BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147010.5 - phase: 0
(657 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP041362 110 5e-25
TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, pa... 90 1e-18
AV407274 69 3e-12
AV774562 67 9e-12
TC19406 similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, partial ... 62 3e-10
AV428630 52 4e-07
BP056674 44 1e-04
TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine ... 39 0.003
TC19397 similar to PIR|S47137|S47137 homeotic protein Athb-7 - A... 38 0.005
TC12208 similar to UP|Q8LC03 (Q8LC03) Homeobox gene 13 protein, ... 37 0.010
BP082022 37 0.013
TC18394 similar to UP|O23208 (O23208) Homeodomain protein, parti... 37 0.013
TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1... 34 0.085
TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein... 33 0.15
TC16503 homologue to UP|HKL3_MALDO (O04136) Homeobox protein kno... 33 0.15
TC16944 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, p... 32 0.25
TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragmen... 32 0.32
TC13134 similar to UP|O80409 (O80409) Pharbitis kntted-like gene... 32 0.42
TC18268 weakly similar to UP|Q9C9S6 (Q9C9S6) Kinesin-related pro... 32 0.42
BP079785 32 0.42
>BP041362
Length = 560
Score = 110 bits (276), Expect = 5e-25
Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Frame = +3
Query: 2 KECHHPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNENL 61
KEC HPD+ +R +L+ E+GLEP Q+KFWFQNKRT +K QHER N +LR EN+K+R +N+
Sbjct: 237 KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTSLRTENEKLRADNM 416
Query: 62 KIKEVLKAKICLDCGGPPFPMKDHQNFVQ-DLKQENAQLKQECEKMSSL 109
+ +E L C +CGGP +F + L+ ENA+L++E E++SS+
Sbjct: 417 RYREALSNASCPNCGGP--TAXGEMSFDEHHLRXENARLREEXERISSI 557
>TC19814 homologue to UP|Q94C37 (Q94C37) At1g05230/YUP8H12_16, partial (17%)
Length = 389
Score = 89.7 bits (221), Expect = 1e-18
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Frame = +3
Query: 410 IGVIQTLEGRNSVIKLAQRMVKMFCESLTMPGQLELNHL--TLASIGGIRVSFRSTTDDD 467
+GVI +GR S++KLA+RMV FC ++ + T A +RV R + DD
Sbjct: 51 VGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTISGTGAETDDVRVMTRKSVDDP 230
Query: 468 TSQPNGTIVTAATTLWLPLPALKVFEFLKDPTKRSQWDGLSCGNPMHEIAHISN 521
+P G +++AAT+ WLP+P +VFEFL+D RS+WD LS G + E+AHI+N
Sbjct: 231 -GRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIAN 389
>AV407274
Length = 285
Score = 68.6 bits (166), Expect = 3e-12
Identities = 35/93 (37%), Positives = 56/93 (59%), Gaps = 1/93 (1%)
Frame = +2
Query: 431 KMFCESLTMPGQLELNHLTLASIGG-IRVSFRSTTDDDTSQPNGTIVTAATTLWLPLPAL 489
K FC + + L L ++G +RV R DD +P+G +++AAT++W+P+
Sbjct: 2 KNFCSGVCASSVHKWELLHLGNMGDDMRVMTRKNLDDP-GEPHGIVLSAATSVWMPVSRH 178
Query: 490 KVFEFLKDPTKRSQWDGLSCGNPMHEIAHISNG 522
++F+FL+D RS+WD LS G PM E+ HI+ G
Sbjct: 179 RLFDFLRDEQLRSEWDILSNGGPMQEMVHIAKG 277
>AV774562
Length = 460
Score = 67.0 bits (162), Expect = 9e-12
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Frame = +3
Query: 297 REFNIIRYCKKFDAGVWVIADVSFDSSRP-NTAPLSRGWKHPSGCIIREMPHGGCLVTWV 355
RE ++RYCK+ W I DVS D + +T P S ++R +
Sbjct: 3 REVYLVRYCKQLSGEQWAIVDVSIDKVKTTSTLPSSNAENAHPVALLRTSQMAIAK*SG* 182
Query: 356 EHVEVEDKIHTHYVYRDLVGNYNLYGAESWIKELQRMCERSLGSYVEAIPVEETIGVIQT 415
E + K H +YR +V + +GA WI LQ CER + +P++++ GV
Sbjct: 183 STCECQ-KGAVHTMYRAIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATW 359
Query: 416 LEGRNSVIKLAQRMVKMFCESL 437
E R S++KLAQRM FC ++
Sbjct: 360 AE-RKSILKLAQRMTWGFCHAV 422
>TC19406 similar to UP|Q9FJS2 (Q9FJS2) Homeobox protein, partial (10%)
Length = 546
Score = 62.0 bits (149), Expect = 3e-10
Identities = 24/45 (53%), Positives = 36/45 (79%)
Frame = +1
Query: 2 KECHHPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETN 46
KEC HPD+ +R +L+ ++GL+P+Q+KFWFQN+RT +K Q +R N
Sbjct: 403 KECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDN 537
>AV428630
Length = 342
Score = 51.6 bits (122), Expect = 4e-07
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 2 KECHHPDEAERHQLAVEVGLEPKQIKFWFQN 32
KEC HPD+ +R +L+ E+GLEP Q+KFWFQN
Sbjct: 250 KECPHPDDKQRKELSRELGLEPLQVKFWFQN 342
>BP056674
Length = 566
Score = 43.5 bits (101), Expect = 1e-04
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 3 ECHHPDEAERHQLAVE----VGLEPKQIKFWFQNKRTLLKHQHE----RETNGTLRREND 54
EC P R QL E +EPKQIK WFQN+R K + E + N L N
Sbjct: 172 ECPKPSSLRRQQLIRECPVLANVEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLNAMNK 351
Query: 55 KIRNENLKIKEVLKAKIC 72
+ EN ++++ + +C
Sbjct: 352 LLMEENDRLQKQVSQLVC 405
>TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper
protein 57, partial (51%)
Length = 1629
Score = 38.5 bits (88), Expect = 0.003
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 14 QLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNEN---LKIKEVLKAK 70
++A ++GL+P+Q+ WFQN+R K + + +L + +++ LK K++LKA+
Sbjct: 727 KIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLHSSFESLKSNYDNLLKEKDMLKAE 906
Query: 71 I 71
+
Sbjct: 907 V 909
>TC19397 similar to PIR|S47137|S47137 homeotic protein Athb-7 - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (35%)
Length = 723
Score = 38.1 bits (87), Expect = 0.005
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 QLAVEVGLEPKQIKFWFQNKRTLLK-HQHERE 44
QLA E+GL+P+Q+ WFQNKR K Q ERE
Sbjct: 344 QLARELGLQPRQVAIWFQNKRARWKSKQLERE 439
>TC12208 similar to UP|Q8LC03 (Q8LC03) Homeobox gene 13 protein, partial
(24%)
Length = 660
Score = 37.0 bits (84), Expect = 0.010
Identities = 18/34 (52%), Positives = 23/34 (66%), Gaps = 1/34 (2%)
Frame = +1
Query: 9 EAERH-QLAVEVGLEPKQIKFWFQNKRTLLKHQH 41
E ER QLA +GL+P+QI WFQN+R K +H
Sbjct: 553 EPERKMQLAKALGLQPRQIAIWFQNRRARWKTKH 654
>BP082022
Length = 455
Score = 36.6 bits (83), Expect = 0.013
Identities = 15/58 (25%), Positives = 35/58 (59%)
Frame = -3
Query: 11 ERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNENLKIKEVLK 68
++ LA ++ L P+Q++ WFQN+R K + L++ + + +EN+++++ L+
Sbjct: 402 QKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCETLTDENMRLQKELQ 229
>TC18394 similar to UP|O23208 (O23208) Homeodomain protein, partial (46%)
Length = 846
Score = 36.6 bits (83), Expect = 0.013
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 6 HPDEAERH-QLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRR 51
H E+ER +LA E+ L+P+Q+ WFQN+R K++ E L++
Sbjct: 233 HKLESERKDKLAAELCLDPRQVAVWFQNRRARWKNKKLEEEYSNLKK 373
>TC10145 similar to UP|Q8LJS8 (Q8LJS8) Homeodomain protein GhHOX1, partial
(9%)
Length = 536
Score = 33.9 bits (76), Expect = 0.085
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 591 KSQPNLNAPFGASNNIEDGSLLTLAAQILSTSPHEIDQVLNVEDITDINTHLATTILNVK 650
+S+P + N E GSL T+A QIL+ + L VE + +NT ++ T+ N++
Sbjct: 13 ESRPLVITTRKEEKNTEGGSLFTIAFQILTNASPTAK--LTVESVDSVNTLVSCTLRNIR 186
Query: 651 DAL 653
+L
Sbjct: 187 TSL 195
>TC7954 similar to UP|Q7XAU4 (Q7XAU4) Ethylene responsive protein, partial
(75%)
Length = 1708
Score = 33.1 bits (74), Expect = 0.15
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = -1
Query: 281 LLMNEEMHILSPLVRPREFNIIRYCKKFDAGVWVIADVSFDSSRPNTAPLSR 332
L +N E+H+ P F+II C F S +SS+PNT PLSR
Sbjct: 706 LRLNREIHLGFIAAYPPSFSIISSCSFFS---------SVESSKPNTNPLSR 578
>TC16503 homologue to UP|HKL3_MALDO (O04136) Homeobox protein knotted-1 like
3 (KNAP3), partial (22%)
Length = 723
Score = 33.1 bits (74), Expect = 0.15
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Frame = +1
Query: 6 HPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDK---------I 56
+P E ++ +L E GL+ KQI WF N+R ++ H + T + K I
Sbjct: 130 YPTEEDKARLVQETGLQLKQINNWFINQRK--RNWHSNASTSTALKSKRKRS**C*WLHI 303
Query: 57 RNENLK 62
ENLK
Sbjct: 304 NGENLK 321
>TC16944 similar to UP|Q94KL4 (Q94KL4) BEL1-like homeodomain 1, partial
(29%)
Length = 1198
Score = 32.3 bits (72), Expect = 0.25
Identities = 18/54 (33%), Positives = 27/54 (49%)
Frame = +2
Query: 6 HPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNE 59
+P ++++H LA + GL Q+ WF N R L E +EN+ RNE
Sbjct: 725 YPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENE--RNE 880
>TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragment),
partial (68%)
Length = 1138
Score = 32.0 bits (71), Expect = 0.32
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 6 HPDEAERHQLAVEVGLEPKQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNE 59
+P E ++ +L E GL+ KQI WF N+R ++ H ++ T + K E
Sbjct: 745 YPTEEDKARLVQETGLQLKQINNWFINQRK--RNWHTNPSSATSTKTKRKSAGE 900
>TC13134 similar to UP|O80409 (O80409) Pharbitis kntted-like gene 2, partial
(29%)
Length = 502
Score = 31.6 bits (70), Expect = 0.42
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 6 HPDEAERHQLAVEVGLEPKQIKFWFQNKR 34
+P E+++ +LA GL+ KQI WF N+R
Sbjct: 119 YPTESDKIELAKATGLDQKQINNWFINQR 205
>TC18268 weakly similar to UP|Q9C9S6 (Q9C9S6) Kinesin-related protein,
partial (5%)
Length = 617
Score = 31.6 bits (70), Expect = 0.42
Identities = 28/111 (25%), Positives = 51/111 (45%)
Frame = +2
Query: 24 KQIKFWFQNKRTLLKHQHERETNGTLRRENDKIRNENLKIKEVLKAKICLDCGGPPFPMK 83
+Q+KF Q ++T + + + E R + DK+RNE E+ K LD +
Sbjct: 101 QQLKFTMQLEQTKFEEKKKLEEQDFSRLKKDKVRNE----IEISALKQDLD-----MAKR 253
Query: 84 DHQNFVQDLKQENAQLKQECEKMSSLLASYMEKKISRPEFEQALKSIKSFS 134
++ V L+ + A+ K E EK +E K + + +K +++FS
Sbjct: 254 TYEEHVSQLELQAAESKAEYEK------RIVELKHQLADARKQVKDLEAFS 388
Score = 28.1 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 95 ENAQLKQECEKMSSLLASYMEKKISRPEFEQALKSIKSFSRDYECSS 141
++A CE SS + + K E +L+++ F+R+ CSS
Sbjct: 300 DSAACNSNCETCSSYVLLAISKSCFNAEISISLRTLSFFNREKSCSS 160
>BP079785
Length = 472
Score = 31.6 bits (70), Expect = 0.42
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 6 HPDEAERHQLAVEVGLEPKQIKFWFQNKR 34
+P E E+ QL+ GL+ KQI WF N+R
Sbjct: 365 YPTEEEKLQLSEMTGLDIKQINHWFINQR 279
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,210,897
Number of Sequences: 28460
Number of extensions: 178310
Number of successful extensions: 818
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of query: 657
length of database: 4,897,600
effective HSP length: 96
effective length of query: 561
effective length of database: 2,165,440
effective search space: 1214811840
effective search space used: 1214811840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147010.5