BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147006.6 + phase: 0 /pseudo
(797 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po... 56 3e-08
AV780221 49 4e-06
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 46 3e-05
BI420337 32 0.51
AV426437 30 1.1
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 30 1.5
AV426647 29 2.5
TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-r... 29 2.5
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer... 29 2.5
BP039014 29 2.5
AU251550 28 4.3
BP063071 28 4.3
AV410862 28 5.7
AV767121 28 5.7
TC14637 weakly similar to UP|FUS_HUMAN (P35637) RNA-binding prot... 28 5.7
AV414016 28 5.7
BP042407 28 5.7
TC16404 similar to UP|P93320 (P93320) Cdc2MsC protein, partial (... 28 7.4
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 28 7.4
TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precu... 27 9.7
>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
polymerase-like protein, partial (3%)
Length = 530
Score = 55.8 bits (133), Expect = 3e-08
Identities = 36/126 (28%), Positives = 62/126 (48%), Gaps = 1/126 (0%)
Frame = -3
Query: 7 KLKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELWR 66
K K+ L E + + + + L ++ L G + E+ K +L +LWR
Sbjct: 450 KTTNTKLALTEWHHQNFSRADKEIAELKNQLEHLQNYSNSGEDWQ-EIKQRKMRLKDLWR 274
Query: 67 LLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCR 125
++ +QRSR +WLK GD N+KFFH R+ N I+ +++ +G WV S + R
Sbjct: 273 ---QEELFWSQRSRIKWLKSGDKNTKFFHASTVQRRERNRIERIKDMQGTWVRSQLAINR 103
Query: 126 KVVNYF 131
V +++
Sbjct: 102 DVPDFY 85
>AV780221
Length = 461
Score = 48.5 bits (114), Expect = 4e-06
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +3
Query: 550 FYGEEWEGVKKISWVKWELVCQNKRNGSLGVNSLSL 585
F+G E EG KKI+WVKW VC+ K G LGV +L L
Sbjct: 111 FFGREVEGGKKIAWVKWSTVCRPKDEGGLGVQNLGL 218
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 45.8 bits (107), Expect = 3e-05
Identities = 37/115 (32%), Positives = 53/115 (45%), Gaps = 2/115 (1%)
Frame = -3
Query: 80 RSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRKVVNYFTNHFAED 138
R + LK GD N++FFH R+ N I +++ G WV +V VNYF++ ++
Sbjct: 590 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 411
Query: 139 RWDRPRLDRVDFESL-TEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
R L T+ N L A S EI+E V K+PG +G N F
Sbjct: 410 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLF 246
>BI420337
Length = 397
Score = 31.6 bits (70), Expect = 0.51
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = -2
Query: 384 RWTVVCLR--ALRLVIVVCWFLTCNMLMMLCVLVNQRWIIFGLLNLSLEALRWRWGSRLT 441
RW +V + R +I+V W C L VLV+ RW L+ L L W W R+
Sbjct: 330 RWVLVWVLWWRRRRLIIVSW---CTWWWRL-VLVHWRWGRRVLVWL----LWWWWW*RVM 175
Query: 442 SQRAR**E*MW----IMSLWKWLSII*IVVC 468
+R R* W I+ LW W I ++VC
Sbjct: 174 VRRRR*VHWWWWRVVIVRLWWWWRCIDVIVC 82
>AV426437
Length = 303
Score = 30.4 bits (67), Expect = 1.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 556 EGVKKISWVKWELVCQNKRNGSLGVNS 582
E +KI+W+ WE +C+ K LGV +
Sbjct: 214 ENQRKIAWINWETICKPKWLRGLGVKN 294
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 30.0 bits (66), Expect = 1.5
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = +1
Query: 723 LLRSCGRVWRLRRW*PLLGKLSLAMFRQKLISL*GMCLTWKNL 765
L RS G VWR RRW L M R +L G L WK L
Sbjct: 751 LWRSKGLVWRRRRWWCSTAWLRFRMGRMRLWKKVG*LLLWKPL 879
>AV426647
Length = 430
Score = 29.3 bits (64), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 275 WWTGSWW*MSWWIM*RRK 292
W SWW WW++*RRK
Sbjct: 138 WCGRSWWMRWWWML*RRK 85
>TC14075 homologue to UP|PRP2_MEDTR (Q40375) Repetitive proline-rich cell
wall protein 2 precursor, partial (98%)
Length = 1524
Score = 29.3 bits (64), Expect = 2.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 268 LFLNVATWWTGSWW*MSWWI 287
L+ + WW +WW ++WW+
Sbjct: 849 LYGGLVHWWLLNWWLVNWWL 790
Score = 27.7 bits (60), Expect = 7.4
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 262 FLHLNRLFLNVATWWTGSWW*MSWWIM*RRKSKNVLFLRWTSRRRMIRLIG-VSW 315
F++ L + WW +W ++WW++ + N FL W R + G V W
Sbjct: 1107 FVNWRLLNWGLVNWWLLNWRLVNWWLL-NWRLVNWRFLNWGLINRWLLYWGLVHW 946
>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
partial (25%)
Length = 563
Score = 29.3 bits (64), Expect = 2.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -3
Query: 275 WWTGSWW*MSWW 286
WW+G WW WW
Sbjct: 162 WWSGRWWWWWWW 127
>BP039014
Length = 566
Score = 29.3 bits (64), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 275 WWTGSWW*MSWWIM*RRK 292
W SWW WW++*RRK
Sbjct: 121 WCGRSWWMRWWWML*RRK 68
>AU251550
Length = 329
Score = 28.5 bits (62), Expect = 4.3
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -2
Query: 275 WWTGSWW*MSWWIM*RRK-----SKNVLFLRWTSR 304
W G WW M WW M + S++V RWT R
Sbjct: 244 WRWGRWWAMWWWWMVMPEWWWWGSRSVRIPRWTWR 140
>BP063071
Length = 458
Score = 28.5 bits (62), Expect = 4.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 142 RPRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPN 186
R R+D+ ++ + E G L LL + ++ DGG+SPG N
Sbjct: 193 RHRVDKKTYKQGSIREKGALAPIKRLLSVSKLSYPQDGGRSPGFN 327
>AV410862
Length = 387
Score = 28.1 bits (61), Expect = 5.7
Identities = 20/72 (27%), Positives = 31/72 (42%)
Frame = +2
Query: 66 RLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVVSPFEVCR 125
+ +K K TLI + + ANS H K ++ A +N GW PF V
Sbjct: 56 KAVKDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVD---ATRKNLGWPHEPFHVPE 226
Query: 126 KVVNYFTNHFAE 137
+V +++ H E
Sbjct: 227 EVKKHWSRHVPE 262
>AV767121
Length = 525
Score = 28.1 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +2
Query: 556 EGVKKISWVKWELVCQNKRNGSLGVNSL 583
E KI+ VKW VC+ K G LG+ L
Sbjct: 167 ENENKIA*VKWTDVCKPKELGGLGIKDL 250
>TC14637 weakly similar to UP|FUS_HUMAN (P35637) RNA-binding protein FUS
(Oncogene FUS) (Oncogene TLS) (Translocated in
liposarcoma protein) (POMp75) (75 kDa DNA-pairing
protein), partial (6%)
Length = 1332
Score = 28.1 bits (61), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Frame = +1
Query: 269 FLNVATWWT-GSWW*MSWW 286
F V WW+ G WW WW
Sbjct: 871 FCEVPWWWSRGPWWAFPWW 927
>AV414016
Length = 417
Score = 28.1 bits (61), Expect = 5.7
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +2
Query: 403 LTCNMLMMLCVLVNQRWIIFGLLNLSLEALRWRWGSRLTSQRAR**E*MWIMSLWKWLSI 462
+ CN L + W L SL+ +R R S L Q +WKW S
Sbjct: 140 IKCNDLYAFIIGSYVIWTAVAGLRYSLDQIRKRRISVLLGQ------------VWKWCS- 280
Query: 463 I*IVVCGVPVLNIWVF 478
IVV +L+IW+F
Sbjct: 281 --IVVKSSALLSIWIF 322
>BP042407
Length = 464
Score = 28.1 bits (61), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 632 RRKGRPW*GRWGWCR 646
R+K R W GRW WC+
Sbjct: 116 RKKRRRWRGRWVWCK 72
>TC16404 similar to UP|P93320 (P93320) Cdc2MsC protein, partial (15%)
Length = 584
Score = 27.7 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +1
Query: 434 WRWGSRLTSQRAR**E*MWIMSLWKWL 460
W W S+L+S R +W +S W WL
Sbjct: 130 WGWSSKLSSTRRS----IWGLSSWSWL 198
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 27.7 bits (60), Expect = 7.4
Identities = 23/67 (34%), Positives = 27/67 (39%), Gaps = 4/67 (5%)
Frame = -3
Query: 433 RWRWGSRLTSQRAR**E*MWIMSLWKWLSII*IVVCGVPVLNIWVFRWVLTRIVCLHGSR 492
RWRWG + +R R* W W * VV G W W R+V + G R
Sbjct: 255 RWRWGRFVIVRRGR*-------RGWWWR---*FVVVG----RWWRM*WWWGRLVVVWGGR 118
Query: 493 ----WWR 495
WWR
Sbjct: 117 RGRWWWR 97
>TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75)
(NGM-75), partial (49%)
Length = 803
Score = 27.3 bits (59), Expect = 9.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 272 VATWWTGSWW*MSWWIM*RRKSKNVLFLRW 301
V WW W + WW++ K L +RW
Sbjct: 96 VLWWWLFMGWFLKWWLL-----KGWLLMRW 22
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.356 0.160 0.625
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,097,216
Number of Sequences: 28460
Number of extensions: 358206
Number of successful extensions: 4750
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3327
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 3821
length of query: 797
length of database: 4,897,600
effective HSP length: 98
effective length of query: 699
effective length of database: 2,108,520
effective search space: 1473855480
effective search space used: 1473855480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC147006.6