TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147013.5 - phase: 0 
         (145 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI418429                                                               96  3e-21
TC16121 similar to UP|Q9MBD6 (Q9MBD6) Ntdin, partial (26%)             45  6e-06
BF177884                                                               41  7e-05
BP057287                                                               35  0.005
TC10326 similar to AAQ89612 (AAQ89612) At5g26850, partial (21%)        30  0.13
TC9791                                                                 30  0.21
BP039944                                                               27  1.4
TC14812 homologue to UP|AAS47511 (AAS47511) Ribosomal protein S6...    26  2.4
TC14672 homologue to UP|Q43106 (Q43106) H(+)-transporting ATPase...    26  3.1
TC9832 similar to UP|AAR92244 (AAR92244) At5g20110, partial (34%)      26  3.1
TC16618                                                                25  4.0
TC14267 similar to UP|O22403 (O22403) ADL2 protein, partial (15%)      25  4.0
TC16283                                                                25  5.3
AV425842                                                               25  6.9
TC13645                                                                25  6.9
AU252010                                                               25  6.9
TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like pro...    24  9.0

>BI418429 
          Length = 474

 Score = 95.5 bits (236), Expect = 3e-21
 Identities = 55/118 (46%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = +3

Query: 30  VVTIDVHAAKNLIQT-GHIYLDVRTVEEFEKGHVDATKIINIPYLLDTPKGRVKNLNFVK 88
           VV +DV AAK+L+ + G+ YLDVRTVEEF K HVD    +NI Y+  T  GRVKN +F+ 
Sbjct: 75  VVNVDVEAAKDLLNSSGYRYLDVRTVEEFNKSHVD--NALNIAYMFSTEAGRVKNPDFLD 248

Query: 89  QVSSSCDKEDCLVVGCQSGKRSFSATSELLADGFKNVHNMGGGYME-WVSNKLPVIQQ 145
           QV++ C  ED L+V C SG R   A  +LL  G+K+V   G   +  W+ + L   QQ
Sbjct: 249 QVAAVCKSEDHLLVACNSGGRGRKAVIDLLDSGYKHVITWGEATLRGWMLDLLGTRQQ 422


>TC16121 similar to UP|Q9MBD6 (Q9MBD6) Ntdin, partial (26%)
          Length = 504

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 23/47 (48%), Positives = 28/47 (58%)
 Frame = +1

Query: 27  GAKVVTIDVHAAKNLIQTGHIYLDVRTVEEFEKGHVDATKIINIPYL 73
           G    ++ V  A  L+  GH YLDVRT EEF+ GH  A   INIPY+
Sbjct: 355 GVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGH--APGAINIPYM 489


>BF177884 
          Length = 509

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 34/122 (27%), Positives = 53/122 (42%), Gaps = 24/122 (19%)
 Frame = +2

Query: 28  AKVVTIDVHAAKNLIQT-GHIYLDVRTVEEFEKGHVDATKIINIPYLL---DTPKGRV-- 81
           A+V  ++   AK LI   G+  LDVR + +FE+ H+ +    ++P  +   D   G +  
Sbjct: 143 AEVKFVNAEQAKELIAVDGYSVLDVRDITQFERAHIKSC--YHVPLFVENKDNDPGTIIK 316

Query: 82  ------------------KNLNFVKQVSSSCDKEDCLVVGCQSGKRSFSATSELLADGFK 123
                              N  FV+ V S    E  ++V CQ G RS +A   L   GF+
Sbjct: 317 RTLHNNFSGLFYGLPFTKPNPEFVQSVKSQIPPESKVLVVCQEGLRSTAAADRLEKAGFE 496

Query: 124 NV 125
           +V
Sbjct: 497 DV 502


>BP057287 
          Length = 531

 Score = 35.0 bits (79), Expect = 0.005
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -3

Query: 121 GFKNVHNMGGGYMEWVSNK 139
           GFK+V NMGGGY++W+ N+
Sbjct: 235 GFKDVSNMGGGYVDWLKNE 179


>TC10326 similar to AAQ89612 (AAQ89612) At5g26850, partial (21%)
          Length = 746

 Score = 30.4 bits (67), Expect = 0.13
 Identities = 26/90 (28%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
 Frame = +2

Query: 26  SGAKVVTIDVHAAKNLIQTGHI--YLDVRTVEEFEKGHVDATKIINIPY--LLDTPKGRV 81
           S  K+V +  +AAKN  +   I  YL+ R  +E   GH+    II   +  LL   K ++
Sbjct: 278 SERKIVKLCEYAAKNPFRIPKIAKYLEERCYKELRSGHIKLVTIITESFNKLLSICKVQI 457

Query: 82  KN-----LNFVKQVSSSCDKEDCLVVGCQS 106
                  LN + ++      E    +GCQS
Sbjct: 458 AYFALDVLNVITELLGYSKDETIQTLGCQS 547


>TC9791 
          Length = 593

 Score = 29.6 bits (65), Expect = 0.21
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +2

Query: 100 LVVGCQSGKRSFSATSELLADGFKNVHNMGGG 131
           L+V CQ G RS +A   L   G+KN+  + GG
Sbjct: 2   LIVACQKGVRSLAACELLYNAGYKNLFWVQGG 97


>BP039944 
          Length = 440

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 27  GAKVVTIDVHAAKNLIQTGHIYLDVRT 53
           G    ++ V  A  L+  GH YLDVRT
Sbjct: 359 GVVPTSVPVRVAHELLLAGHKYLDVRT 439


>TC14812 homologue to UP|AAS47511 (AAS47511) Ribosomal protein S6, complete
          Length = 1138

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = -3

Query: 73  LLDTPKGRVKNLNFVKQVSSSCDKEDCLVVGC 104
           LL  P G ++N+     +SS C +  C V+GC
Sbjct: 110 LLLAPSGGIRNVKLHLAISSGCRR--CTVLGC 21


>TC14672 homologue to UP|Q43106 (Q43106) H(+)-transporting ATPase  , partial
           (14%)
          Length = 828

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 10  PRCLAFFLLLVFVLCSSGAKVV 31
           P C +FFL +VF LCS G+ V+
Sbjct: 180 PLCFSFFLSVVF-LCSEGSLVL 118


>TC9832 similar to UP|AAR92244 (AAR92244) At5g20110, partial (34%)
          Length = 586

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 10/16 (62%), Positives = 13/16 (80%)
 Frame = +2

Query: 8   LLPRCLAFFLLLVFVL 23
           LLP+CL F L+L+F L
Sbjct: 455 LLPKCLCFCLILIFQL 502


>TC16618 
          Length = 1228

 Score = 25.4 bits (54), Expect = 4.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 12 CLAFFLLLVFVLCSSG 27
          C + +LLL F++CSSG
Sbjct: 96 CDSLYLLLYFIICSSG 49


>TC14267 similar to UP|O22403 (O22403) ADL2 protein, partial (15%)
          Length = 1194

 Score = 25.4 bits (54), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 110 SFSATSELLADGFKNVHNMGGGYMEWV 136
           S ++ SELL+DG K V    GG ++W+
Sbjct: 149 SIASVSELLSDGLKIV----GGSLKWI 81


>TC16283 
          Length = 579

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -2

Query: 4   VSANLLPRCLAFFLLLVFVLCSSGAKVVTIDVHAA 38
           ++ +++P C   FL+L +++ SS   V+ + +H+A
Sbjct: 176 IAVDVVPECEEGFLMLGYMVLSSEKMVLGLYLHSA 72


>AV425842 
          Length = 404

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = +3

Query: 99  CLVVGCQSGKRSFSATS 115
           CL  G + G+RSF+ATS
Sbjct: 309 CLCSGFRQGRRSFTATS 359


>TC13645 
          Length = 419

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 127 NMGGGYMEWVSNKLPV 142
           +MG GY+ W S  LPV
Sbjct: 230 DMGAGYIRWDSRPLPV 277


>AU252010 
          Length = 328

 Score = 24.6 bits (52), Expect = 6.9
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 84  LNFVKQVSSSCDKEDCLVVGCQSGK-RSFSATSELLADGFKNVHNMGG 130
           L   K+++  CD +  L++   SGK   + + S  L D  +  H   G
Sbjct: 52  LKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLVDMLERYHKTSG 195


>TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like protein III,
           complete
          Length = 2302

 Score = 24.3 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 94  CDKEDCLVVGCQSGKR 109
           CDK  CL  GCQ   R
Sbjct: 701 CDKVSCLHYGCQEAHR 748


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,644,837
Number of Sequences: 28460
Number of extensions: 34034
Number of successful extensions: 162
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of query: 145
length of database: 4,897,600
effective HSP length: 82
effective length of query: 63
effective length of database: 2,563,880
effective search space: 161524440
effective search space used: 161524440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)