TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147178.12 + phase: 0 
         (163 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15091 similar to UP|Q897L9 (Q897L9) Sensor histidine kinase, p...    30  0.16
TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, pa...    28  0.60
TC8538 similar to UP|AAQ65130 (AAQ65130) At3g47300, partial (73%)      28  0.78
TC12886                                                                27  1.7
TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%)     26  3.0
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti...    26  3.0
TC17030 similar to UP|Q8S995 (Q8S995) Glucosyltransferase-14, pa...    26  3.0
AV420160                                                               26  3.9
TC13658 similar to UP|Q8HH36 (Q8HH36) Cytochrome oxidase subunit...    26  3.9
CB829602                                                               25  5.1
AV412587                                                               25  5.1
TC9958 similar to GB|AAP37806.1|30725568|BT008447 At5g25265 {Ara...    25  5.1
AV421966                                                               25  5.1
AV779303                                                               25  5.1
TC10028 weakly similar to UP|Q9LXX7 (Q9LXX7) Cytochrome P450-lik...    25  6.6
TC18372                                                                25  6.6
TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DN...    25  6.6
AV410198                                                               25  8.6
TC17230 homologue to UP|O23635 (O23635) Transcription factor (Fr...    25  8.6
TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete              25  8.6

>TC15091 similar to UP|Q897L9 (Q897L9) Sensor histidine kinase, partial (6%)
          Length = 637

 Score = 30.4 bits (67), Expect = 0.16
 Identities = 14/46 (30%), Positives = 24/46 (51%)
 Frame = -1

Query: 14  TNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGL 59
           T+H N  L KP++ +  L + +T    +  +T S    I+ IA G+
Sbjct: 256 THHKNQHLHKPRTRNKELSVSVTTQPNQKFNTQSKHP*ISGIAAGV 119


>TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, partial (12%)
          Length = 487

 Score = 28.5 bits (62), Expect = 0.60
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 12  TFTNHLNHPLRKPKSHHVRLKLKITN 37
           TFT H +HP RK K  H+ + L++ N
Sbjct: 129 TFTLHFHHPFRKLKVTHL*IFLQVQN 206


>TC8538 similar to UP|AAQ65130 (AAQ65130) At3g47300, partial (73%)
          Length = 1135

 Score = 28.1 bits (61), Expect = 0.78
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 3   LFSPISTPKTFTNHLNHPLRKPKSH 27
           LF+P   PK   +H +HP+ +P+ H
Sbjct: 149 LFAPAPPPKPTHHHRHHPIPQPQPH 223


>TC12886 
          Length = 613

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 3   LFSPISTPKTFTNHLNHPLRKPKSH 27
           L + ISTPK   N L+H +   K+H
Sbjct: 498 LLTTISTPKNINNRLDHSISGGKNH 424


>TC14113 similar to UP|O82161 (O82161) Phi-1 protein, partial (87%)
          Length = 1315

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
 Frame = +2

Query: 77  CGLPPGPGGSIGALEGVSYLVVV-----------GIVAWSIYT-----KTKTGSGLPNGP 120
           CG       S+G  +G SY               G  AW  +      ++    G PN  
Sbjct: 551 CGTHGSSASSVGPTKGKSYKFAYIWVGNSEAQCPGQCAWPFHQPMYGPQSPPPLGAPNND 730

Query: 121 FGLLGAVEGLSYLALVAIVVVFGLQYFQQGYIPGPLPA 158
            GL G V  L+ L        FG  +F QG    PL A
Sbjct: 731 VGLDGMVINLASLLAGTATNPFGNGFF-QGAAEAPLEA 841


>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
          Length = 1294

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -2

Query: 16  HLNHPLRKPKSH 27
           HLNHPL KP SH
Sbjct: 573 HLNHPLLKPISH 538


>TC17030 similar to UP|Q8S995 (Q8S995) Glucosyltransferase-14, partial (51%)
          Length = 1098

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 24  PKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLISTPVIGWS 68
           P +HH  L     +   E S++NS  T++    G  IST  + W+
Sbjct: 320 PTTHHASLTQPNPDPKSESSNSNSHTTKLDYQKGVRISTCSLHWA 454


>AV420160 
          Length = 417

 Score = 25.8 bits (55), Expect = 3.9
 Identities = 13/44 (29%), Positives = 19/44 (42%)
 Frame = +1

Query: 6   PISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSP 49
           P     T++   NH L  PKSH        T  +   +DT ++P
Sbjct: 286 PTKLMVTYSYEHNHSLPVPKSHSSAASATATTSSDGAADTPATP 417


>TC13658 similar to UP|Q8HH36 (Q8HH36) Cytochrome oxidase subunit I
          (Fragment), partial (11%)
          Length = 495

 Score = 25.8 bits (55), Expect = 3.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 20 PLRKPKSHHVRLK 32
          P R+P+SHHV+LK
Sbjct: 56 PPRRPRSHHVKLK 18


>CB829602 
          Length = 542

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 16/49 (32%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
 Frame = -1

Query: 8   STPKTFTNHLNHPLRKPKSHHVRLKLKITNMA-KEGSDTNSSPTEIAAI 55
           ST   FT+ L   +  PKSH +++ L++TN + K G     +P  + +I
Sbjct: 533 STSSLFTSSLF--ISMPKSHSLQIYLELTNWSLKNGLQIRGTPLLMLSI 393


>AV412587 
          Length = 311

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
 Frame = +2

Query: 36  TNMAKEGSDTNS----SPTEIAAIA-----GGLISTPVIGWSLYTLKTTGCGLPPGPGGS 86
           T   ++GSD       +P E+   +     G    +  +G  L      GCG PP P   
Sbjct: 80  TQAGRKGSDVGCCRSLAPAEVGGTS*NIRRGDKPQSQALGHVLVMSLCIGCGAPPPPFVR 259

Query: 87  IGALEGVSYL 96
            G L  V +L
Sbjct: 260 SGTLPRVCFL 289


>TC9958 similar to GB|AAP37806.1|30725568|BT008447 At5g25265 {Arabidopsis
           thaliana;}, partial (36%)
          Length = 632

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 89  ALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGPFG 122
           ++ GVS   ++ + +++I+T+  T SG P G  G
Sbjct: 408 SIYGVSQWGMLAVASFTIFTRVTTLSGTPGGGKG 307


>AV421966 
          Length = 469

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 10  PKTFTNHLNHPLRKPKSHHVR 30
           P +  +H  HPL +P  HH+R
Sbjct: 347 PTSRQSHRQHPLMQPGVHHLR 285


>AV779303 
          Length = 496

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (49%)
 Frame = +3

Query: 8  STPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKE 41
          ST K  +  +N+P +  K H   L  KI   AKE
Sbjct: 39 STSKNLS*KVNYPSKLRKQHDAPLTTKIQEAAKE 140


>TC10028 weakly similar to UP|Q9LXX7 (Q9LXX7) Cytochrome P450-like protein,
           partial (16%)
          Length = 874

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (49%)
 Frame = +3

Query: 7   ISTPKTFTNHLNHPLRKPKSHH 28
           +  P     H NHP  +P+ HH
Sbjct: 258 VHPPPPHLTHRNHPRPRPEKHH 323


>TC18372 
          Length = 452

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +3

Query: 4   FSPISTPKTFTNHLNHPLR 22
           +S  ST K F +HL HPL+
Sbjct: 354 YSSTST*KVFHSHLEHPLK 410


>TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
          protein, partial (7%)
          Length = 488

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (53%)
 Frame = +3

Query: 1  MLLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITN 37
          +LLF+   T     N+  HP  KP S+H+ L +  +N
Sbjct: 39 LLLFT---TTSNNCNNYTHPKSKPCSNHLLLLISFSN 140


>AV410198 
          Length = 337

 Score = 24.6 bits (52), Expect = 8.6
 Identities = 10/31 (32%), Positives = 18/31 (57%)
 Frame = -3

Query: 86  SIGALEGVSYLVVVGIVAWSIYTKTKTGSGL 116
           S  A EG+  +V VG+  WS+  + ++ S +
Sbjct: 287 SPAAAEGLEVVVEVGVAGWSVKPRERSLSAI 195


>TC17230 homologue to UP|O23635 (O23635) Transcription factor (Fragment),
           partial (37%)
          Length = 554

 Score = 24.6 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -1

Query: 72  LKTTGCGLPPGPGGSIGALEGVS 94
           L+T   GLP G GG++ A+ G S
Sbjct: 254 LRTVEIGLPTGAGGAVRAVIGGS 186


>TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete
          Length = 1950

 Score = 24.6 bits (52), Expect = 8.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
 Frame = -1

Query: 13   FTNHLNHPLRK----------PKSHHVRLKLKITNMAKEGSDTNSSP 49
            +T+HL+H   K          P+SHH++   K+++     +   SSP
Sbjct: 1515 WTHHLHHGKHKQTHHASSNPSPQSHHLQKSSKVSSYEAHRTTAPSSP 1375


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,116,189
Number of Sequences: 28460
Number of extensions: 41270
Number of successful extensions: 255
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of query: 163
length of database: 4,897,600
effective HSP length: 83
effective length of query: 80
effective length of database: 2,535,420
effective search space: 202833600
effective search space used: 202833600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)