TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147178.14 + phase: 0 
         (465 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV410269                                                              112  1e-25
AV421223                                                               52  3e-07
TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), par...    31  0.50
TC12847 similar to GB|AAM66074.1|21595125|AY088542 endosperm-spe...    27  5.5
BP080087                                                               27  7.2
TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%)            27  9.4
TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta...    27  9.4

>AV410269 
          Length = 430

 Score =  112 bits (281), Expect = 1e-25
 Identities = 47/75 (62%), Positives = 65/75 (86%)
 Frame = +1

Query: 67  SSYEPVWPEMKFDWKIIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAIS 126
           S  + +WPE++F W++++ ++IGFLG+A G+VGGVGGGGIFVPML LI+GFD KS+ A+S
Sbjct: 205 SGTKKIWPELEFSWRLVLATLIGFLGSAFGTVGGVGGGGIFVPMLTLIVGFDTKSAAALS 384

Query: 127 KCMIMGAALSTVYYN 141
           KCMIMGA+ S+V+YN
Sbjct: 385 KCMIMGASTSSVWYN 429


>AV421223 
          Length = 414

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +2

Query: 193 FIGTSTKALIKGINTWKKETMLKKETAKQLEEEPKTGAYQRVQVKYK 239
           FIGTSTKA +KG+ TWKKET++KKE A++     K  A    +V+YK
Sbjct: 5   FIGTSTKAFLKGVETWKKETIMKKEAARR-----KESAGSGAEVEYK 130


>TC14264 similar to UP|Q84NF9 (Q84NF9) Histone H1 (Fragment), partial (76%)
          Length = 1277

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = -3

Query: 71   PVWPEMKF--DWKIIVGSIIG---FLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAI 125
            P+W  + F  D+ ++   +     F G A     G+GGGG F P + L+   D  +  A 
Sbjct: 1011 PLWGAVLFAGDFTVLAFPLFAGAFFTGVAAFFGAGLGGGGTFFPGVVLVEVLDALAGLAA 832

Query: 126  SKCMIMGAALSTVYYNMRLRNPTLD 150
               +  G A  T  +   +R   LD
Sbjct: 831  GFALAAGLAFGTGGFTF-IRGAVLD 760


>TC12847 similar to GB|AAM66074.1|21595125|AY088542 endosperm-specific
           protein-like protein {Arabidopsis thaliana;} , partial
           (11%)
          Length = 245

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 83  IVGSIIGFLGAALGS-VGGVGGGG 105
           +VG+++G  G  LG  VGG GGGG
Sbjct: 170 VVGAVVGVGGENLGDVVGGDGGGG 99


>BP080087 
          Length = 382

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = +2

Query: 364 QVLHQHFPCFFHPPC 378
           Q+LH HF  F HPPC
Sbjct: 254 QILHNHF--FIHPPC 292


>TC13235 similar to UP|Q9LQB6 (Q9LQB6) F4N2.1, partial (38%)
          Length = 467

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 85  GSIIGFLGAALGSVGGVGGGG 105
           G I+GFLG     +G  GGGG
Sbjct: 208 GEILGFLGGFGDEIGDPGGGG 146


>TC9577 weakly similar to UP|ATPD_PEA (Q02758) ATP synthase delta chain,
           chloroplast precursor  , partial (54%)
          Length = 627

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 15/22 (67%), Gaps = 1/22 (4%)
 Frame = -3

Query: 85  GSIIGFLGAA-LGSVGGVGGGG 105
           G + GF+GA  +G  GGV GGG
Sbjct: 331 GGVEGFVGAGDVGECGGVAGGG 266


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.351    0.156    0.553 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,631,026
Number of Sequences: 28460
Number of extensions: 155082
Number of successful extensions: 1500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of query: 465
length of database: 4,897,600
effective HSP length: 93
effective length of query: 372
effective length of database: 2,250,820
effective search space: 837305040
effective search space used: 837305040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 57 (26.6 bits)