TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147007.4 - phase: 0 
         (419 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19238 weakly similar to UP|Q9ZW88 (Q9ZW88) F5A8.10 protein, pa...   126  8e-30
TC12546 weakly similar to UP|Q9FJ30 (Q9FJ30) Similarity to heat ...    39  0.001
TC8087 homologue to UP|FENR_PEA (P10933) Ferredoxin--NADP reduct...    31  0.33
AV413122                                                               31  0.44
TC14328 homologue to GB|AAG21976.1|10716947|AF263377 SKP1 intera...    30  0.57
TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 i...    29  1.7
TC9092 similar to UP|O82700 (O82700) MtN6 protein, partial (89%)       28  2.8
TC17408 similar to UP|O23638 (O23638) Heat shock protein precurs...    28  3.7
BP052252                                                               28  3.7
BI418540                                                               27  6.3
TC12493 similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (35%)           27  6.3
TC18946 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, partia...    27  8.2
TC18371 similar to UP|ZOG_PHALU (Q9ZSK5) Zeatin O-glucosyltransf...    27  8.2

>TC19238 weakly similar to UP|Q9ZW88 (Q9ZW88) F5A8.10 protein, partial (29%)
          Length = 483

 Score =  126 bits (316), Expect = 8e-30
 Identities = 60/108 (55%), Positives = 79/108 (72%)
 Frame = +3

Query: 312 ISVCFPRLTHLSLSYDLKDGVLHYGLQGLSFLMNVVVLELGWTTISDLFSVWVAGLLEGC 371
           + V F   T  SLSYD++ GV+HYGL G ++L NVV+LELGW  ++DLFS WV GLL+ C
Sbjct: 72  LPVAFHT*TI*SLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRC 251

Query: 372 PNLKKMVIYGYVAEIKTHEECQTFTKFTEFMIQLGRKYSHIKFEFEYE 419
           PNLKK+VI+G V+E K+ EEC+ F  FT  MIQL R+Y+H+   F +E
Sbjct: 252 PNLKKLVIHGEVSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 395



 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 30/54 (55%), Positives = 38/54 (69%), Gaps = 2/54 (3%)
 Frame = +2

Query: 290 LKKLRLWSVVFDDEDEVVDIETISVCFPRLTHL--SLSYDLKDGVLHYGLQGLS 341
           LKK RLW V+FDDEDEVVD+ETI+ CFP L HL   L  +++ G L +  + LS
Sbjct: 5   LKKFRLWDVMFDDEDEVVDLETIASCFPHLNHLISEL*CEIRSGSLWFTRRCLS 166


>TC12546 weakly similar to UP|Q9FJ30 (Q9FJ30) Similarity to heat shock
           transcription factor HSF30, partial (9%)
          Length = 755

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
 Frame = +2

Query: 1   MED----LPVEVVGIILSHLGSARDVLIASLTCKKWREAWQT----HLQTLSFNT----S 48
           MED    LP  ++  ILS L S ++ +  S+  ++W   W++    H +  +++T    +
Sbjct: 143 MEDGISTLPDALLCHILSFLTS-KEAVATSVLSRRWIPLWRSVPTLHFKDANYHTDIGHA 319

Query: 49  DWPLYREICSSHLEMLITCTLFQTKGLQCLTIFM--DDEHEFSVTP--VIAWLMYTRDSL 104
           D  + +++ S H++ +    L +   L     ++  +D  +    P  V  W+       
Sbjct: 320 DHDIVKDVRSRHVQSVYAVILSRDFQLPIKKFYLRLNDVCQPFYDPANVSVWVNAVVQRQ 499

Query: 105 RE-----LRYNVRTSPNFNIIEKCSRKTLEVLTLASNPISGVEPKYHKFPCLKSLSLSFV 159
            E     L Y + ++P  N+    S +TL VL L         P  H FPCLK L L   
Sbjct: 500 LEHLDISLPYPMLSTPRANLSSIFSCRTLVVLKLRGGLELKRFPSVH-FPCLKVLHLQGA 676

Query: 160 SI--SALDLSLLLSACPKLETL 179
            +      L+ LLS CP LE L
Sbjct: 677 LLLHDVPYLAELLSGCPVLENL 742


>TC8087 homologue to UP|FENR_PEA (P10933) Ferredoxin--NADP reductase, leaf
           isozyme, chloroplast precursor  (FNR) , partial (94%)
          Length = 1449

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 17/49 (34%), Positives = 27/49 (54%)
 Frame = +1

Query: 284 ISKASKLKKLRLWSVVFDDEDEVVDIETISVCFPRLTHLSLSYDLKDGV 332
           I K  K  KLRL+S+      +  D +T+S+C  RL + + S ++  GV
Sbjct: 529 IDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDSGEIVKGV 675


>AV413122 
          Length = 399

 Score = 30.8 bits (68), Expect = 0.44
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 147 KFPCLKSLSLSFVSISALDLSLLLSACPKLETL 179
           KFP L+ L +S  S+S   L ++  +CP+L+TL
Sbjct: 254 KFPQLEELDISISSLSKEPLEVIGRSCPRLKTL 352


>TC14328 homologue to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
           partner 1 {Arabidopsis thaliana;}, partial (5%)
          Length = 620

 Score = 30.4 bits (67), Expect = 0.57
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 149 PCLKSLSLSFVSISALDLSLLLSACPKLETLSIV-CPEIAMSDSEASIELSSSSLKDFFV 207
           P L+ L + F  +SA  L+L+   CP LE L +  C  +   D  A+   S + LKD   
Sbjct: 17  PHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDI-ANASSSLAHLKDIKK 193

Query: 208 ESYSFDKLILVADMLENLHLKDCSF--DAFEL 237
            ++   + +   +   +  L D  F  D F +
Sbjct: 194 PNFYIPRSVFHTERYGHWQLYDERFQTDVFRI 289


>TC14746 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
           partner 1 {Arabidopsis thaliana;}, partial (62%)
          Length = 719

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
 Frame = +3

Query: 166 LSLLLSACPKLETLSI-VCPEIAMSDSEASIELSSSSLKDFFVESYSFD 213
           L+L+   CP LE LSI  CP +   DS + I ++   L++  + SY +D
Sbjct: 393 LALVAERCPNLEVLSIRSCPHVT-DDSISRIAVNCPKLRELDI-SYCYD 533


>TC9092 similar to UP|O82700 (O82700) MtN6 protein, partial (89%)
          Length = 1695

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 5/101 (4%)
 Frame = +3

Query: 294 RLWSVVFDDE---DEVVDIETISVCFPRLTHLSLSYDLKDGVLHYGLQGLSFLMNVVVLE 350
           R  +++FDD    D+V DIE      P++  +     L + +L+ GLQG S         
Sbjct: 408 RFSAILFDDGIGMDKVQDIEWHKSFIPKVGRILRVEKLAEKILNEGLQGGS--------- 560

Query: 351 LGWTTISDL--FSVWVAGLLEGCPNLKKMVIYGYVAEIKTH 389
             WT  S +  FS  +  ++    +LK +V Y    +I T+
Sbjct: 561 -SWTLASFIGAFSSQLNSVVGEIYSLKSVVAYYAGLQINTN 680


>TC17408 similar to UP|O23638 (O23638) Heat shock protein precursor, partial
           (15%)
          Length = 644

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/59 (33%), Positives = 30/59 (49%)
 Frame = +1

Query: 110 NVRTSPNFNIIEKCSRKTLEVLTLASNPISGVEPKYHKFPCLKSLSLSFVSISALDLSL 168
           +V ++ +   +EK + K LEVL L  +PI  V  +  K      + L+FV I   DL L
Sbjct: 187 SVSSAKSSPYVEKLAEKDLEVLFLVEDPIDEVAIQNLK----SYMELNFVDIGKEDLVL 351


>BP052252 
          Length = 472

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 292 KLRLWSVVFDDEDEVVDIETISVC-FPRLTHLSL 324
           +LR W  + DD D V  +  +S+  FPRL+HLS+
Sbjct: 254 RLRGWCXMGDDFDNVDYLRHLSLP*FPRLSHLSI 153


>BI418540 
          Length = 518

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 19/64 (29%), Positives = 26/64 (39%), Gaps = 1/64 (1%)
 Frame = +3

Query: 320 THLSLSYDLKDGVLHYGLQGLSFLMNVVVLELGWTTISDLFSVWVAGL-LEGCPNLKKMV 378
           T LS SYD  +         L  L    +    W  + DLF  WV  L   G PN+  + 
Sbjct: 351 TTLSESYDSLE---------LQNLFGEYMASQKWDEVKDLFEAWVRSLDKNGKPNMPDVN 503

Query: 379 IYGY 382
           +Y +
Sbjct: 504 LYNH 515


>TC12493 similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (35%)
          Length = 837

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 16/68 (23%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
 Frame = -3

Query: 137 PISGVEPKYHKFPCLKSLSLSFVSISALDLSLLLSACPKLETLSI-VCPEIAMSDSEASI 195
           P+SG +     FP     SL+ +S++    +L  +    +  +++ V P +   ++ A  
Sbjct: 379 PLSGTKFS*TSFPTSSIFSLNSISVAVTSFNLFTATLRPISMVAL*VVPNVPFPNTSAEA 200

Query: 196 ELSSSSLK 203
             +SS LK
Sbjct: 199 LSNSSKLK 176


>TC18946 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, partial (4%)
          Length = 461

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 377 MVIYGYVAEIKTHEECQTFTKFTEFMIQLGRKYSHIKFEF 416
           M+ Y Y  E  TH+   T  KFT  ++ +  KY H+ F F
Sbjct: 160 MMYYTY*VEGATHDSYFTLLKFTLSLLSI--KYLHLIFLF 273


>TC18371 similar to UP|ZOG_PHALU (Q9ZSK5) Zeatin O-glucosyltransferase
           (Trans-zeatin O-beta-D-glucosyltransferase) , partial
           (14%)
          Length = 433

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 301 DDEDEVVDIETISVCFPRLTHLSLSYDLKDGVLHYGLQGLSFLMNVVVLELGWTTI 356
           D+  EV ++  +++C+ R  H    Y L  G  H+G    +F M VVV+   W T+
Sbjct: 201 DEAREVEELVEMALCWKRNHH---HYHLAWGK-HFGAIAKAFSMAVVVVRSHW*TL 46


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,322,102
Number of Sequences: 28460
Number of extensions: 127673
Number of successful extensions: 684
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of query: 419
length of database: 4,897,600
effective HSP length: 93
effective length of query: 326
effective length of database: 2,250,820
effective search space: 733767320
effective search space used: 733767320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)