BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147007.11 - phase: 0
(145 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB828084 206 2e-54
BP040534 59 3e-10
AV416122 30 0.21
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 0.48
BP048961 28 0.48
TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protei... 28 0.62
TC13377 similar to UP|Q9M5G4 (Q9M5G4) CDK-activating kinase, par... 28 0.81
BP052529 28 0.81
BP042603 27 1.1
BP048314 27 1.4
BP066689 26 2.4
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 26 2.4
NP459444 rac GTPase activating protein 3 [Lotus japonicus] 26 3.1
BP055418 26 3.1
TC10196 homologue to UP|Q39804 (Q39804) BiP isoform B, partial (... 26 3.1
TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratas... 25 4.0
AV411437 25 4.0
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 25 4.0
AV772259 25 4.0
TC8679 homologue to UP|Q43466 (Q43466) Protein kinase 3 , partia... 25 4.0
>CB828084
Length = 528
Score = 206 bits (523), Expect = 2e-54
Identities = 110/142 (77%), Positives = 124/142 (86%), Gaps = 1/142 (0%)
Frame = +1
Query: 5 LFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKEL 64
L RRLAP LAARF++N+ ++ SSSSSSVLHHATSS VEPVHITENCVR+MKEL
Sbjct: 1 LIRRLAPSLAARFRQNERFLNF--SSSSSSVLHHATSSSY---VEPVHITENCVRRMKEL 165
Query: 65 DANESSSGGKMLRLSVETGGCSGFQYAFNLDD-RFNSDDRVFEKEGIKLVVDNISYDFVK 123
+A+ES++ KMLRLSVETGGCSGFQYAF+LDD NSDDRVFEKEGIKLVVD++SYDFVK
Sbjct: 166 EASESTTSRKMLRLSVETGGCSGFQYAFDLDDDSVNSDDRVFEKEGIKLVVDSVSYDFVK 345
Query: 124 GATVDYVEELIRSAFIVSQAHL 145
GATVDYVEELIRSAF+VSQ HL
Sbjct: 346 GATVDYVEELIRSAFVVSQLHL 411
>BP040534
Length = 577
Score = 59.3 bits (142), Expect = 3e-10
Identities = 34/101 (33%), Positives = 56/101 (54%), Gaps = 3/101 (2%)
Frame = -3
Query: 41 SSPSSPDVEP-VHITENCVRKMKELDANESSSGGKMLRLSVETGGCSGFQYAFNLDDRFN 99
++PSS V P V +T+ ++ + + + ++ LR+ V+ GGCSG Y+ + +DR N
Sbjct: 545 AAPSSGSVAPAVSLTDQALKHLNRMRSEKNQD--LCLRIGVKQGGCSGMSYSMDFEDRAN 372
Query: 100 S--DDRVFEKEGIKLVVDNISYDFVKGATVDYVEELIRSAF 138
+ DD + E EG +V D S F+ G +DY + LI F
Sbjct: 371 TRPDDSIIEYEGFVIVCDPKSLLFIFGMQLDYSDALIGGGF 249
>AV416122
Length = 414
Score = 29.6 bits (65), Expect = 0.21
Identities = 28/72 (38%), Positives = 36/72 (49%), Gaps = 4/72 (5%)
Frame = -3
Query: 25 SSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSS----GGKMLRLSV 80
SS SSSSSSS L ++SS SSP ++ + L E SS G +L LS
Sbjct: 364 SSSSSSSSSSSLSSSSSSSSSPS-NWTSLSGSLSSLAASLGWEEQSSVAETAGWLLLLSF 188
Query: 81 ETGGCSGFQYAF 92
E+G SG +F
Sbjct: 187 ESGLGSGVAASF 152
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 28.5 bits (62), Expect = 0.48
Identities = 19/39 (48%), Positives = 22/39 (55%)
Frame = -3
Query: 7 RRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSS 45
R L PLL F + SS SSSSSSS ++SS SS
Sbjct: 912 RALLPLLLLLFPSPSSSSSSSSSSSSSSSSSSSSSSSSS 796
>BP048961
Length = 543
Score = 28.5 bits (62), Expect = 0.48
Identities = 14/22 (63%), Positives = 15/22 (67%)
Frame = +1
Query: 25 SSFSSSSSSSVLHHATSSPSSP 46
SS SSS S LH+ SSPSSP
Sbjct: 82 SSSSSSPLSQTLHYGPSSPSSP 147
>TC11039 weakly similar to UP|O65074 (O65074) YGL010w-like protein, partial
(79%)
Length = 733
Score = 28.1 bits (61), Expect = 0.62
Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 4/31 (12%)
Frame = +1
Query: 20 NQNIISSFSSSSS----SSVLHHATSSPSSP 46
+Q+ SSF SSS SS HH +S PSSP
Sbjct: 100 SQSTSSSFGQSSSPLSSSSTSHHLSSLPSSP 192
>TC13377 similar to UP|Q9M5G4 (Q9M5G4) CDK-activating kinase, partial (26%)
Length = 439
Score = 27.7 bits (60), Expect = 0.81
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = +3
Query: 28 SSSSSSSVLHHATSSPSSPDVE 49
SSSSSSSVL SSP+ P++E
Sbjct: 300 SSSSSSSVLTSPPSSPTPPNME 365
>BP052529
Length = 394
Score = 27.7 bits (60), Expect = 0.81
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Frame = +3
Query: 42 SPSSPDVEP-VHITENCVRKMKELDANESSSGGK-------MLRLSVETGGCSGFQYAFN 93
SPSSPDV P + E K + + GK + ++SV FQY+
Sbjct: 138 SPSSPDVSPSIETVEADPIKFSIISRQGVGTAGKRIPVLTNLFKVSVNAPDAIFFQYSVT 317
Query: 94 LDDRFNSDDRVFEKEGI-KLVVDNI 117
+ D RV E +GI + ++D++
Sbjct: 318 I---CMEDKRVIESKGIGRKLIDSV 383
>BP042603
Length = 565
Score = 27.3 bits (59), Expect = 1.1
Identities = 25/84 (29%), Positives = 35/84 (40%)
Frame = +3
Query: 18 QRNQNIISSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSSGGKMLR 77
++ + +SS ++SS + A SPSS P T V M L N SSS M+
Sbjct: 270 RKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTAGDVMSMPALPHNGSSSKPLMMF 449
Query: 78 LSVETGGCSGFQYAFNLDDRFNSD 101
+ TG + DRF D
Sbjct: 450 GTDGTGTLTSPSNQLADVDRFVED 521
>BP048314
Length = 394
Score = 26.9 bits (58), Expect = 1.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 25 SSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSSGGK 74
SS SSSSSSS + SP+ P+ P+ K + SSS K
Sbjct: 227 SSSSSSSSSSSSSSSCLSPAPPETSPLIFLPITNTSFKSIQTPPSSSEEK 78
>BP066689
Length = 470
Score = 26.2 bits (56), Expect = 2.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 25 SSFSSSSSSSVLHHATSSPSSP 46
SS SSSSSSS +SSPS+P
Sbjct: 230 SSSSSSSSSSSCSSLSSSPSTP 165
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 26.2 bits (56), Expect = 2.4
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -3
Query: 25 SSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSSGGKMLRLSVETGG 84
SS SSSSSS ++SSPSS + + ++ SSS L + GG
Sbjct: 385 SSLPSSSSSSSSSSSSSSPSSSS------SSSSSSSSSSSSSSSSSSSSSSLSV*TGLGG 224
Query: 85 CSG 87
SG
Sbjct: 223 PSG 215
Score = 25.8 bits (55), Expect = 3.1
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 26 SFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSSGGKMLRLSVETG 83
SF S+S+SS+ ++SS SS + + ++ SSS LSV TG
Sbjct: 406 SFPSTSTSSLPSSSSSSSSSSSSSSPSSSSSSSSSSSSSSSSSSSSSSSSSSLSV*TG 233
>NP459444 rac GTPase activating protein 3 [Lotus japonicus]
Length = 1300
Score = 25.8 bits (55), Expect = 3.1
Identities = 21/49 (42%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = -2
Query: 3 TSLFRRLAPLLAARFQRNQNIISSFSS-SSSSSVLHHATSSPSSPDVEP 50
TS R A L A N +S F+S ++SSSVLH T S SP P
Sbjct: 642 TSAMRSRAQLSKA----NSVGLSCFTS*TNSSSVLHSRTCSGESPSSTP 508
>BP055418
Length = 526
Score = 25.8 bits (55), Expect = 3.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 25 SSFSSSSSSSVLHHA 39
SS SSSSSSS +HHA
Sbjct: 16 SSSSSSSSSSFIHHA 60
>TC10196 homologue to UP|Q39804 (Q39804) BiP isoform B, partial (17%)
Length = 562
Score = 25.8 bits (55), Expect = 3.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 14 AARFQRNQNIISSFSSSSSSSVLHHATSSPSSP 46
AA+ + QNI SS SSSSS A S P +P
Sbjct: 381 AAQVKSEQNI*SSS*ESSSSSPSPDAPSPPGAP 283
>TC9682 similar to UP|Q8VZC0 (Q8VZC0) DTDP-glucose 4-6-dehydratase-like
protein, partial (29%)
Length = 731
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 22 NIISSFSSSSSSSVLHHATSSPSSP 46
N +SS SSS SSS ++S+P SP
Sbjct: 325 NSVSSSSSSESSSAPPSSSSNPLSP 399
Score = 25.4 bits (54), Expect = 4.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 17 FQRNQNIISSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSS 71
+ NQ I+ + + H + P++PD P T + V + ++ESSS
Sbjct: 199 YTSNQA*ITDATEKWEPKLHHTPPNPPNTPDPSPDPSTTSSVNSVSSSSSSESSS 363
>AV411437
Length = 417
Score = 25.4 bits (54), Expect = 4.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 25 SSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVRKMKELDANESSSGG 73
SS S SSSS ++ S+PSS + + + EL +S GG
Sbjct: 150 SSSESVSSSSNCSNSPSTPSSSSSSSSSSSSSAIVSCAELPETAASGGG 4
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 25 SSFSSSSSSSVLHHATSSPSSPDVEP 50
SS SSSSSS+VL ++S ++P P
Sbjct: 219 SSSSSSSSSAVLASPSTSSTAPTTPP 296
>AV772259
Length = 525
Score = 25.4 bits (54), Expect = 4.0
Identities = 20/48 (41%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = +2
Query: 1 MQTSLFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHA--TSSPSSP 46
+ T F+ LL Q ++S SSSS S LHH+ TSSPS P
Sbjct: 17 LSTLHFQPTTTLLLLHSMSIQAFLAS-SSSSFHSHLHHSSTTSSPSVP 157
>TC8679 homologue to UP|Q43466 (Q43466) Protein kinase 3 , partial (70%)
Length = 972
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 25 SSFSSSSSSSVLHHATSSPSSP 46
SS SSS+SSS ++SSPS P
Sbjct: 693 SSSSSSTSSSTSSSSSSSPSHP 628
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.131 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,259,564
Number of Sequences: 28460
Number of extensions: 34514
Number of successful extensions: 613
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of query: 145
length of database: 4,897,600
effective HSP length: 82
effective length of query: 63
effective length of database: 2,563,880
effective search space: 161524440
effective search space used: 161524440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147007.11