TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147178.4 - phase: 0 
         (248 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7972 similar to GB|AAO63356.1|28950865|BT005292 At4g16580 {Ara...   161  9e-41
TC17373 similar to GB|AAO63356.1|28950865|BT005292 At4g16580 {Ar...    75  2e-25
TC17449                                                                85  8e-25
AV768463                                                               40  5e-04
AV778667                                                               27  4.3

>TC7972 similar to GB|AAO63356.1|28950865|BT005292 At4g16580 {Arabidopsis
           thaliana;}, partial (35%)
          Length = 510

 Score =  161 bits (408), Expect = 9e-41
 Identities = 84/123 (68%), Positives = 97/123 (78%)
 Frame = +1

Query: 126 QQRGFNFPYQLARSGTEGDLPSSGEVFTVPVAPGDIIVAGTDGLFDNMYNNDIVGVVVGA 185
           QQ  FN PYQL R G EGDLPSSGEVFT+PVAPGD+IVAGTDGLFDN++N++I  VV  A
Sbjct: 7   QQHDFNCPYQLER-GNEGDLPSSGEVFTLPVAPGDVIVAGTDGLFDNLHNDEITAVVEHA 183

Query: 186 TRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEYGYRFDGGKLDDLTVVVSYISNS 245
            +  L P  TAQKIAALAR+RALD   Q+PFS AA + G+ + GGKLDDLTVVVSYI NS
Sbjct: 184 AKMGLEPHMTAQKIAALARERALDKFGQTPFSTAAQKVGFPYYGGKLDDLTVVVSYIPNS 363

Query: 246 VNE 248
            +E
Sbjct: 364 TSE 372


>TC17373 similar to GB|AAO63356.1|28950865|BT005292 At4g16580 {Arabidopsis
           thaliana;}, partial (15%)
          Length = 857

 Score = 75.5 bits (184), Expect(2) = 2e-25
 Identities = 36/54 (66%), Positives = 43/54 (78%)
 Frame = +1

Query: 18  GEDAHFICEDEQAIGVADGVGGWADVGVNAGLYAQELVANSARAIREEPKGSFN 71
           GE    +   EQ IGVADGVGGWA+VGVNA LYAQEL++NS RA++EEP GSF+
Sbjct: 694 GERMLILFAHEQVIGVADGVGGWANVGVNAVLYAQELMSNSVRAVKEEPDGSFD 855



 Score = 55.8 bits (133), Expect(2) = 2e-25
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +3

Query: 1   MLSGSCYLPHPDKVATGGEDAHFIC 25
           M++GSCYLPHPDKV TGGEDAHFIC
Sbjct: 645 MIAGSCYLPHPDKVETGGEDAHFIC 719


>TC17449 
          Length = 741

 Score = 84.7 bits (208), Expect(2) = 8e-25
 Identities = 46/123 (37%), Positives = 74/123 (59%), Gaps = 1/123 (0%)
 Frame = +2

Query: 69  SFNPVRVLEKAHSKTKAMGSSTVCIIALIDEALNAINLGDSGFIVIRDGSVIFKSPVQQR 128
           +  P  VL ++ ++T+  GSS+V +     EAL+A N+G++GFI+IRDG +  KS  +  
Sbjct: 5   TIKPSEVLTRSAAETQTPGSSSVLVAYFDGEALHAANVGNTGFIIIRDGFIFKKSTAKFH 184

Query: 129 GFNFPYQLARSGTEGDLPSS-GEVFTVPVAPGDIIVAGTDGLFDNMYNNDIVGVVVGATR 187
            FNFP  + +    GD PS   E + V +  GD+I+  T+GLFDN+Y+ +I   +  + +
Sbjct: 185 EFNFPLHIVK----GDDPSEIIEGYKVDLCDGDVIIFATNGLFDNLYDQEIASTISKSLQ 352

Query: 188 ARL 190
           A L
Sbjct: 353 ASL 361



 Score = 44.7 bits (104), Expect(2) = 8e-25
 Identities = 25/58 (43%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
 Frame = +1

Query: 186 TRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEYGY-RFDGGKLDDLTVVVSYI 242
           T + L PQ  A+ +A  A++    T  +SPF+ AA   GY  + GGKLDD+TV+VS +
Sbjct: 346 TTS*LVPQEIAEVLAKRAQEVGKSTSTRSPFADAAQAIGYVGYSGGKLDDVTVIVSVV 519


>AV768463 
          Length = 536

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -3

Query: 224 GYRFDGGKLDDLTVVVSYISNSVNE 248
           G+ + GGKLDDLTVVVSYI NS +E
Sbjct: 531 GFPYYGGKLDDLTVVVSYIPNSTSE 457


>AV778667 
          Length = 541

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (52%)
 Frame = +3

Query: 207 ALDTKRQSPFSAAALEYGYRFDGGKLDDLTVVVSYISNS 245
           AL +  +   S   L++GYR    K DDL  ++SY + S
Sbjct: 126 ALCSGERKKASDLLLDFGYRSRSLKADDLVGILSYCARS 242


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,014
Number of Sequences: 28460
Number of extensions: 34577
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of query: 248
length of database: 4,897,600
effective HSP length: 88
effective length of query: 160
effective length of database: 2,393,120
effective search space: 382899200
effective search space used: 382899200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)