BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147013.12 - phase: 0
(687 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18568 270 4e-73
AV426345 216 1e-56
TC10789 189 1e-48
AV422643 154 6e-38
BP071583 146 9e-36
TC18954 similar to GB|CAA82315.1|435476|HSKERAT9 cytokeratin 9 {... 85 3e-17
BP057633 38 0.006
TC17548 33 0.12
CN825170 32 0.34
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 32 0.45
BP075149 31 0.58
TC14993 similar to UP|O04237 (O04237) Transcription factor, part... 31 0.76
AV420018 30 0.99
TC15149 similar to UP|Q9LVI6 (Q9LVI6) Probable receptor-like pro... 30 0.99
TC11068 similar to GB|AAA28385.1|156990|DROBCD segmentation prot... 30 1.7
BP055549 29 2.2
TC16047 29 2.2
TC19454 29 2.2
BP034485 29 2.2
TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, parti... 29 2.9
>TC18568
Length = 719
Score = 270 bits (691), Expect = 4e-73
Identities = 160/274 (58%), Positives = 195/274 (70%), Gaps = 5/274 (1%)
Frame = +3
Query: 264 QELFAQHNIIRLLVGHLAFETVEEHSKYAIVSMKANSIHAAVVMASNNNNSSSN--LNPK 321
Q+LFAQH+I+RLLV HLAFETV+EHSKY+IV+ SIHA V+ +SNNNN S+N K
Sbjct: 3 QDLFAQHHIVRLLVSHLAFETVQEHSKYSIVT---KSIHAVVIASSNNNNGSNNEVKKEK 173
Query: 322 KGTENEDGVVVGGGNKHGRVSHHPLGERPRN-LHRVITSTMAIHAAS-KQPNEGNEANQ- 378
K E+ED V R+ H PL ++ +N + +V+TSTMA+HA+S K N+GNE Q
Sbjct: 174 KEEEDEDEKEV-----KSRIQH-PLADKSQNQMLKVVTSTMAMHASSNKNSNQGNETTQT 335
Query: 379 NQNILANSNTPNGNGLGNGNGNGNDGGKQGNHNNHQRNYSHSGINMKGRESEDAETKASM 438
+QN +S TP +++YS+SGINMKGRE ED E KA M
Sbjct: 336 SQN---SSQTPA-----------------------KQSYSYSGINMKGRELEDPEVKAKM 437
Query: 439 KEMAARALWHLAKGNVAICRSITESRALLCFSVLLEKGPEAVQYNSAMALMEITAVAEKD 498
K MAARALW LAKGN +ICRSITESRALLC ++LLEKG V+YNSAMA+MEIT VAEKD
Sbjct: 438 KAMAARALWCLAKGNSSICRSITESRALLCLAILLEKGSRDVKYNSAMAVMEITEVAEKD 617
Query: 499 AELRKSAFKPNSPACKAVVDQVLKIIEKADSDLL 532
ELR+SAFKPNSPACKAVVDQVLKII++ D+DLL
Sbjct: 618 PELRRSAFKPNSPACKAVVDQVLKIIDEEDTDLL 719
>AV426345
Length = 407
Score = 216 bits (550), Expect = 1e-56
Identities = 114/134 (85%), Positives = 120/134 (89%), Gaps = 8/134 (5%)
Frame = +1
Query: 398 NGNGNDGGKQGN----HN----NHQRNYSHSGINMKGRESEDAETKASMKEMAARALWHL 449
NG GNDG KQGN HN NHQRNYSHSGINMKGR++ED ETKASMKEMAARALWHL
Sbjct: 7 NGIGNDG-KQGNQPLHHNQNQTNHQRNYSHSGINMKGRDNEDPETKASMKEMAARALWHL 183
Query: 450 AKGNVAICRSITESRALLCFSVLLEKGPEAVQYNSAMALMEITAVAEKDAELRKSAFKPN 509
AKGNV ICRSITESRALLCF+VLLEKG E VQYNSAMA+MEITAVAEKDA+LRKSAFKPN
Sbjct: 184 AKGNVPICRSITESRALLCFAVLLEKGEEKVQYNSAMAVMEITAVAEKDADLRKSAFKPN 363
Query: 510 SPACKAVVDQVLKI 523
SPACKAVVDQ+LKI
Sbjct: 364 SPACKAVVDQLLKI 405
>TC10789
Length = 584
Score = 189 bits (481), Expect = 1e-48
Identities = 97/129 (75%), Positives = 111/129 (85%)
Frame = +2
Query: 553 MIGPLVKLLDEREAEVSREASIALRKFAGSENYLHVDHSNAIISAGGAKHLIQLVYFGEQ 612
+IGPL++LLDERE E++REA+I+L KFA +ENYLH+DHS AII+AGGAKHL+QLVY GE
Sbjct: 2 IIGPLLRLLDEREPELTREATISLMKFACTENYLHLDHSKAIITAGGAKHLVQLVYLGEH 181
Query: 613 MVQIPALVLLSYIALHVPDSEELALAEVLGVLEWASKQSFMQHDETLEELLQEAKSRLEL 672
VQ+PAL LLSYIALHV DSEELA AEVL VLEWASK+ M DETLE LL E+KSRLEL
Sbjct: 182 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKSRLEL 361
Query: 673 YQSRGSRGF 681
YQSRGSR F
Sbjct: 362 YQSRGSRMF 388
>AV422643
Length = 469
Score = 154 bits (388), Expect = 6e-38
Identities = 79/154 (51%), Positives = 111/154 (71%), Gaps = 1/154 (0%)
Frame = +2
Query: 428 ESEDAETKASMKEMAARALWHLAKGNVAICRSITESRALLCFSVLLEKGPEAVQYNSAMA 487
E+ED + K ++ A ALW LA+G+V+ R ITE++ +LC + ++EK +Q+N M
Sbjct: 2 ENEDPQVKLQLRISCAEALWMLARGSVSNSRKITETKGMLCLAKIIEKEQGELQFNCLMT 181
Query: 488 LMEITAVAEKDAELRKSAFKPNSPACKAVVDQVLKIIEKADS-DLLIPCVKAIGNLARTF 546
+MEI A AE +A+LR++AFK NSPA KAVV+Q+L+II++ DS L IP +K+IG+LARTF
Sbjct: 182 IMEIAAAAESNADLRRAAFKTNSPAAKAVVEQLLRIIKEVDSPSLQIPAIKSIGSLARTF 361
Query: 547 KATETRMIGPLVKLLDEREAEVSREASIALRKFA 580
A ETRMI PLV L R+ +V+ EA +AL KFA
Sbjct: 362 PARETRMIEPLVMKLSNRDTDVADEADVALTKFA 463
>BP071583
Length = 552
Score = 146 bits (369), Expect = 9e-36
Identities = 80/167 (47%), Positives = 106/167 (62%)
Frame = -1
Query: 43 LATLLRQAARASSDLYERPTKRIIEETEQVLDKALSLVLKCRANGLMKRVFTIIPAAAFR 102
L TL+R AA S LYERP +R+ ET + L++AL+LV KCR ++ RV +I+ A FR
Sbjct: 534 LRTLVRLAA--SPSLYERPVRRVAAETSKNLERALTLVRKCRRRSILHRVVSIVSATEFR 361
Query: 103 KTSSHLENSIGDVSWLLRVSAPADDRGGEYLGLPPIAANEPILCFIWEQIAMLFTGSQEV 162
K HLE S+GD+ WLL + GG + LPPIA+N+PI+ ++W IA L G
Sbjct: 360 KVLGHLEASVGDMRWLLSILDNDGGGGGIVVSLPPIASNDPIMSWVWSFIASLQMGQLND 181
Query: 163 RSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKADGQENAA 209
R DAA L SLA+ +DR K+I+EEGGV PLLKL KE + + AA
Sbjct: 180 RIDAANELASLAQDNDRNKKIIVEEGGVAPLLKLFKEATSPEAQIAA 40
>TC18954 similar to GB|CAA82315.1|435476|HSKERAT9 cytokeratin 9 {Homo
sapiens;} , partial (3%)
Length = 734
Score = 85.1 bits (209), Expect = 3e-17
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Frame = -3
Query: 30 KQECSELKSKTEKLATLLRQAARASS---DLYERPTKRIIEETEQVLDKALSLVLKCRAN 86
K C EL +K + L LR RA S L ERP +R+ + + LDK LSLV KCR
Sbjct: 375 KPSCRELATKVQILCENLRAVVRAVSANPSLNERPIRRMAADVSKCLDKTLSLVRKCRKQ 196
Query: 87 -GLMKRVFTIIPAAAFRKTSSHLENSIGDVSWLLRVSAPADDRGGEYLGLPPIAANEPIL 145
G+++ V+++ RK S LE+S GD+ WLL + + G L LPPIA+N+PIL
Sbjct: 195 PGVLRHVWSMRTTGDLRKVWSLLESSNGDMMWLLSIF----ESKGTNLSLPPIASNDPIL 28
Query: 146 CFIW 149
++W
Sbjct: 27 AWVW 16
>BP057633
Length = 570
Score = 37.7 bits (86), Expect = 0.006
Identities = 18/61 (29%), Positives = 36/61 (58%)
Frame = -2
Query: 152 IAMLFTGSQEVRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKADGQENAARA 211
+ ++ +GSQ + +AA+ L+ L S ++ L+++EG V PL+ L + G +E A +
Sbjct: 425 VEIIESGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQL 246
Query: 212 I 212
+
Sbjct: 245 L 243
Score = 28.1 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (52%)
Frame = -2
Query: 165 DAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKADGQENAA 209
D A +L+S I EGG+ L+++I+ G G+ENAA
Sbjct: 512 DKAVALLSNLSTITEGRSEIAREGGIPLLVEIIESGSQRGKENAA 378
>TC17548
Length = 502
Score = 33.5 bits (75), Expect = 0.12
Identities = 28/100 (28%), Positives = 40/100 (40%)
Frame = +2
Query: 184 IIEEGGVGPLLKLIKEGKADGQENAARAIGLLGRDAESVEHMIHVGVCSVFAKILKEGPM 243
I GG+ PLLKL+ Q NAA A+ L + ++V I VG + L+EG
Sbjct: 14 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVG----GVQRLQEGEF 181
Query: 244 KVQGVVAWAVSELAANYPKCQELFAQHNIIRLLVGHLAFE 283
VQ L K + H + + V F+
Sbjct: 182 IVQATKDCVAKTLKRLEEKIHDRVLSHLLYLMRVSEKGFQ 301
>CN825170
Length = 539
Score = 32.0 bits (71), Expect = 0.34
Identities = 15/54 (27%), Positives = 29/54 (52%)
Frame = +2
Query: 159 SQEVRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIKEGKADGQENAARAI 212
+ V+ AA L +L + +I+ GG+ ++ ++K GK + +ENA A+
Sbjct: 335 NDNVQMAAAGLLANLPKSERELTMKLIKMGGLDAIISILKTGKMEAKENALSAL 496
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 31.6 bits (70), Expect = 0.45
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +3
Query: 139 AANEPILCFIWEQIAMLFTGSQEVRSDAAASLVSLARGSDRYGKLIIEEGGVGPLLKLIK 198
A N ++ + + +A TG E SL ++ G D I+EEGG+ L++ I+
Sbjct: 714 AVNAGVVKPLVDLVAEQGTGLAEKAMVVLNSLAAVQDGKDA----IVEEGGIAALVEAIE 881
Query: 199 EGKADGQENA 208
+G G+E A
Sbjct: 882 DGSVKGKEFA 911
>BP075149
Length = 480
Score = 31.2 bits (69), Expect = 0.58
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -3
Query: 186 EEGGVGPLLKLIKEGKADGQENAARAI 212
+EGG+ L+++++ G ADG+ENA A+
Sbjct: 457 QEGGIPVLVEVVELGSADGKENATAAL 377
>TC14993 similar to UP|O04237 (O04237) Transcription factor, partial (31%)
Length = 846
Score = 30.8 bits (68), Expect = 0.76
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 388 TPNGNGLGNGNGNGNDGGKQGNHNNH 413
+P G G G G+ G+ GG GN +NH
Sbjct: 361 SPGGRGRGRGSRGGSRGGFSGNASNH 438
>AV420018
Length = 213
Score = 30.4 bits (67), Expect = 0.99
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 182 KLIIEEGGVGPLLKLIKEGKADGQENAARAIGLLGRDAESVEHMIHVGVCSVFAKILKEG 241
+ I+ GGV PL++L + G++ Q AA A+ + E + + GV V +L G
Sbjct: 25 RAIVGHGGVPPLIELCQSGESVSQAAAACALKNISSVPEVRQVLAEEGVVKVMINLLNFG 204
>TC15149 similar to UP|Q9LVI6 (Q9LVI6) Probable receptor-like protein kinase
protein (AT3g17840/MEB5_6), partial (45%)
Length = 1489
Score = 30.4 bits (67), Expect = 0.99
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 392 NGLGNGNGNGNDGG 405
NG+GNGNGNGN G
Sbjct: 123 NGIGNGNGNGNGNG 164
Score = 28.5 bits (62), Expect = 3.8
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = +3
Query: 351 RNLHRVITSTMAIHAASKQPNEGNEANQNQNILANSNTPNGNGLGNGNGNGN 402
RN TST+ + A K P A ++ + + NG G GNGNGNGN
Sbjct: 24 RNKSSNKTSTVDV-ATVKHPESEVPAEKSLH-----DVENGIGNGNGNGNGN 161
>TC11068 similar to GB|AAA28385.1|156990|DROBCD segmentation protein PRD 4
{Drosophila melanogaster;} , partial (53%)
Length = 588
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Frame = +1
Query: 364 HAASKQPNEGNEANQNQNILANSNTP-NGNGLGNGNGNGNDGGKQGNHNNH 413
H P++ N + AN + NG G GNGNG+G + + G H H
Sbjct: 4 HVIHDAPDDHATTTSNVDNGANGHGDGNGYGDGNGNGDGYEHHESG*HARH 156
>BP055549
Length = 512
Score = 29.3 bits (64), Expect = 2.2
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 30 KQECSELKSKTEKLATLLRQAARASSDLYERPTKRIIEETEQVLDKA 76
KQ S L+ +L ++ + +SSDL+ TK EET+++L KA
Sbjct: 503 KQSPSYLEDFQCRLLNSVQSTSFSSSDLFGNITKEEEEETQRILQKA 363
>TC16047
Length = 554
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 4/45 (8%)
Frame = +3
Query: 373 GNEANQNQNILANSNT----PNGNGLGNGNGNGNDGGKQGNHNNH 413
G ++ ILA NT P+G+G +G+G+G+ G N H
Sbjct: 162 GYSNSKISTILATQNTCAVPPSGSGTSSGSGSGDSGSGASRSNLH 296
>TC19454
Length = 622
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = +2
Query: 363 IHAASKQPNEGNEANQNQ-------NILANSNTPNGNGLGNGNGNGNDGGKQGN 409
++A + N GN+ +NQ N A S PN N L N + GG QGN
Sbjct: 116 LNATTMAGNTGNDGVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGAQGN 277
>BP034485
Length = 485
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 395 GNGNGNGNDGGKQGNHNNHQRNYSHSG-INMKGRESEDAETKASMKEM 441
G G G GG +GN N H + G +N G + SM +M
Sbjct: 312 GKSGGKGGGGGGKGNKNGHDHGHGIGGNMNGNGGHMDPMSQLGSMGQM 455
>TC7999 similar to UP|BAD01556 (BAD01556) ERF-like protein, partial (11%)
Length = 690
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/79 (22%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 370 PNEGNEANQNQNILANSNTPNGNGLGNGNGNGNDGGKQGNHNNHQR---NYSHSGINMKG 426
P+ G + + + + N+ +G+GLG+G G+ G ++ Y G+ K
Sbjct: 5 PHVGGISTDSVLVSVDENSGSGSGLGSGTGSEGGGYSPMEFMGSEQIGNGYFGGGLKEKE 184
Query: 427 RESEDAETKASMKEMAARA 445
+E E + ++E A A
Sbjct: 185 KEKETEQKTEVVEEAEAAA 241
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,216,440
Number of Sequences: 28460
Number of extensions: 127698
Number of successful extensions: 672
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of query: 687
length of database: 4,897,600
effective HSP length: 96
effective length of query: 591
effective length of database: 2,165,440
effective search space: 1279775040
effective search space used: 1279775040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147013.12