BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147012.14 + phase: 0
(147 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780939 55 5e-09
BP042382 44 9e-06
AV406592 28 0.84
TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5,... 26 3.2
TC17889 similar to UP|Q94CL1 (Q94CL1) RING finger-like protein (... 25 4.2
TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%) 25 5.4
AV419894 25 5.4
TC17344 homologue to GB|AAM26704.1|20857172|AY102137 AT3g11830/F... 25 5.4
AV779252 25 7.1
BP034615 25 7.1
BP029794 25 7.1
TC7918 UP|AAQ87019 (AAQ87019) VDAC1.1, complete 25 7.1
AW720506 24 9.3
TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete 24 9.3
>AV780939
Length = 548
Score = 55.1 bits (131), Expect = 5e-09
Identities = 45/108 (41%), Positives = 52/108 (47%), Gaps = 1/108 (0%)
Frame = +2
Query: 40 ARWLQSAGLQHLASPLANTAIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFNGESGS 99
+RWLQSAGLQHL S AN L P YG QR +FNG G+
Sbjct: 116 SRWLQSAGLQHLHSSSANP-----LPPLQDYSMYGGGVHRNAQR--------SFNG-GGT 253
Query: 100 ELY-TPTSQTLGGAAVSDGFYSPDFRGDFGAGLLDLHAMDDTELLPEV 146
E Y P + A++ D GD GLLDLHA DTELLPE+
Sbjct: 254 EYYMEPATPPGAHRALTQKKNGDDASGDLSPGLLDLHA-SDTELLPEI 394
>BP042382
Length = 181
Score = 44.3 bits (103), Expect = 9e-06
Identities = 26/46 (56%), Positives = 27/46 (58%)
Frame = +2
Query: 1 MGGQSNAAAAAALYDHAGGAVPLHPAPAGTAPDAGDAVMARWLQSA 46
+ GQ A AAALYDHA A DAGDAVMARWLQSA
Sbjct: 8 VAGQMPQANAAALYDHAA------------ASDAGDAVMARWLQSA 109
Score = 34.3 bits (77), Expect = 0.009
Identities = 22/49 (44%), Positives = 29/49 (58%)
Frame = +3
Query: 22 PLHPAPAGTAPDAGDAVMARWLQSAGLQHLASPLANTAIDQRLLPNLLM 70
P HP PA + AG + L ++G P+A++ IDQRLLPNLLM
Sbjct: 57 PPHPMPATLSWRAG---FSPRLAASGF-----PIASSGIDQRLLPNLLM 179
>AV406592
Length = 429
Score = 27.7 bits (60), Expect = 0.84
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +1
Query: 49 QHLASPLANTAIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFNGESGSELYTPTS 106
+HL + +T D LLPN LF S NFN + +Y PTS
Sbjct: 301 KHLVEDIPDTTSDSNLLPN---------------NLFPSQLSHNFNPRKSTCVYDPTS 429
>TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5, TAC
clone:K19B1 (AT5g62460/K19B1_7), partial (17%)
Length = 451
Score = 25.8 bits (55), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -3
Query: 6 NAAAAAALYDHAGGAVPLHPAPAGTAPDAGDAVMARW 42
++++A++ AGGAVP PA A A G+ W
Sbjct: 284 SSSSASSTS*SAGGAVPEGPAAAAAASRDGEGSEGSW 174
>TC17889 similar to UP|Q94CL1 (Q94CL1) RING finger-like protein
(AT5g19430/F7K24_180), partial (20%)
Length = 541
Score = 25.4 bits (54), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 49 QHLASPLANTAIDQRLLPNLLM 70
QH PL++ A LLPNLL+
Sbjct: 188 QHFLQPLSSLAGGMNLLPNLLL 123
>TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%)
Length = 1268
Score = 25.0 bits (53), Expect = 5.4
Identities = 16/56 (28%), Positives = 23/56 (40%)
Frame = +2
Query: 75 AQSAEEKQRLFKLMRSLNFNGESGSELYTPTSQTLGGAAVSDGFYSPDFRGDFGAG 130
A+ +E+Q + R N E Y PT+ GG + DF G G+G
Sbjct: 791 AKQLKEQQMVMPGHRESNLQKELNR--YIPTAAAFGGICIGALTVLADFMGAIGSG 952
>AV419894
Length = 413
Score = 25.0 bits (53), Expect = 5.4
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = +2
Query: 51 LASPLANTAIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFN 94
L SPL I LL MQ YG + E+ ++L KLM ++ N
Sbjct: 278 LVSPLVFQNI---LLARRWMQNYGMKKLED*EQLVKLMLMVSRN 400
>TC17344 homologue to GB|AAM26704.1|20857172|AY102137 AT3g11830/F26K24_12
{Arabidopsis thaliana;}, partial (28%)
Length = 567
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 20 AVPLHPAPAGTAPDAGDAVMARWLQSAGLQHLASPLANTA 59
++P P+P +AP + AV W+ S+ + SP TA
Sbjct: 179 SMPAPPSPTSSAPPSALAV---WINSSTMIRAPSPSPTTA 289
>AV779252
Length = 367
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -2
Query: 109 LGGAAVSDGF--YSPDFRGDFGAGLL 132
+GG + + YSP+ FGAGLL
Sbjct: 249 IGGVGLVSSYVSYSPEIAASFGAGLL 172
>BP034615
Length = 287
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 116 DGFYSPDFRGDFG-AGLLDLHAMDDT 140
D F GD G +G+L LHA+DDT
Sbjct: 176 DSFLLGSSLGDLGPSGVLLLHALDDT 253
>BP029794
Length = 440
Score = 24.6 bits (52), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -1
Query: 109 LGGAAVSDGF--YSPDFRGDFGAGLL 132
+GG + + YSP+ FGAGLL
Sbjct: 326 IGGVGLVSSYVSYSPEIAASFGAGLL 249
>TC7918 UP|AAQ87019 (AAQ87019) VDAC1.1, complete
Length = 1601
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +2
Query: 30 TAPDAGDAVMARWLQSAGLQHLASPLANTAI 60
T D GDA+ +A H+ SPL NTA+
Sbjct: 599 TLNDKGDAL------NASYYHVVSPLTNTAV 673
>AW720506
Length = 572
Score = 24.3 bits (51), Expect = 9.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 61 DQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFN 94
++RLLPN L+ + K+ L L + +N N
Sbjct: 571 EKRLLPNFLIPSLEKKHTNSKEXLGDLCQKINTN 470
>TC8223 UP|AAQ87021 (AAQ87021) VDAC1.3, complete
Length = 1261
Score = 24.3 bits (51), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 30 TAPDAGDAVMARWLQSAGLQHLASPLANTAIDQRL 64
T D GD++ +A H+ SPL NTA+ L
Sbjct: 548 TLNDKGDSL------NASYYHVVSPLTNTAVGAEL 634
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,048,564
Number of Sequences: 28460
Number of extensions: 22547
Number of successful extensions: 97
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of query: 147
length of database: 4,897,600
effective HSP length: 82
effective length of query: 65
effective length of database: 2,563,880
effective search space: 166652200
effective search space used: 166652200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147012.14