BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147012.13 + phase: 0 /pseudo
(459 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13506 similar to UP|CAE46910 (CAE46910) SUMO protease, partial... 42 2e-04
CB827201 36 0.015
BP056277 34 0.058
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 33 0.099
TC10385 30 0.64
CB827520 30 0.83
AV410614 30 1.1
AV409377 29 1.4
TC12921 29 1.4
AV428818 29 1.9
TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_1... 29 1.9
TC8341 similar to UP|Q94FX1 (Q94FX1) Heme oxygenase 1 (Fragment)... 29 1.9
TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Ar... 29 1.9
TC10607 28 2.4
TC8924 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 28 2.4
TC17121 28 2.4
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 28 2.4
AV764700 28 2.4
AU240129 28 3.2
TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DN... 28 3.2
>TC13506 similar to UP|CAE46910 (CAE46910) SUMO protease, partial (6%)
Length = 405
Score = 42.0 bits (97), Expect = 2e-04
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +3
Query: 441 EHMPYFRLRTAKEILRLKA 459
EHMPYFRLRTAKEILRLKA
Sbjct: 24 EHMPYFRLRTAKEILRLKA 80
>CB827201
Length = 374
Score = 35.8 bits (81), Expect = 0.015
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +3
Query: 21 NRPSPNSPTFKRQKLSTTMSNNTPPPLT----TNATVFRISRYPKTKPPLRREIH-APCS 75
N PSP SP+ STT SN+ P P T +++ ++ P + PL R ++ +P
Sbjct: 180 NPPSPTSPSSPSPTASTTASNSPPTPTTRSTPLSSSAAALNSSPTSSSPLHRRVNLSPAL 359
Query: 76 SRP 78
S P
Sbjct: 360 STP 368
>BP056277
Length = 520
Score = 33.9 bits (76), Expect = 0.058
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 223 GRLKFEIQLNEKRKSAFDLLRPKKELVEEVPREPFVPLTKEEEVEV 268
G L+F + + K ++ L EEVP EPFVPLT EE E+
Sbjct: 388 GSLRFWRKRKDNNKH---VVSEDSSLEEEVPWEPFVPLTDEERAEI 516
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 33.1 bits (74), Expect = 0.099
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +3
Query: 23 PSPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRISRYPKTKPPLRREIHAPCSSRPRKFD 82
P P + + + L + S +TPPPL + T PP+ + + SS P
Sbjct: 333 PRPKPTSLQLRSLLVSASTSTPPPLISTTTA------GPPSPPV--ALPSVSSSTPASSK 488
Query: 83 LSTNLKLTESSNLMASDTTDEL 104
ST L L +S +L A T+ L
Sbjct: 489 TSTRLSLRQSPSLSAPLTSPSL 554
>TC10385
Length = 614
Score = 30.4 bits (67), Expect = 0.64
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 40 SNNTPPPLTTNATVFRISRYPKTKPPLRREI--HAPCSSRPRKFDLSTNLKLTESS 93
S + PPPLTT++++ ++RY PP RR H S+ P +T ++ S
Sbjct: 320 SGSAPPPLTTDSSI--LARYCSKAPPPRRIFPPHPGASTDPTDSSSTTTASISSFS 159
>CB827520
Length = 471
Score = 30.0 bits (66), Expect = 0.83
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = -3
Query: 207 AYKKLLEAVDKRGDTLGRLKFEIQLNEKRKSAFDL 241
A KKL+ + K D++ +L+FE+ L+E++K F++
Sbjct: 358 AIKKLIY*IMKVNDSIVKLEFEVALDERQKHMFNI 254
>AV410614
Length = 217
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 24 SPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRISRYPKTKPPLRREI---HAPCSSRPRK 80
+P P K +T+ + PPP TT+++ R+ R T+P L H P R R
Sbjct: 16 TPKHPRRKNPNHATSTEQD-PPPTTTSSSRLRVRRPHGTEPNLAASAPPSHLPPPPRRRP 192
Query: 81 FDLSTN 86
F +T+
Sbjct: 193FRTATS 210
>AV409377
Length = 420
Score = 29.3 bits (64), Expect = 1.4
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 24 SPNSPTFKRQKLSTTMSNNTPPPLTTN-ATVFRISRYPKTKPPLRREIHAPCSSRPRKFD 82
S N R++LS T S +TPPPLT AT R S RR+ P + +
Sbjct: 193 STNGSRRFRRRLSRTGSTSTPPPLTAQ*ATFARTSSLASR----RRQSSTPSTRTVSRSV 360
Query: 83 LSTNLKLTESSN 94
+T L SS+
Sbjct: 361 STTRTSLLHSSS 396
>TC12921
Length = 399
Score = 29.3 bits (64), Expect = 1.4
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Frame = +1
Query: 23 PSPNSPTFKRQKLSTTMSNNT------PPPLT---TNATVFRISRYPKTKPPLRREIHAP 73
PS + QKL T T PP T T+ T FRIS + PP RR
Sbjct: 31 PSTPK*SIPTQKLHITSIKQTTHHLLNPPTSTLQSTSTTSFRISSRTTSPPPPRRS---- 198
Query: 74 CSSRPRKFDLSTNLKLTESSNL 95
SSR R + K T SS+L
Sbjct: 199 -SSRSRVLSSTL*TKTTASSSL 261
>AV428818
Length = 417
Score = 28.9 bits (63), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (52%)
Frame = +3
Query: 23 PSPNSPTFKRQKLSTTMSNNTPPPLTTNAT 52
PSPNS T ST S +PP T+AT
Sbjct: 255 PSPNSKTATTSPPSTNSSGTSPPSALTSAT 344
>TC14277 similar to UP|Q9SHY3 (Q9SHY3) F1E22.9 (AT1G65720/F1E22_13), partial
(33%)
Length = 941
Score = 28.9 bits (63), Expect = 1.9
Identities = 28/85 (32%), Positives = 37/85 (42%), Gaps = 9/85 (10%)
Frame = +3
Query: 23 PSPNSPTFKRQKLSTTMSN-----NTPPPLTTNATVFRISRY----PKTKPPLRREIHAP 73
PSP SP LST+ +N +T P TTN + +R P PPL P
Sbjct: 201 PSPPSPRSDPSPLSTSTTNPTTSSSTTPKTTTNKSNPNTARLSHAAP*GSPPLLTTTSPP 380
Query: 74 CSSRPRKFDLSTNLKLTESSNLMAS 98
+ PR S+ +L SS L A+
Sbjct: 381 SVTAPR---TSSASRLPSSSALDAA 446
>TC8341 similar to UP|Q94FX1 (Q94FX1) Heme oxygenase 1 (Fragment), partial
(86%)
Length = 1286
Score = 28.9 bits (63), Expect = 1.9
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = +2
Query: 312 YLELLKERERREPQKFLKCHFFNTFF 337
Y + L++ + +PQ F+ CHF+N +F
Sbjct: 779 YAQYLRDLSQNDPQAFI-CHFYNIYF 853
>TC16802 similar to GB|AAP31963.1|30387595|BT006619 At1g01300 {Arabidopsis
thaliana;}, partial (28%)
Length = 812
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/44 (36%), Positives = 23/44 (51%)
Frame = +1
Query: 23 PSPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRISRYPKTKPPL 66
P+P PT K S+T ++PPP N++ IS +T P L
Sbjct: 214 PNPKDPTQKHSHFSSTT*THSPPPKPLNSS--SISGSKETLPEL 339
>TC10607
Length = 411
Score = 28.5 bits (62), Expect = 2.4
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 21 NRPSPNSPTFKRQKLSTTMSNNTPPP-LTT 49
N PSP S +F + S T S + PPP LTT
Sbjct: 317 NTPSPESVSFSARGSSPTSSESPPPP*LTT 406
>TC8924 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (28%)
Length = 778
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/60 (31%), Positives = 26/60 (42%), Gaps = 3/60 (5%)
Frame = +2
Query: 20 HNRPSPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRIS---RYPKTKPPLRREIHAPCSS 76
H+ +P PT ST S + P P T S RYP+T P + + H+ C S
Sbjct: 95 HHVSNPQRPTSSGMS-STVESFSGPRPPTVKPAAAPPSSSRRYPRTPPVVPEDCHSDCDS 271
>TC17121
Length = 641
Score = 28.5 bits (62), Expect = 2.4
Identities = 25/87 (28%), Positives = 39/87 (44%)
Frame = +2
Query: 182 SSMVDAAKMLDNLSLSTKNDLSGVCAYKKLLEAVDKRGDTLGRLKFEIQLNEKRKSAFDL 241
SSM D +L LSTK +++ + + K+ E + R + LGR+ + K
Sbjct: 32 SSMADPDSSAPSLPLSTKENITPISS--KIAELNESRSELLGRI-------QGLKQDLQG 184
Query: 242 LRPKKELVEEVPREPFVPLTKEEEVEV 268
R K + +V R+ L K VEV
Sbjct: 185 WRSKLDTQVKVYRDELSELKKTLNVEV 265
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 28.5 bits (62), Expect = 2.4
Identities = 21/68 (30%), Positives = 31/68 (44%)
Frame = +3
Query: 20 HNRPSPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRISRYPKTKPPLRREIHAPCSSRPR 79
H P P S + ST S+N PP+ A+ F + +P ++ P H P + R
Sbjct: 138 HPPPQPPSHLHHPHRSSTVKSSNHRPPI---ASEFHFTHFPSSRRP-----HRPPAKR-- 287
Query: 80 KFDLSTNL 87
D +TNL
Sbjct: 288 -HD*NTNL 308
>AV764700
Length = 434
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 309 INLYLELLKERERREPQKFLKCHFFNTFFYKKQ 341
+N L+LLKE E + Q ++K T+FY+ Q
Sbjct: 426 VNHLLKLLKELESKLSQFYMKGRLIQTYFYRIQ 328
>AU240129
Length = 300
Score = 28.1 bits (61), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 64 PPLRREIHAPCSSRPRKFDLSTNL 87
PP+ +E H PC + PR + L+ +L
Sbjct: 140 PPIMQETHVPCDTVPRAYVLTHHL 211
>TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (7%)
Length = 488
Score = 28.1 bits (61), Expect = 3.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 19 DHNRPSPNSPTFKRQKLSTTMSNNTPPPLTTNATVFRISRYPKTKPPLR 67
++N + N T TT SN+ PP T A R P T PLR
Sbjct: 300 NNNTTTTNHHTHHNTSSLTTPSNSPTPPPWTTAAHLRSQTPPATDLPLR 446
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,302,381
Number of Sequences: 28460
Number of extensions: 100587
Number of successful extensions: 1005
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of query: 459
length of database: 4,897,600
effective HSP length: 93
effective length of query: 366
effective length of database: 2,250,820
effective search space: 823800120
effective search space used: 823800120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC147012.13