BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.1 - phase: 0
(79 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV423335 113 6e-27
TC8949 similar to GB|AAM62553.1|21553460|AY085322 snap25a {Arabi... 26 1.5
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 25 2.0
TC9090 25 2.0
AI967496 25 2.6
TC9844 25 2.6
TC17437 24 5.8
BP042135 24 5.8
TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soyb... 23 7.6
TC11812 similar to UP|Q93W01 (Q93W01) At2g01080/F23H14.5, partia... 23 7.6
TC18474 similar to UP|P93041 (P93041) Homeodomain protein AHDP, ... 23 9.9
TC15003 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-meth... 23 9.9
TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription facto... 23 9.9
TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, p... 23 9.9
BP031309 23 9.9
>AV423335
Length = 466
Score = 113 bits (283), Expect = 6e-27
Identities = 53/61 (86%), Positives = 58/61 (94%)
Frame = +1
Query: 5 LIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
L+GSN+ SEVGLRLLLCPLGS+VVIRTACCSVGI LPVYSTFKAIESK+QDAQ RCL+YW
Sbjct: 22 LLGSNLTSEVGLRLLLCPLGSNVVIRTACCSVGIALPVYSTFKAIESKDQDAQNRCLLYW 201
Query: 65 A 65
A
Sbjct: 202A 204
>TC8949 similar to GB|AAM62553.1|21553460|AY085322 snap25a {Arabidopsis
thaliana;} , partial (39%)
Length = 601
Score = 25.8 bits (55), Expect = 1.5
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -1
Query: 15 GLRLLLCPLGSHVVIRTACCS 35
G+R+L+CPLG+ V + CS
Sbjct: 151 GVRILVCPLGAEVNPNFSLCS 89
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 25.4 bits (54), Expect = 2.0
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 8 SNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESK-NQDAQ 57
S++ S V + +LL L S V G+PVYS FK +SK N+D +
Sbjct: 820 SSLVSRVFVAVLLVLLASPV-----------GIPVYSYFKGRKSKSNRDVE 939
>TC9090
Length = 562
Score = 25.4 bits (54), Expect = 2.0
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 VGLRLLLCPLGSHVVIRTACC-SVGIGLPVYS 44
+GL ++ P+GS ++ CC S G+ +P+Y+
Sbjct: 419 MGLWGVIVPIGSKSSLQVKCCQSSGLPIPLYN 514
>AI967496
Length = 196
Score = 25.0 bits (53), Expect = 2.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 21 CPLGSHVVIRTACCS 35
CPLG HV RT C S
Sbjct: 123 CPLGHHVQGRTTCTS 167
>TC9844
Length = 557
Score = 25.0 bits (53), Expect = 2.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 60 CLVYWAGLNFINP 72
C+V+W +NF NP
Sbjct: 162 CIVFWVNVNFSNP 200
>TC17437
Length = 455
Score = 23.9 bits (50), Expect = 5.8
Identities = 12/44 (27%), Positives = 22/44 (49%)
Frame = +1
Query: 9 NIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESK 52
N+ + + ++ C + +HV C S L +YS+ K+ E K
Sbjct: 298 NVVRK*VINVISCTM*THVYTLKCCASTLSPLDMYSSDKSHEKK 429
>BP042135
Length = 357
Score = 23.9 bits (50), Expect = 5.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 27 VVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRC 60
+ + A ++GIG+PV+ + + +D Q C
Sbjct: 170 ITVGVASVAIGIGIPVFYESQIDNAAKRDNTQPC 271
>TC8736 similar to PIR|T06396|T06396 isoprenylated protein - soybean
(fragment) {Glycine max;}, partial (84%)
Length = 1268
Score = 23.5 bits (49), Expect = 7.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 1 MALPLIGSNIASEVGLRLLLCPLGSHV 27
+ALPL + + V R+ +CP SH+
Sbjct: 749 LALPLAVAPLGGPVSDRVRVCPWASHL 669
>TC11812 similar to UP|Q93W01 (Q93W01) At2g01080/F23H14.5, partial (52%)
Length = 592
Score = 23.5 bits (49), Expect = 7.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +3
Query: 4 PLIGSNIASEVGL----RLLLCPLGSHVVIRTACCSVG 37
PL+ N S + + RLLL PL S V+ T+C G
Sbjct: 177 PLLPENTFSPIIIGVIERLLLLPLPSTVIPGTSCSGGG 290
>TC18474 similar to UP|P93041 (P93041) Homeodomain protein AHDP, partial
(3%)
Length = 805
Score = 23.1 bits (48), Expect = 9.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 18 LLLCPLGSHVVIRTACCSV 36
LL P GSH++ ++C S+
Sbjct: 63 LLFKPFGSHILFTSSCPSI 119
>TC15003 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
O-methyltransferase, partial (26%)
Length = 797
Score = 23.1 bits (48), Expect = 9.9
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2
Query: 7 GSNIASEVGLRLLLCPLGS 25
G ++A+ LR LCPLGS
Sbjct: 490 GGSLAATWVLRSFLCPLGS 434
>TC9975 similar to UP|AAR15448 (AAR15448) AP2 transcription factor, partial
(41%)
Length = 865
Score = 23.1 bits (48), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 51 SKNQDAQQRCLVYWAGLNFINP 72
SKN + + L YW G NF P
Sbjct: 857 SKNSSSP*KKLSYWHGFNFSVP 792
>TC15083 similar to UP|GAR1_YEAST (P28007) snoRNP protein GAR1, partial (7%)
Length = 1367
Score = 23.1 bits (48), Expect = 9.9
Identities = 11/43 (25%), Positives = 15/43 (34%)
Frame = -2
Query: 21 CPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVY 63
CP H + A + LPV S N CL++
Sbjct: 1180 CPPSRHAAAQNAPADAAVNLPVSPPSNKAVSPNLPPSPPCLLF 1052
>BP031309
Length = 422
Score = 23.1 bits (48), Expect = 9.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 60 CLVYWAGLNFI 70
CL+YW+ L+FI
Sbjct: 49 CLIYWSKLSFI 17
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,507,966
Number of Sequences: 28460
Number of extensions: 16922
Number of successful extensions: 115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of query: 79
length of database: 4,897,600
effective HSP length: 55
effective length of query: 24
effective length of database: 3,332,300
effective search space: 79975200
effective search space used: 79975200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)
Medicago: description of AC147178.1