Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147010.6 + phase: 0 
         (663 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV411338                                                              268  2e-72
AV422430                                                              234  3e-62
TC15101 similar to UP|Q9LUS2 (Q9LUS2) Chloroplast outer envelope...   187  6e-48
BP037789                                                              184  3e-47
AV422565                                                               97  1e-20
AV779862                                                               64  8e-11
TC8670 weakly similar to UP|Q9ZRD1 (Q9ZRD1) NTGP4 (Fragment), pa...    45  3e-05
TC10477 weakly similar to GB|AAA53276.1|576509|PEAIAP86A GTP-bin...    45  3e-05
TC15189 similar to UP|TO34_PEA (Q41009) Translocase of chloropla...    35  0.050
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla...    32  0.25
BP053926                                                               31  0.73
AU089311                                                               31  0.73
TC12838 UP|Q40196 (Q40196) RAB11F, complete                            30  0.95
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ...    30  1.2
BI419972                                                               29  2.1
TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, parti...    29  2.8
TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase  (L...    29  2.8
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (...    29  2.8
TC19467 homologue to UP|O82134 (O82134) Proliferating cell nucle...    29  2.8
AU089325                                                               29  2.8

>AV411338 
          Length = 429

 Score =  268 bits (685), Expect = 2e-72
 Identities = 126/143 (88%), Positives = 139/143 (97%)
 Frame = +1

Query: 348 KEMAESVKDLPSDYVENVEEESGGAASVPVPMPDMSLPASFDSDTPTHRYRHLDSSNQWL 407
           K+MAES KD PSDY ENVEEESGGAASVPVPMPD++LPASFDSD PTHRYR+LDSSNQWL
Sbjct: 1   KKMAESAKDQPSDYSENVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWL 180

Query: 408 VRPVLETHGWDHDVGYEGLNVERLFVLKDKIPVSFSGQVTKDKKDANVQMEMTSSVKYGE 467
           VRPVLETHGWDHDVGYEGLNVERLFV+++K+P+SFSGQ+TKDKKDANVQME+TSS+K+GE
Sbjct: 181 VRPVLETHGWDHDVGYEGLNVERLFVVREKVPLSFSGQITKDKKDANVQMEVTSSIKHGE 360

Query: 468 GKATSLGFDMQTVGKDLAYTLRS 490
           GKATSLGFDMQTVGKDLAYTLRS
Sbjct: 361 GKATSLGFDMQTVGKDLAYTLRS 429


>AV422430 
          Length = 415

 Score =  234 bits (598), Expect = 3e-62
 Identities = 117/138 (84%), Positives = 125/138 (89%)
 Frame = +2

Query: 177 AAGDMRLMNPVSLVENHSACRTNTAGQRVLPNGQVWKPQLLLLSFASKILAEANALLKLQ 236
           AAGDMRLMNPVSLVENHSACRTN AGQRVLPNGQVWKP LLLLSFASKILAEANALLKLQ
Sbjct: 2   AAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQ 181

Query: 237 DNPREKPYTARARAPPLPFLLSSLLQSRPQLKLPEDQFSDEDSLNDDLDEPSDSGDETDP 296
           D+P  KPYT R+RAPPLPFLLS+LLQSRPQLKLPE+QF DEDS +DDLDE SDS DET+ 
Sbjct: 182 DSPPGKPYTTRSRAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSPDDDLDESSDSDDETEL 361

Query: 297 DDLPPFKPLTKAQIRNLS 314
           D+LPPFK LTKAQ+  LS
Sbjct: 362 DELPPFKALTKAQVEKLS 415


>TC15101 similar to UP|Q9LUS2 (Q9LUS2) Chloroplast outer envelope
           protein-like, partial (10%)
          Length = 616

 Score =  187 bits (474), Expect = 6e-48
 Identities = 90/109 (82%), Positives = 103/109 (93%)
 Frame = +3

Query: 534 VIAGGAMTGRDDVAYGGSLEAQLRDKNYPLGRSLSTLGLSVMDWHGDLAVGCNLQSQIPI 593
           V++GGAM GR DVAYGGSLEAQLRDK+YPLGRSLSTLGLSVMDWHGDLAVGCN+QSQIP+
Sbjct: 3   VVSGGAMAGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSVMDWHGDLAVGCNVQSQIPV 182

Query: 594 GRYTNLVARANLNNRGAGQISIRLNSSEQLQIALIGLIPLLKKVIGYSQ 642
           GR+TNL+ARA+LNNRGAG ISIRLNSSEQLQIAL+GL PL++K+I  +Q
Sbjct: 183 GRHTNLIARAHLNNRGAGPISIRLNSSEQLQIALVGLYPLIRKLISDAQ 329


>BP037789 
          Length = 548

 Score =  184 bits (468), Expect = 3e-47
 Identities = 84/170 (49%), Positives = 120/170 (70%)
 Frame = +1

Query: 361 YVENVEEESGGAASVPVPMPDMSLPASFDSDTPTHRYRHLDSSNQWLVRPVLETHGWDHD 420
           Y E  + E+G  A+VPVP+PDM LP SFDS+ P +RYR L+ ++Q L RPVL++H WDHD
Sbjct: 31  YPEEDDPENGSPAAVPVPLPDMVLPPSFDSENPAYRYRFLEPTSQLLTRPVLDSHSWDHD 210

Query: 421 VGYEGLNVERLFVLKDKIPVSFSGQVTKDKKDANVQMEMTSSVKYGEGKATSLGFDMQTV 480
            GY+G+N+E+   + +K P + + QVTKDKKD ++ ++ + + K+G+  +T  GFD+Q +
Sbjct: 211 CGYDGVNIEQTLAIINKFPGAVTVQVTKDKKDFSLHLDSSIAAKHGDNASTMAGFDIQNI 390

Query: 481 GKDLAYTLRSETKFCNFLRNKATAGLSFTLLGDALSAGVKVEDKLIANKR 530
           GK LAY +R ETKF NF RNK  AG S T LG+ +S G+K ED++   KR
Sbjct: 391 GKQLAYIVRGETKFKNFKRNKTGAGFSVTFLGEDVSTGLKAEDQIALGKR 540


>AV422565 
          Length = 470

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 57/136 (41%), Positives = 75/136 (54%)
 Frame = +3

Query: 16  SCTIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMGTKKVQDVVGMVQGIKVRVIDTPGLL 75
           S TI+V+GK GVGKSST+NSI  E   +   F     +   V     G  + +IDTPGL+
Sbjct: 69  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 248

Query: 76  PSWSDQPHNEKILHSVKRFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITDIFGPPIWF 135
                   N+  L+ +K F+     D++LY+DRLD    D  D  + + ITD FG  IW 
Sbjct: 249 EGGYI---NDMALNLIKCFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 419

Query: 136 NAIVVLTHAASAPPDG 151
            AIV LTHA  +PPDG
Sbjct: 420 RAIVALTHAQFSPPDG 467


>AV779862 
          Length = 534

 Score = 63.9 bits (154), Expect = 8e-11
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
 Frame = -3

Query: 577 WHGDLAVGCNLQSQIPIGRYTNLVARANLNNRGAGQISIRLNSSEQLQIALIGLIPLLKK 636
           W GDLA+G +LQSQ  +GR   +  RA LN + +GQI +  +SSEQ+QIAL+ ++P+ + 
Sbjct: 529 WRGDLALGADLQSQSSLGRSYKVAVRAGLNYKCSGQIRVSTSSSEQVQIALLAILPVARA 350

Query: 637 VI-----GYSQNCSL 646
           V      G S+N S+
Sbjct: 349 VYINFWPGASENYSI 305


>TC8670 weakly similar to UP|Q9ZRD1 (Q9ZRD1) NTGP4 (Fragment), partial
           (71%)
          Length = 1252

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 41/134 (30%), Positives = 63/134 (46%), Gaps = 3/134 (2%)
 Frame = +2

Query: 12  PLDFSCTIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMG--TKKVQDVVGMVQGIKVRVI 69
           P +   T++++G++G GKS+T NSI  +  F +D    G  ++  +    +  G  V VI
Sbjct: 83  PNNEGLTLVLVGRTGNGKSATANSIIGKKVFKSDYSSSGVTSRCERHTTELKDGQTVNVI 262

Query: 70  DTPGLLPSWSDQPHNEKILHSVKRFIKKTPPDIVLYLDRLDMQSR-DFSDMPLLRTITDI 128
           DTPGL   +     +E I   +   IK     I   L    +QSR    +   LR++  +
Sbjct: 263 DTPGL---FDISAESEFIGKEIVNCIKLAKDGIHAVLVVFSVQSRFSKEEETALRSLQML 433

Query: 129 FGPPIWFNAIVVLT 142
           FG  I    IVV T
Sbjct: 434 FGEKIADYMIVVFT 475


>TC10477 weakly similar to GB|AAA53276.1|576509|PEAIAP86A GTP-binding
           protein {Pisum sativum;} , partial (5%)
          Length = 625

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 37/56 (65%)
 Frame = +3

Query: 580 DLAVGCNLQSQIPIGRYTNLVARANLNNRGAGQISIRLNSSEQLQIALIGLIPLLK 635
           ++ +  +LQS+  + R       A+LN+R  GQIS++++SSE LQIAL+G+  + +
Sbjct: 9   EMVLSGSLQSEFRLSRSLRASVGADLNSRKMGQISVKMSSSEHLQIALVGVFSIFQ 176


>TC15189 similar to UP|TO34_PEA (Q41009) Translocase of chloroplast 34 (34
           kDa chloroplast outer envelope protein) (GTP-binding
           protein OEP34) (GTP-binding protein IAP34), partial
           (36%)
          Length = 738

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +3

Query: 186 PVSLVENHSACRTNTAGQRVLPNGQVWKPQLL 217
           PV L+EN   C  N + ++VLPNG  W   L+
Sbjct: 36  PVVLIENSGRCNKNDSDEKVLPNGIAWISNLV 131


>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (40%)
          Length = 620

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 18/42 (42%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
 Frame = +3

Query: 271 EDQFSDEDSLNDDLDEPSD----SGDETDPDDLPPFKPLTKA 308
           ED   DED  +DD DE  D      DE+D DD     P+ KA
Sbjct: 9   EDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKA 134


>BP053926 
          Length = 562

 Score = 30.8 bits (68), Expect = 0.73
 Identities = 21/69 (30%), Positives = 34/69 (48%)
 Frame = +1

Query: 18  TIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMGTKKVQDVVGMVQGIKVRVIDTPGLLPS 77
           T+++ G   VGKSS IN I          +   TK +       + ++ +VIDTPG+L  
Sbjct: 208 TVLICGYPNVGKSSFINKI-TRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGIL-- 378

Query: 78  WSDQPHNEK 86
             D+P  ++
Sbjct: 379 --DRPFEDR 399


>AU089311 
          Length = 344

 Score = 30.8 bits (68), Expect = 0.73
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = -3

Query: 129 FGPPI--WFNAIVVLTHAASAPPDGPNGTPSSYDMFVTQRS-HVVQQAIR---QAAGDMR 182
           F PP   WF  I++L   +  PP G + T S +   +   S  +V++ +     ++ D+ 
Sbjct: 309 FPPPSISWFGTIILLPLRSPEPPSGSSPTVSVFLALILYISVRIVKKHVSTLVDSSADVS 130

Query: 183 LMNPVSLVENHSACRTNTA 201
           + N  SL  N SA    TA
Sbjct: 129 IKNKFSL*ANSSASSVGTA 73


>TC12838 UP|Q40196 (Q40196) RAB11F, complete
          Length = 1099

 Score = 30.4 bits (67), Expect = 0.95
 Identities = 20/60 (33%), Positives = 30/60 (49%)
 Frame = +2

Query: 8   AGQEPLDFSCTIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMGTKKVQDVVGMVQGIKVR 67
           A  E  D+    +++G SGVGKS+ I+      +F  D F + +K    V    + IKVR
Sbjct: 122 AFDEQCDYLFKAVLIGDSGVGKSNLIS------RFAKDEFRLDSKPTIGVEFAYRNIKVR 283


>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
           partial (85%)
          Length = 860

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
 Frame = +2

Query: 3   EQLESAGQEPLDFSCTIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMGTK---------K 53
           E++   G+E  D+   ++++G SGVGKS+ ++      +F  + F + +K         +
Sbjct: 77  EEMARRGEEEYDYLFKVVLIGDSGVGKSNLLS------RFTRNEFCLESKSTIGVEFATR 238

Query: 54  VQDVVGMVQGIKVRVIDTPG 73
             +V G +  +K ++ DT G
Sbjct: 239 TLEVEGRM--VKAQIWDTAG 292


>BI419972 
          Length = 498

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 271 EDQFSDEDSLNDDLDEPSDSGDETDPDDLP 300
           ED  +D+D  ++  D   D G+E DP+D P
Sbjct: 379 EDDDADDDDDDEGEDYSGDEGEEADPEDDP 468


>TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, partial (12%)
          Length = 530

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +1

Query: 324 EVEYREKLFMKKQLKYEKKQRKMMKEMAESVKDLPSDYVENVEEESGGAASVPVPMPDMS 383
           EVE   +++ K+  +YE +++ MM     S   + S         S  + S      ++S
Sbjct: 16  EVEKELEVYRKRVHEYEVREKMMMSRRDGSNNSMRS-------RTSSPSCSNAEDSDELS 174

Query: 384 LPASFDSDTPTHRYRHLDSSNQ 405
           L  + +S      Y H +SSNQ
Sbjct: 175 LDLNHESKEENGSYSHQESSNQ 240


>TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase  (LDH) ,
           partial (49%)
          Length = 866

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 144 AASAPPDGPNGTPSSYDMFVTQRSH--VVQQAIRQAAGDMRL 183
           AA+ PP  P+ TP S D  VT  S   +V    RQ AG+ RL
Sbjct: 483 AAALPPSHPDSTP-SVDYSVTAGSDLCIVTAGARQIAGESRL 605


>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
           protein) (Fragment), partial (15%)
          Length = 543

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 271 EDQFSDEDSLNDDLDEPSDSGDETDPDD 298
           +++  DED  +DD D+  D G+E + DD
Sbjct: 270 DEEEDDEDEDDDDDDDDDDDGEEEEDDD 353


>TC19467 homologue to UP|O82134 (O82134) Proliferating cell nuclear antigen
           (PCNA), partial (46%)
          Length = 450

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 21/85 (24%), Positives = 37/85 (42%)
 Frame = +3

Query: 335 KQLKYEKKQRKMMKEMAESVKDLPSDYVENVEEESGGAASVPVPMPDMSLPASFDSDTPT 394
           K L+    Q  ++K++ ES+K+L +D                         A+FD  T  
Sbjct: 78  KMLELRLVQGSLLKKVLESIKELVND-------------------------ANFDCSTTG 182

Query: 395 HRYRHLDSSNQWLVRPVLETHGWDH 419
              + +DSS+  LV  +L + G++H
Sbjct: 183 FSLQAMDSSHVALVALLLRSEGFEH 257


>AU089325 
          Length = 757

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 7   SAGQEP-LDFSCTIMVLGKSGVGKSSTINSIFDEVKFNTDAFHMGTK-KVQDVVGMVQGI 64
           SA   P  D+   ++++G SGVGKS  +    D+    +    +G   K++ V    + I
Sbjct: 39  SAAMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTI 218

Query: 65  KVRVIDTPG 73
           K+++ DT G
Sbjct: 219 KLQIWDTAG 245


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,074,956
Number of Sequences: 28460
Number of extensions: 129322
Number of successful extensions: 807
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of query: 663
length of database: 4,897,600
effective HSP length: 96
effective length of query: 567
effective length of database: 2,165,440
effective search space: 1227804480
effective search space used: 1227804480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)


Medicago: description of AC147010.6