BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.2 - phase: 0
(840 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10412 homologue to UP|Q9FVE8 (Q9FVE8) Plasma membrane Ca2+-ATP... 313 e-160
BP066255 298 8e-82
AV779952 244 7e-66
TC17656 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transport... 213 8e-56
BF177756 210 9e-55
AV409404 165 3e-41
AV417225 147 5e-36
TC17282 similar to UP|Q8L8A0 (Q8L8A0) Type IIB calcium ATPase MC... 112 2e-25
TC11343 similar to PIR|B96660|B96660 protein F2K11.18 [imported]... 96 2e-20
AV780873 79 3e-15
TC14980 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-tran... 70 1e-12
TC19919 homologue to UP|Q7Y068 (Q7Y068) Plasma membrane H+-ATPas... 58 5e-09
TC10275 similar to UP|Q7Y051 (Q7Y051) Paa2 P-type ATPase, partia... 55 6e-08
AU088926 45 6e-05
AV409298 42 5e-04
TC18638 similar to UP|Q8W0V0 (Q8W0V0) Type IIB calcium ATPase, p... 40 0.002
TC18250 similar to UP|Q8L741 (Q8L741) AT3g13690/MMM17_12, partia... 40 0.002
BP042017 35 0.064
AU240120 33 0.14
TC19888 weakly similar to PIR|T08551|T08551 Ca2+-transporting AT... 32 0.54
>TC10412 homologue to UP|Q9FVE8 (Q9FVE8) Plasma membrane Ca2+-ATPase,
partial (33%)
Length = 1061
Score = 313 bits (801), Expect(2) = e-160
Identities = 153/189 (80%), Positives = 170/189 (88%)
Frame = +2
Query: 365 DSKAEREACKIVKVEPFNSEKKRMGVVVEQPDGSVRAHCKGASEIILAACDKVIDLNGDV 424
D + ER+AC +VKVEPFNS KKRM V VE P G +RAHCKGASEI+LAACDKV++ NG+V
Sbjct: 2 DFQGERQACNLVKVEPFNSTKKRMSVAVELPGGGLRAHCKGASEIVLAACDKVLNSNGEV 181
Query: 425 VALDGESTNYLNSIINQFANEALRTLCLAYMELENGFAAEDPIPASGYTCIGIVGIKDPV 484
V LD ES N+LNS INQFA+EALRTLCLAYMELENGF+AEDPIP SG+TCIG+VGIKDPV
Sbjct: 182 VPLDEESINHLNSTINQFASEALRTLCLAYMELENGFSAEDPIPLSGFTCIGVVGIKDPV 361
Query: 485 RPGVKQSVAECRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELF 544
RPGVK+SVA CRSAGI VRMVTGDNINTAKAIARECGILTDDGIAIEGP+FREK+ EEL
Sbjct: 362 RPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSLEELL 541
Query: 545 ELIPKIQVM 553
ELIPKIQV+
Sbjct: 542 ELIPKIQVL 568
Score = 271 bits (694), Expect(2) = e-160
Identities = 136/144 (94%), Positives = 142/144 (98%)
Frame = +3
Query: 567 QLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVA 626
QLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVA
Sbjct: 630 QLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVA 809
Query: 627 RWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALAL 686
+WGRSVYINIQKFVQFQLTVNVVAL+VNFTSAC+TG+APLTAVQLLWVNMIMDTLGALAL
Sbjct: 810 KWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALAL 989
Query: 687 ATEPPTDDLMKREPVGRKGDFINN 710
ATEPP DDLMKR PVGRKG+FI+N
Sbjct: 990 ATEPPKDDLMKRSPVGRKGNFISN 1061
>BP066255
Length = 540
Score = 298 bits (764), Expect(2) = 8e-82
Identities = 146/165 (88%), Positives = 159/165 (95%)
Frame = +2
Query: 145 MLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAVITFTVLVKGHL 204
ML+TTVGMRTQWGKLMATL+EGGDDETPLQVKLNGVATIIGKIGL FA++TF VLV+G +
Sbjct: 38 MLITTVGMRTQWGKLMATLTEGGDDETPLQVKLNGVATIIGKIGLFFAIVTFAVLVQGLV 217
Query: 205 SHKIREGNFWRWTGDNAMEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKAL 264
SHK+++ +FW WTGD+A+EMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKAL
Sbjct: 218 SHKLQQDSFWSWTGDDALEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKAL 397
Query: 265 VRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVSN 309
VRHLAACETMGSATTICSDKTGTLTTN MTVVKTCICMNS+EVSN
Sbjct: 398 VRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICMNSQEVSN 532
Score = 23.5 bits (49), Expect(2) = 8e-82
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +3
Query: 133 LSGTKVQDGS 142
LSGTKVQDGS
Sbjct: 3 LSGTKVQDGS 32
>AV779952
Length = 557
Score = 244 bits (623), Expect(2) = 7e-66
Identities = 120/170 (70%), Positives = 139/170 (81%)
Frame = +2
Query: 356 LEFGLSLGGDSKAEREACKIVKVEPFNSEKKRMGVVVEQPDGSVRAHCKGASEIILAACD 415
L GLSLGGD R+ K+VKVEPFNS KK MGVV++ PDG RAHCKGASEI+LAACD
Sbjct: 47 LRIGLSLGGDFIKGRQVVKLVKVEPFNSTKKSMGVVLQLPDGGFRAHCKGASEIVLAACD 226
Query: 416 KVIDLNGDVVALDGESTNYLNSIINQFANEALRTLCLAYMELENGFAAEDPIPASGYTCI 475
KV+D NG+VV LD +S N + I +FA++ALRTLCL YM++++ F PIP SGYTCI
Sbjct: 227 KVVDSNGEVVPLDEDSINQVKDTIEKFADDALRTLCLTYMDIQDEF*VGSPIPTSGYTCI 406
Query: 476 GIVGIKDPVRPGVKQSVAECRSAGIVVRMVTGDNINTAKAIARECGILTD 525
GIVGIKDPVRPGV++SVA CRSAGI VRMVTGDNI+TAKAIARECGILTD
Sbjct: 407 GIVGIKDPVRPGVRESVAICRSAGITVRMVTGDNIDTAKAIARECGILTD 556
Score = 24.6 bits (52), Expect(2) = 7e-66
Identities = 11/16 (68%), Positives = 12/16 (74%)
Frame = +3
Query: 347 LGTPTETAILEFGLSL 362
LG+PTETAILE L
Sbjct: 21 LGSPTETAILELACHL 68
>TC17656 similar to GB|BAA97361.1|8843813|AB023042 Ca2+-transporting
ATPase-like protein {Arabidopsis thaliana;} , partial
(25%)
Length = 821
Score = 213 bits (543), Expect = 8e-56
Identities = 105/180 (58%), Positives = 134/180 (74%), Gaps = 3/180 (1%)
Frame = +2
Query: 627 RWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALAL 686
RWGRSVY NIQKF+QFQLTVNV AL++N +A +G PL AVQLLWVN+IMDTLGALAL
Sbjct: 281 RWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALAL 460
Query: 687 ATEPPTDDLMKREPVGRKGDFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFL---RGP 743
ATEPPTD LM R PVGR+ I N+MWRN+L QA+YQ V+ L G+ + L +
Sbjct: 461 ATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLTHDKFD 640
Query: 744 NADIVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFVAVISATVVFQIIIVEY 803
+A V NTLIFN FV CQ+FNE N+R+ +E ++FKG+ N++F+ ++ TVV QI+IVE+
Sbjct: 641 HAVKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTKNYLFMGIVGLTVVLQIVIVEF 820
Score = 118 bits (295), Expect = 4e-27
Identities = 66/108 (61%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = +3
Query: 535 FREKTQEELFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADI 594
FR + E E+ I VM RSSP DK LV+ LR G VVAVTGDGTNDAPALHEADI
Sbjct: 9 FRAMSDAERDEIADAISVMGRSSPNDKLLLVQALRRK-GHVVAVTGDGTNDAPALHEADI 185
Query: 595 GLAMGIAGTEVAKESADVIILDDNFSTIVTVARWG---RSVYINIQKF 639
GLAMGIAGTEVAKES+D+IILDDNF+++V V+ G ++ N+ F
Sbjct: 186 GLAMGIAGTEVAKESSDIIILDDNFASVVKVSDGGGLYMQIFRNLSSF 329
>BF177756
Length = 455
Score = 210 bits (534), Expect = 9e-55
Identities = 102/151 (67%), Positives = 126/151 (82%)
Frame = +1
Query: 641 QFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKREP 700
QFQLTVNVVAL++NF SAC+TGSAPLTAVQLLWVN+IMDTLGALALATEPP D L+KR P
Sbjct: 1 QFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPP 180
Query: 701 VGRKGDFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNADIVLNTLIFNTFVFC 760
V R FI MWRNI+GQ++YQ +V+ L GK + L G +A VLNTLIFN+FVFC
Sbjct: 181 VARGASFITKAMWRNIIGQSIYQLIVLVILTFDGKRLLRLSGSDATRVLNTLIFNSFVFC 360
Query: 761 QVFNEINSREMEEIDVFKGIWDNHVFVAVIS 791
QVFNEINSR++E+I++F+G++D+ +FVA+IS
Sbjct: 361 QVFNEINSRDIEKINIFRGMFDSWIFVAIIS 453
>AV409404
Length = 421
Score = 165 bits (417), Expect = 3e-41
Identities = 85/139 (61%), Positives = 103/139 (73%), Gaps = 4/139 (2%)
Frame = +1
Query: 249 LSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVS 308
LSLAFAMKK+MND+ALVRHL+ACETMGSA IC+DKTGTLTTN M V K IC + E+
Sbjct: 4 LSLAFAMKKLMNDRALVRHLSACETMGSANCICTDKTGTLTTNHMVVDKIWICEKTTEIK 183
Query: 309 NSSS----SSDIPDSAAKLLLQSIFNNTGGEVVYNKKGKREILGTPTETAILEFGLSLGG 364
+ S S+I + + LQ+IF NT EVV +K+GK+ ILGTPTE+A+LEFGL GG
Sbjct: 184 GNESVEKLKSEISEEVISIFLQAIFQNTSSEVVNDKEGKKAILGTPTESALLEFGLLSGG 363
Query: 365 DSKAEREACKIVKVEPFNS 383
D A+R KI+KVEPFNS
Sbjct: 364 DFDAQRRDYKILKVEPFNS 420
>AV417225
Length = 359
Score = 147 bits (372), Expect = 5e-36
Identities = 72/119 (60%), Positives = 91/119 (75%)
Frame = +3
Query: 682 GALALATEPPTDDLMKREPVGRKGDFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLR 741
GALALATEPP D LM+R PVGR+ FI MWRNI GQ++YQ +V+ L GK + L
Sbjct: 3 GALALATEPPNDGLMERLPVGRRASFITKPMWRNIFGQSIYQLIVLGVLNFDGKRLLGLT 182
Query: 742 GPNADIVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFVAVISATVVFQIII 800
G +A VLNT+IFNTFVFCQVFNEINSRE+E+I++F+G++D+ +F VI +TV FQ II
Sbjct: 183 GSDATAVLNTVIFNTFVFCQVFNEINSREIEKINIFRGMFDSGIFFTVIFSTVAFQAII 359
>TC17282 similar to UP|Q8L8A0 (Q8L8A0) Type IIB calcium ATPase MCA5, partial
(7%)
Length = 498
Score = 112 bits (281), Expect = 2e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +1
Query: 768 SREMEEIDVFKGIWDNHVFVAVISATVVFQIIIVEYLGTFANTTPLSLVQWIFCLGVGYM 827
SREME+I+V GI +N+VFVAV+SAT +FQIIIVEY+GTFANTTPL+LVQW FCL VG++
Sbjct: 1 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 180
Query: 828 GMPIAVRLKQIPV 840
GMPIA +K IPV
Sbjct: 181 GMPIAAGIKMIPV 219
>TC11343 similar to PIR|B96660|B96660 protein F2K11.18 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(21%)
Length = 909
Score = 95.9 bits (237), Expect = 2e-20
Identities = 59/177 (33%), Positives = 95/177 (53%)
Frame = +2
Query: 475 IGIVGIKDPVRPGVKQSVAECRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPD 534
IG++ + DP++P ++ V+ S I MVTGDN TA +IAR+ GI T
Sbjct: 164 IGVLAVSDPLKPNAREVVSILNSMNIRSIMVTGDNWGTANSIARQAGIET---------- 313
Query: 535 FREKTQEELFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADI 594
V+A + P K T VK+L+T+ G VA+ GDG ND+PAL AD+
Sbjct: 314 -----------------VIAEAQPQTKATKVKELQTS-GYTVAMVGDGINDSPALVAADV 439
Query: 595 GLAMGIAGTEVAKESADVIILDDNFSTIVTVARWGRSVYINIQKFVQFQLTVNVVAL 651
G+A+G AGT++A E++D++++ N I+ + + I+ + L N++A+
Sbjct: 440 GIAIG-AGTDIAIEASDIVLMRSNLEDIIIALDLAKKTFSRIRLNYLWALGYNLLAI 607
>AV780873
Length = 487
Score = 79.0 bits (193), Expect = 3e-15
Identities = 39/75 (52%), Positives = 56/75 (74%)
Frame = +3
Query: 1 MTLMILGVCAFVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDK 60
+TL+IL V A SL +G+ +EG +G +DG I ++LLV+FVTA SDY+QSLQF+DL++
Sbjct: 255 LTLIILMVAAAASLALGIKSEGIEEGWYDGGSIAFAVLLVIFVTAVSDYKQSLQFRDLNE 434
Query: 61 EKKKISIQVTRNGYR 75
EK+ I ++V R G R
Sbjct: 435 EKRNIHLEVIRGGRR 479
>TC14980 similar to UP|ACA9_ARATH (Q9LU41) Potential calcium-transporting
ATPase 9, plasma membrane-type (Ca(2+)-ATPase isoform
9) , partial (8%)
Length = 594
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/77 (40%), Positives = 51/77 (65%)
Frame = +1
Query: 764 NEINSREMEEIDVFKGIWDNHVFVAVISATVVFQIIIVEYLGTFANTTPLSLVQWIFCLG 823
NE N+R+ EE++VF+G+ N +F+ ++ T + QIII+E+LG F +T L+ W+ L
Sbjct: 1 NEFNARKPEEMNVFRGVTKNRLFMGIVVMTFILQIIIIEFLGKFTDTVRLNWTLWLASLL 180
Query: 824 VGYMGMPIAVRLKQIPV 840
+G + P+A+ K IPV
Sbjct: 181 IGLISWPLAIAGKFIPV 231
>TC19919 homologue to UP|Q7Y068 (Q7Y068) Plasma membrane H+-ATPase, partial
(21%)
Length = 586
Score = 58.2 bits (139), Expect = 5e-09
Identities = 56/236 (23%), Positives = 93/236 (38%)
Frame = +1
Query: 270 ACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVSNSSSSSDIPDSAAKLLLQSIF 329
A E M +CSDKTGTLT N+++V + I + +K +
Sbjct: 1 AIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFTKGIEKEHV----------------- 129
Query: 330 NNTGGEVVYNKKGKREILGTPTETAILEFGLSLGGDSKAEREACKIVKVEPFNSEKKRMG 389
++ + R T + AI + + D K R + V PFN KR
Sbjct: 130 ------ILLAARASR----TENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTA 279
Query: 390 VVVEQPDGSVRAHCKGASEIILAACDKVIDLNGDVVALDGESTNYLNSIINQFANEALRT 449
+ DGS KGA E IL C+ D+ +S I++FA LR+
Sbjct: 280 LTYIDSDGSWHRASKGAPEQILNLCNCKEDVR-----------KRAHSTIDKFAERGLRS 426
Query: 450 LCLAYMELENGFAAEDPIPASGYTCIGIVGIKDPVRPGVKQSVAECRSAGIVVRMV 505
L +A + P + + +G++ + DP R +++ + G+ V+M+
Sbjct: 427 LGVARQVVPE---KSKDAPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMI 585
>TC10275 similar to UP|Q7Y051 (Q7Y051) Paa2 P-type ATPase, partial (16%)
Length = 724
Score = 54.7 bits (130), Expect = 6e-08
Identities = 32/101 (31%), Positives = 53/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 552 VMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAM-GIAGTEVAKESA 610
V A +P K + L+ G VA+ GDG NDAPAL AD+G+A+ A A ++A
Sbjct: 7 VKASLAPQQKSEFISSLKAA-GHHVAMVGDGINDAPALAVADVGIALQNEAQENAASDAA 183
Query: 611 DVIILDDNFSTIVTVARWGRSVYINIQKFVQFQLTVNVVAL 651
+I+L + S +V +S + + + + + NV+A+
Sbjct: 184 SIILLGNKISQVVDAIDLAQSTMAKVYQNLSWAVAYNVIAI 306
>AU088926
Length = 487
Score = 44.7 bits (104), Expect = 6e-05
Identities = 35/126 (27%), Positives = 56/126 (43%), Gaps = 4/126 (3%)
Frame = +2
Query: 475 IGIVGIKDPVRPGVKQSVAECRSAGIVVRMVTGDNINTAKAIARECGILTD----DGIAI 530
+G++ + DP R ++ G+ V+M+TGD + K R G+ T+ +
Sbjct: 20 LGLLPLFDPPRHDSAXTIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMXPSSSLLG 199
Query: 531 EGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALH 590
+ D + ELI K A P K +V +L T + +TG G NDAPAL
Sbjct: 200 QSKD-AAIASIPIDELIEKADGFAGVFPEHKXEIVXRLXDT-KHICGMTGXGVNDAPALX 373
Query: 591 EADIGL 596
+ + L
Sbjct: 374 KXTLVL 391
>AV409298
Length = 332
Score = 41.6 bits (96), Expect = 5e-04
Identities = 31/103 (30%), Positives = 50/103 (48%)
Frame = +3
Query: 95 DQVPADGLFVSGFSVLIDESSLTGESEPIMVTTQNPFLLSGTKVQDGSCTMLVTTVGMRT 154
D++PADG+ +G S +DESS TGE P+ + +G+ +G+ T+ V G T
Sbjct: 3 DRIPADGIVRAGRST-VDESSFTGEPLPV-TKVAGCEVAAGSINLNGTLTLEVRRPGGET 176
Query: 155 QWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLVFAVITFT 197
++ + E E P+Q + VA + +V TFT
Sbjct: 177 AMADIVRLVEEAQSREAPVQRLADKVAGYFTYGVMAVSVTTFT 305
>TC18638 similar to UP|Q8W0V0 (Q8W0V0) Type IIB calcium ATPase, partial (6%)
Length = 464
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/45 (48%), Positives = 28/45 (61%)
Frame = +3
Query: 796 FQIIIVEYLGTFANTTPLSLVQWIFCLGVGYMGMPIAVRLKQIPV 840
FQ IIV++LGTFAN PL+ + + G + MPI LK IPV
Sbjct: 18 FQPIIVKFLGTFANPVPLNWQLRLLSVLFGAVSMPIFAILKCIPV 152
>TC18250 similar to UP|Q8L741 (Q8L741) AT3g13690/MMM17_12, partial (3%)
Length = 757
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 123 IMVTTQNPFLLSGTKVQDGSCTMLVTTVG 151
I+ T+QN F L GTKVQDGS TMLV +G
Sbjct: 313 ILQTSQN*FFLPGTKVQDGSSTMLVILIG 399
>BP042017
Length = 470
Score = 34.7 bits (78), Expect = 0.064
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 82 NLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGES 120
+++PGDIV GD P D +S +++ ++SLTGES
Sbjct: 117 DVVPGDIVIFEPGDLFPGDIRLLSSTHLVVSQASLTGES 233
>AU240120
Length = 300
Score = 33.5 bits (75), Expect = 0.14
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 280 ICSDKTGTLTTNRMTVVKTCI 300
+CSDKTGTLT N++TV K+ I
Sbjct: 12 LCSDKTGTLTLNKLTVDKSLI 74
>TC19888 weakly similar to PIR|T08551|T08551 Ca2+-transporting ATPase
homolog F27B13.140 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (3%)
Length = 464
Score = 31.6 bits (70), Expect = 0.54
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 813 LSLVQWIFCLGVGYMGMPIAVRLKQIPV 840
L+ QW+ C+ +G++G P+AV K IPV
Sbjct: 1 LNWKQWLICVIIGFIGWPLAVVGKFIPV 84
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,446,079
Number of Sequences: 28460
Number of extensions: 150366
Number of successful extensions: 747
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of query: 840
length of database: 4,897,600
effective HSP length: 98
effective length of query: 742
effective length of database: 2,108,520
effective search space: 1564521840
effective search space used: 1564521840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC147000.2