TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147011.10 - phase: 0 
         (165 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like prote...   163  1e-41
AV416016                                                              107  8e-25
AV775102                                                               65  6e-12
BP055095                                                               28  0.80
TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1, ...    27  1.4
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor...    26  3.0
TC15850 similar to UP|Q8LAP4 (Q8LAP4) Contains similarity to MYB...    26  3.0
CB826742                                                               26  3.0
AV778305                                                               26  4.0
CB826632                                                               26  4.0
CB829290                                                               25  5.2
TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protei...    25  5.2

>TC17532 similar to UP|Q9LZ98 (Q9LZ98) ABC transporter-like protein
           (At5g02270), partial (48%)
          Length = 476

 Score =  163 bits (413), Expect = 1e-41
 Identities = 79/89 (88%), Positives = 87/89 (96%)
 Frame = +2

Query: 1   MGLLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIV 60
           MGLLKPF+VLLLDEITVDLDVLARADLL FL+KECDERGATIIYATHIFDGLEDWPT++V
Sbjct: 206 MGLLKPFKVLLLDEITVDLDVLARADLLSFLKKECDERGATIIYATHIFDGLEDWPTHMV 385

Query: 61  YVAHGRLELAMPIEKVKETSKLSLMRTVE 89
           YVAHG+L+LAMP++KVKE SKLSLMRTVE
Sbjct: 386 YVAHGKLQLAMPMDKVKENSKLSLMRTVE 472


>AV416016 
          Length = 320

 Score =  107 bits (268), Expect = 8e-25
 Identities = 52/61 (85%), Positives = 54/61 (88%)
 Frame = -2

Query: 104 KERKAAGLPEFDKQVDGSRVVGGDPARAPVRVTNNGWAAGRLHSTIAGEENFLLSSNRVL 163
           KERK AGLPEF+KQV G+RV GGDP RA VR  NNGWAAGRLHSTIAGEENFLLSSNRVL
Sbjct: 319 KERKDAGLPEFEKQVKGNRVAGGDPGRAAVRAVNNGWAAGRLHSTIAGEENFLLSSNRVL 140

Query: 164 R 164
           R
Sbjct: 139 R 137


>AV775102 
          Length = 494

 Score = 65.1 bits (157), Expect = 6e-12
 Identities = 34/73 (46%), Positives = 42/73 (56%), Gaps = 1/73 (1%)
 Frame = -3

Query: 30  FLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLELAMPIEKVKE-TSKLSLMRTV 88
           F ++EC +R ATI YATHIFDGLE W T + Y+  G L+    I  V E  S  +L+  V
Sbjct: 489 FFKEECVQREATIAYATHIFDGLETWATPLAYIPEGELKRTDTISDVNELKSSANLLSVV 310

Query: 89  EVWLRKERDEDRR 101
           E WLR      RR
Sbjct: 309 ESWLRAAPSLKRR 271


>BP055095 
          Length = 538

 Score = 28.1 bits (61), Expect = 0.80
 Identities = 21/81 (25%), Positives = 37/81 (44%), Gaps = 5/81 (6%)
 Frame = +3

Query: 3   LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIY-----ATHIFDGLEDWPT 57
           L+ P + L +DEI+  LD      + KF+R+       T++      A   F+  +D   
Sbjct: 144 LVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDD--- 314

Query: 58  NIVYVAHGRLELAMPIEKVKE 78
            I+ ++ G++    P E V E
Sbjct: 315 -IILLSEGQIVYQGPRENVLE 374


>TC8542 similar to UP|RK1_PEA (P49208) 50S ribosomal protein L1,
           chloroplast precursor (Fragment), partial (53%)
          Length = 672

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 68  ELAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPE 113
           +L   I  VKET+K   + TVE   R   D     ++ R    LP+
Sbjct: 399 DLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPK 536


>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
           partial (37%)
          Length = 624

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9   VLLLDEITVDLDVLARAD---LLKFLRKECDERGATIIYATH 47
           +L+LDE    LD  ARAD   LLK L+KE      T++  +H
Sbjct: 129 LLILDEPLAGLDWKARADVVKLLKHLKKE-----LTVLVVSH 239


>TC15850 similar to UP|Q8LAP4 (Q8LAP4) Contains similarity to MYB-related
           DNA-binding protein, partial (7%)
          Length = 578

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 42  IIYATHIFDGLEDWPTNIVYVAHGRLELAMPIEKVKE--TSKLSLMRTV 88
           II A HI+  L     NI+   H RL       K+ E   S+LSL + V
Sbjct: 462 IIGAVHIYTNLRTIHFNIIIFFHSRLIYIYTTSKMNEEKQSRLSLAKIV 316


>CB826742 
          Length = 465

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 19/53 (35%), Positives = 23/53 (42%)
 Frame = +1

Query: 91  WLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVVGGDPARAPVRVTNNGWAAG 143
           W R+E D      KER    L E   +  G R+VG +  R    V N G  AG
Sbjct: 178 WQREELDSHVLSHKERFVGSLFEAQNEKRGYRLVGFNRCRF---VCNYGGQAG 327


>AV778305 
          Length = 361

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = +2

Query: 77  KETSKLSLMRTV----EVWLRKERDEDRRQ 102
           K+T  LS+ + V    E+WLRK+ + +RR+
Sbjct: 11  KQTQTLSINQGVVALQEIWLRKKEENNRRK 100


>CB826632 
          Length = 536

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 69  LAMPIEKVKETSKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVV 124
           L +P+ +        L++T    L  +R+ D+   K ++ A  P F   +DGS ++
Sbjct: 99  LGLPVVQPYRQHGRHLIKTSLQVLTLQRETDKVMTKRQRTAFAPNFVHSLDGSHMM 266


>CB829290 
          Length = 546

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (52%)
 Frame = -3

Query: 3   LLKPFQVLLLDEITVDLDVLARADLLKFLRKECDERGATIIYATH 47
           LLK  +VL+LDE T  +D      + + LR+   E  +T+I   H
Sbjct: 457 LLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSE--STVITIAH 329


>TC9934 similar to UP|BAC98494 (BAC98494) AG-motif binding protein-4,
           partial (37%)
          Length = 1050

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 113 EFDKQVDGSRVVGGDPARAPVRVTNNGWAAGRLHSTIAGE 152
           E +++  GS V GG   R      +N  AAG   S  AGE
Sbjct: 104 EEEEEEKGSTVSGGSQDRIEEDSNSNSTAAGDYDSIFAGE 223


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,335,022
Number of Sequences: 28460
Number of extensions: 24364
Number of successful extensions: 124
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of query: 165
length of database: 4,897,600
effective HSP length: 83
effective length of query: 82
effective length of database: 2,535,420
effective search space: 207904440
effective search space used: 207904440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)