TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147010.11 - phase: 0 /pseudo
         (2172 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP055347                                                               31  2.3
TC8315 similar to UP|Q949G4 (Q949G4) N3 like protein, partial (16%)    30  5.2
AV778424                                                               29  8.9
TC16256 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, p...    29  8.9

>BP055347 
          Length = 538

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 639 LLLVTTSGLVKKSCRKWERVTIWLYTSR*IANQT*YQMCWWI 680
           L L+ T  L+K+ C  WE   IW   S+*+ +    ++ WW+
Sbjct: 411 LYLMGTKVLLKRICEVWEA*LIWRQCSK*VKHM--IRLIWWL 530


>TC8315 similar to UP|Q949G4 (Q949G4) N3 like protein, partial (16%)
          Length = 674

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/57 (33%), Positives = 24/57 (41%)
 Frame = +2

Query: 1517 LERLHAGRCFCLNMILCSKLKRQSKVAFLPIILLTNLLMIINQLSSTSPMKRSCI*N 1573
            L R H     C N +LC+ +           I L +LL + N LS T P    CI N
Sbjct: 419  LIRPHPSLSLCSNNVLCNNIN----------IFLHSLLSVFN*LSQTRPFSFCCIRN 559


>AV778424 
          Length = 444

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (61%)
 Frame = -1

Query: 1200 TTFRYLILMCLLITLLSLRCSPSW 1223
            T F   ++ CLL +L+   C+PSW
Sbjct: 225  TCFTPALISCLLFSLIGFACTPSW 154


>TC16256 similar to UP|Q7Y0H8 (Q7Y0H8) Cinnamoyl CoA reductase, partial
           (32%)
          Length = 475

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -2

Query: 189 *RGMVMDTTRRK-----KRKWGWCQQEPVNPWLPLLLS 221
           *R M+  T RR+     +RK   CQQEP + W+ L+ S
Sbjct: 189 *RAMMQ*TRRRR*HTRYRRKLMMCQQEPASSWILLISS 76


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.354    0.154    0.541 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,096,664
Number of Sequences: 28460
Number of extensions: 638976
Number of successful extensions: 7934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5782
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 6480
length of query: 2172
length of database: 4,897,600
effective HSP length: 105
effective length of query: 2067
effective length of database: 1,909,300
effective search space: 3946523100
effective search space used: 3946523100
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 63 (28.9 bits)