEPQEIDLTAPTPVKHEPNASVKTDAES 74
P + + P PS++P P+ SA T P +P+PV P AS AES
Sbjct: 600 PTAGEPSPAGTPPSVLPSPAGAPVPAGGPSAGTPPSASTSPSPSPVSAPPAASPAPGAES 779
>CB829188
Length = 236
Score = 28.1 bits (61), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Frame = +2
Query: 39 PPPLASAKTEPQEIDLTAPTPVKH-EPNASVK 69
PPPL S+ + P + P+P H PN S K
Sbjct: 50 PPPLHSSSSHPPSLSTLNPSPPSHSHPNPSPK 145
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
(12%)
Length = 431
Score = 28.1 bits (61), Expect = 4.8
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +3
Query: 9 PVKPRVSRFAPKSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHEPN 65
P++P S SS P P P P+ + P I + P P+ H PN
Sbjct: 78 PLQPPSSLPQTSSSTTPPISAPPHPPQNPNPTPIPAPNPNPNPIQIQNPNPI-HNPN 245
>AV428671
Length = 236
Score = 27.7 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 16 RFAPKSSKFKPKKEEPSLVPKSEPPPLASAKTEPQEIDLTAPTPVKHEP 64
R + S+ F+ P VP S PPP S LT+P+ + P
Sbjct: 235 RMSDSSTAFQTPPPPPXTVP-SSPPPTTSLTPSQTRTALTSPSSSRRSP 92
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.327 0.140 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,723,705
Number of Sequences: 28460
Number of extensions: 166003
Number of successful extensions: 1401
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of query: 676
length of database: 4,897,600
effective HSP length: 96
effective length of query: 580
effective length of database: 2,165,440
effective search space: 1255955200
effective search space used: 1255955200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147178.5