TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147014.3 + phase: 0 
         (205 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV416075                                                               80  2e-16
TC19900 similar to UP|HL3A_ARATH (Q9SWE5) Halotolerance protein ...    63  4e-11
AV780095                                                               26  5.6
TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribos...    26  5.6
AI967809                                                               25  7.3
TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Ar...    25  9.5
TC11194 similar to UP|Q9M548 (Q9M548) Cytosine methyltransferase...    25  9.5

>AV416075 
          Length = 381

 Score = 80.5 bits (197), Expect = 2e-16
 Identities = 38/71 (53%), Positives = 49/71 (68%), Gaps = 4/71 (5%)
 Frame = -3

Query: 133 WDYEKPMFVAPSMDGCMWRNPFTEQNFMSIEELGVTLIPPVQHM----PTNMREMADPST 188
           WDY KP FVAP+M+  MW NPFTE++ +S +ELG+ LIPPV             MA+PST
Sbjct: 379 WDYSKPFFVAPAMNTLMWNNPFTERHLISTDELGICLIPPVAKRLACGDYGNGAMAEPST 200

Query: 189 IFSTVKSFYDS 199
           I+STV+ FY+S
Sbjct: 199 IYSTVRLFYES 167


>TC19900 similar to UP|HL3A_ARATH (Q9SWE5) Halotolerance protein Hal3a
           (AtHal3a), partial (22%)
          Length = 372

 Score = 62.8 bits (151), Expect = 4e-11
 Identities = 30/45 (66%), Positives = 36/45 (79%)
 Frame = +2

Query: 16  APRKPRILLGCCGSVAAMKFGLVFNAFSEWAEVRAVVTETSLQFL 60
           APRKPRILL   GSVAA+KF  + + FSEWAEVRAV T++SL F+
Sbjct: 197 APRKPRILLAASGSVAALKFANLCHCFSEWAEVRAVATKSSLHFI 331


>AV780095 
          Length = 511

 Score = 25.8 bits (55), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (54%)
 Frame = +2

Query: 60  LVHEKAESLFTHRHDIYKDDSEWKNWK 86
           ++H K E L  HR  I+  DS +  WK
Sbjct: 254 VLHNKLELLIPHRIQIFPLDSGFLGWK 334


>TC14530 similar to UP|P82277 (P82277) Plastid-specific 30S ribosomal
           protein 2, chloroplast precursor (PSRP-2), partial (68%)
          Length = 1104

 Score = 25.8 bits (55), Expect = 5.6
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
 Frame = +3

Query: 68  LFTHRHDIYKDDSEWK------NWKKIGDSVLHIELA 98
           L +H H +Y+D   W+      N +  GDS L   LA
Sbjct: 150 LLSHAHSVYEDPLRWRSKLRPPNLRLTGDSTLATFLA 260


>AI967809 
          Length = 482

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
 Frame = +2

Query: 35  FGLVFNAFSEW------AEVRAVVTETSLQFLVHEKAESLFTHRHDIYKDDSEWK--NWK 86
           F +V N ++ W            +   + +FL  +   S    +H+    DSEWK  NW+
Sbjct: 83  FHVVNNDYTHWEMYAIGGSANPTINSQANRFLAPDNRFSKEVTKHED-APDSEWKSWNWR 259

Query: 87  KIGDSVLH 94
             GD  L+
Sbjct: 260 SEGDLFLN 283


>TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Arabidopsis
           thaliana;}, partial (60%)
          Length = 975

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 160 MSIEELGVTLIPPVQHMPTNMREMADPSTIFSTV 193
           +SI    + LIP  +    ++RE ++PS+ FS V
Sbjct: 187 LSIAAFPINLIPATRAHTGDLRERSEPSSNFSFV 86


>TC11194 similar to UP|Q9M548 (Q9M548) Cytosine methyltransferase
           (Modification methylase) (Cytosine-specific
           methyltransferase) , partial (19%)
          Length = 655

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 120 GLCDNLLTSIVRAWDYEKPMFVAPSMDGCMWRNP 153
           G+   LLTSI+R W   + +F     D C+  +P
Sbjct: 383 GMLWGLLTSIMRMWHLLQKVFGKLFQDSCLM*SP 484


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,841,606
Number of Sequences: 28460
Number of extensions: 52380
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of query: 205
length of database: 4,897,600
effective HSP length: 86
effective length of query: 119
effective length of database: 2,450,040
effective search space: 291554760
effective search space used: 291554760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)