TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147014.6 + phase: 0 
         (211 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV416075                                                               87  3e-18
TC19900 similar to UP|HL3A_ARATH (Q9SWE5) Halotolerance protein ...    68  1e-12
AV418330                                                               30  0.31
BP063215                                                               30  0.40
BI420445                                                               27  2.6
BP074727                                                               26  4.5
TC15911                                                                26  5.8
TC20187 similar to UP|Q9FI59 (Q9FI59) Gb|AAD29063.1, partial (44%)     26  5.8
AV415290                                                               25  10.0

>AV416075 
          Length = 381

 Score = 86.7 bits (213), Expect = 3e-18
 Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
 Frame = -3

Query: 130 WNYKKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPP--HESSDGEYTNTGSMADPS 187
           W+Y KP FVAP+MN  MW NP TE+HL   +ELGI LIPP     + G+Y N G+MA+PS
Sbjct: 379 WDYSKPFFVAPAMNTLMWNNPFTERHLISTDELGICLIPPVAKRLACGDYGN-GAMAEPS 203

Query: 188 KIYSTVRVFYD 198
            IYSTVR+FY+
Sbjct: 202 TIYSTVRLFYE 170


>TC19900 similar to UP|HL3A_ARATH (Q9SWE5) Halotolerance protein Hal3a
           (AtHal3a), partial (22%)
          Length = 372

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 32/69 (46%), Positives = 48/69 (69%)
 Frame = +2

Query: 6   AIGKSVTHEFDAKRKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFISEAS 65
           A G++++ +  A RKPRI++ A GSVAA+KF  +   F EWAEV A+ TK S HFI   +
Sbjct: 164 AEGEAMSVDAAAPRKPRILLAASGSVAALKFANLCHCFSEWAEVRAVATKSSLHFIDRTA 343

Query: 66  IPKGVIVFS 74
           IP+ +I+++
Sbjct: 344 IPRMLILYT 370


>AV418330 
          Length = 294

 Score = 30.0 bits (66), Expect = 0.31
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 20  KPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFISEASIPKG-VIVFSDEHE 78
           +P I  G  G +    +G +   F  WA VHA+ T  + +F+  A +    ++  S  + 
Sbjct: 26  EPAITYGNLG-LPPEWYGALEWVFPNWARVHALDTGEAVNFLKGAVVTADRIVTVSKGYS 202

Query: 79  WQAWKQLGDTAAHIKLANWADIL 101
           W+     G    H  L++   IL
Sbjct: 203 WEITTSEGGYGLHELLSSRKSIL 271


>BP063215 
          Length = 547

 Score = 29.6 bits (65), Expect = 0.40
 Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
 Frame = +3

Query: 121 NLLTSIVRSWNYKKPMFVAPSMNDAMWRNPL-TEKHLKRINELGITLIPPHESSDGEYTN 179
           ++L SI+  W      F   S   + W  P+  ++ L  ++EL +   P  E SD E   
Sbjct: 126 SVLCSILEIW------FPGASEESSYWNEPVGVKRFLMALDELEL---PGFELSDLEQ-- 272

Query: 180 TGSMADPSKIYSTVRVFYDYNILKK 204
            GSM    +   T+R  +DYN +++
Sbjct: 273 -GSMVPVLQCLETLRTHFDYNDVRE 344


>BI420445 
          Length = 422

 Score = 26.9 bits (58), Expect = 2.6
 Identities = 18/71 (25%), Positives = 32/71 (44%), Gaps = 6/71 (8%)
 Frame = -1

Query: 10  SVTHEFDAKRKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHF------ISE 63
           + T  ++A   PR+  G    + +M F   LR + ++A + ++  +  C F      I+ 
Sbjct: 230 AATERWEAMP*PRLEEGTKVWIKSMTFPFSLRTYSKYASLSSVSKRFCCSFHTIFGTITS 51

Query: 64  ASIPKGVIVFS 74
           AS P  V   S
Sbjct: 50  ASFPSLVFAIS 18


>BP074727 
          Length = 419

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +2

Query: 130 WNYKKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPPHESSDGEYTNTGSMADPSKI 189
           W  +KP    PSM +    +P T       N L  T  P +  ++           PS  
Sbjct: 209 WKLQKPETAEPSMQEPSHHHPKTHDPQDEHNNLETTFPPLNPGTEPPPPKPSLRRSPS-- 382

Query: 190 YSTVRV 195
           +ST R+
Sbjct: 383 FSTARI 400


>TC15911 
          Length = 774

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 55  KPSCHFISEASIPKG 69
           KPS HF S AS PKG
Sbjct: 402 KPSHHFCSSASAPKG 446


>TC20187 similar to UP|Q9FI59 (Q9FI59) Gb|AAD29063.1, partial (44%)
          Length = 657

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 162 LGITLIPPHESSDGEYTNTGSMADPSKIYSTVRVFYDYNI 201
           LG+T I    ++D  ++NT    DPS   S++RV    N+
Sbjct: 214 LGLTSIMSASAADQSHSNTAPKMDPS--LSSIRVSLSLNL 101


>AV415290 
          Length = 417

 Score = 25.0 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 49  VHAIVTKPSCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKLAN 96
           V  + ++P C F+S + +   VI   D H  +A     DT  HI  A+
Sbjct: 98  VQPLESRPGCRFMSPSCMSIPVIDLGDRHNDRA-----DTIKHILKAS 226


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,891,337
Number of Sequences: 28460
Number of extensions: 53644
Number of successful extensions: 214
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of query: 211
length of database: 4,897,600
effective HSP length: 86
effective length of query: 125
effective length of database: 2,450,040
effective search space: 306255000
effective search space used: 306255000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)