BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.1 - phase: 0
(504 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 171 2e-43
TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partia... 152 2e-37
AV415062 117 6e-27
TC19775 similar to GB|AAF75234.1|8453100|AF233752 short-root pro... 108 3e-24
TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional ... 99 2e-21
CN825078 94 4e-20
TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imp... 83 9e-17
TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r... 75 2e-14
AV768195 70 1e-12
TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible gibberell... 58 4e-09
TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial... 57 5e-09
TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial ... 55 2e-08
AV415616 54 6e-08
AV770800 54 8e-08
AV414168 53 1e-07
TC16184 53 1e-07
TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible gibberell... 53 1e-07
AV418844 51 5e-07
BP077395 49 2e-06
AV419737 45 2e-05
>TC14740 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (57%)
Length = 1406
Score = 171 bits (434), Expect = 2e-43
Identities = 109/349 (31%), Positives = 173/349 (49%), Gaps = 9/349 (2%)
Frame = +1
Query: 164 GDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQ----EVSPW 219
GD Q+L +Y L+ L +R+ +G YK L T K L+ + ++ P+
Sbjct: 22 GDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQP-------TGKELMSYMHILYQICPY 180
Query: 220 TTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTA 279
F +++AN AI EA+ ++HIID TQW L++ALA R P +R+T V +
Sbjct: 181 WKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDS 360
Query: 280 ISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNS 339
S + ++ +G R+ FAR GVPF+F E+ +L ++ EALA+N
Sbjct: 361 QSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCEVERENLGVRPGEALAVNFPYV 540
Query: 340 LHSIS----GAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRV 395
LH + NHRD + L++ L P+V+T+ E+E++ S F F E L ++
Sbjct: 541 LHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNT---SPFFNRFMETLEYYTA 711
Query: 396 YFEALDESFSRTSSERLMLERE-AGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNT 454
FE++D + R +R+ E+ R IV++VAC+ E VER E +W+ R GF
Sbjct: 712 MFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKQ 891
Query: 455 VSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
S V + LLR + + + DG + L W + +V +S WR
Sbjct: 892 WPLSSSVMTATQNLLRDFNHNYRLEQRDG--ALCLGWMKRALVTSSAWR 1032
>TC14825 similar to UP|Q8S4W7 (Q8S4W7) GAI-like protein 1, partial (47%)
Length = 1392
Score = 152 bits (383), Expect = 2e-37
Identities = 85/292 (29%), Positives = 152/292 (51%), Gaps = 3/292 (1%)
Frame = +2
Query: 215 EVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLT 274
E P+ F H AN AILEA +G ++H+ID + QWP L++ALA R P RLT
Sbjct: 2 ETCPYLKFAHFTANQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLT 181
Query: 275 TVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-IIFSDLRELNLCDLDIK--EDEA 331
+ S ++++G ++ + A + V F+++ + + L +L+ LD++ E+E+
Sbjct: 182 GIGPPAPDNSDH--LQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLDLRPPEEES 355
Query: 332 LAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLR 391
+A+N V LH + + S++R ++P +LT+VE+EA G+ F++ F E L
Sbjct: 356 VAVNSVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEAGHN---GASFLDRFTESLH 526
Query: 392 WFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESVERRETAARWRRRLHGGG 451
++ F++L+ S + S ++ M E G+ I ++VAC+ + +ER ET +WR R + G
Sbjct: 527 YYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAG 706
Query: 452 FNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
+ V LL + G + + + L W +P++ S W+
Sbjct: 707 LSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQ 862
>AV415062
Length = 237
Score = 117 bits (292), Expect = 6e-27
Identities = 60/79 (75%), Positives = 69/79 (86%), Gaps = 2/79 (2%)
Frame = +3
Query: 268 TPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIF--SDLRELNLCDLD 325
TPHLRLT+VV +GGSVQ+VMKEIG+RMEKFARLMGVPFKF ++ DL ELNL DLD
Sbjct: 3 TPHLRLTSVVA--TGGSVQRVMKEIGARMEKFARLMGVPFKFNVVHHAGDLSELNLSDLD 176
Query: 326 IKEDEALAINCVNSLHSIS 344
IK+DEALAINCVNSLHS++
Sbjct: 177 IKDDEALAINCVNSLHSVT 233
>TC19775 similar to GB|AAF75234.1|8453100|AF233752 short-root protein
{Arabidopsis thaliana;} , partial (7%)
Length = 581
Score = 108 bits (269), Expect = 3e-24
Identities = 48/67 (71%), Positives = 55/67 (81%)
Frame = +2
Query: 438 ETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVV 497
ETAA+W RR+HG G NT +FS+EVCDDVRALLRRYKEGWSMT D GI L+WK++ VV
Sbjct: 5 ETAAKWTRRMHGAGMNTAAFSEEVCDDVRALLRRYKEGWSMTQC-SDGGILLTWKEQAVV 181
Query: 498 WASVWRP 504
WAS WRP
Sbjct: 182 WASAWRP 202
>TC14844 similar to UP|Q8L553 (Q8L553) SCARECROW transcriptional
regulator-like, partial (49%)
Length = 1051
Score = 99.0 bits (245), Expect = 2e-21
Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 4/251 (1%)
Frame = +3
Query: 257 LLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDL 316
LL L+ R P +T V A++ + +K +G + + A + + F+FK++ L
Sbjct: 3 LLHELSARLAGKP---VTVKVIAVAEDGADERLKTVGDMLGQQAERLRIGFEFKVVSCKL 173
Query: 317 RELNLCDLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLTIVEEEA 372
EL L + DE LA+N L + N RD + ++ L PRV+T+VE+E
Sbjct: 174 AELTREALGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKALSPRVVTLVEQEL 353
Query: 373 DLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYE 432
+ + FV E ++ F++++ + +R S ER+ +E+ R + + VAC+ +
Sbjct: 354 NTNT---APFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRD 524
Query: 433 SVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWK 492
VER E +WR R+ GF V + + A L +T + + GI W
Sbjct: 525 RVERCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAENR---VTVKEENGGICCGWV 695
Query: 493 DKPVVWASVWR 503
+ + AS WR
Sbjct: 696 GRTLTVASAWR 728
>CN825078
Length = 650
Score = 94.4 bits (233), Expect = 4e-20
Identities = 59/199 (29%), Positives = 98/199 (48%)
Frame = +3
Query: 143 DNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCS 202
++N QL+ + G+ Q+L +Y ++ L +R +G+ Y L +
Sbjct: 12 EDNMRDFDQLIEKARSAVSINGEPIQRLGAYMVEGLVARKEASGNSIYHALNCREPEGEE 191
Query: 203 FDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALA 262
S ++L E+ P+ FG++AANGAI EA ++HIID +QW TLL+ALA
Sbjct: 192 LLSYMQLLF---EICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALA 362
Query: 263 TRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLC 322
R PH+R+T + +S + + +G R+ + G+P +F + ++
Sbjct: 363 ARPGGAPHVRITGIDDPVSKYARGDGLDIVGKRLALMSEKFGIPVEFHGVPVFGPDVTRD 542
Query: 323 DLDIKEDEALAINCVNSLH 341
LDI+ EALA+N LH
Sbjct: 543 MLDIRPGEALAVNFPLQLH 599
>TC16366 similar to PIR|E96542|E96542 scarecrow-like protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(27%)
Length = 711
Score = 83.2 bits (204), Expect = 9e-17
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Frame = +3
Query: 360 LEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA- 418
L P+V+T+VE+E + + F++ F E + +++ FE++D R ER+ +E+
Sbjct: 12 LSPKVVTLVEQEFNTN---NAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCL 182
Query: 419 GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSM 478
R +V+LVAC+ E VER E +WR R GF + + ++ LL Y+ +++
Sbjct: 183 AREVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGHYTL 362
Query: 479 TSSDGDTGIFLSWKDKPVVWASVWR 503
DG +FL W ++ +V + WR
Sbjct: 363 EERDG--ALFLGWMNQVLVASCAWR 431
>TC11080 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
modulator, partial (33%)
Length = 556
Score = 75.5 bits (184), Expect = 2e-14
Identities = 53/172 (30%), Positives = 87/172 (49%), Gaps = 2/172 (1%)
Frame = +2
Query: 168 QKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKML-LKFQEVSPWTTFGHVA 226
+K++SYF QAL R+ T + S +L + F E P+ F H
Sbjct: 83 RKVASYFAQALARRIYGIFPDTVDS------------SLHDVLHMHFYESCPYLKFAHFT 226
Query: 227 ANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQ 286
AN AILEA ++H++D QWP L++ALA R P RLT + S
Sbjct: 227 ANQAILEAFATAGRVHVVDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNS-- 400
Query: 287 KVMKEIGSRMEKFARLMGVPFKFK-IIFSDLRELNLCDLDIKEDEALAINCV 337
++++G ++ + A+ +GV F+F+ + + L +L+ L+I+ EA+A+N V
Sbjct: 401 DALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSV 556
>AV768195
Length = 334
Score = 69.7 bits (169), Expect = 1e-12
Identities = 29/52 (55%), Positives = 41/52 (78%), Gaps = 4/52 (7%)
Frame = -3
Query: 457 FSDEVCDDVRALLRRYKEGWSMTSSDGD----TGIFLSWKDKPVVWASVWRP 504
FSD+V DDV+ALL+RY+ GWS+ G+ +GI+L+WK++PVVWAS W+P
Sbjct: 329 FSDDVVDDVKALLKRYQAGWSLVVPQGNDHNLSGIYLTWKEEPVVWASAWKP 174
>TC16678 similar to UP|Q8GVE2 (Q8GVE2) Chitin-inducible
gibberellin-responsive protein, partial (14%)
Length = 740
Score = 57.8 bits (138), Expect = 4e-09
Identities = 28/81 (34%), Positives = 45/81 (54%)
Frame = +3
Query: 422 IVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSS 481
+V+++AC+ E VER E +W+ RL GF S V ++ LLR Y E +++
Sbjct: 6 VVNVIACEGKERVERHELFGKWKSRLTMAGFRQSPLSSYVNSVIKNLLRCYSEHYTLIEK 185
Query: 482 DGDTGIFLSWKDKPVVWASVW 502
DG + L WK++ ++ AS W
Sbjct: 186 DG--AMLLGWKNRSLISASAW 242
>TC18636 similar to UP|Q8W584 (Q8W584) AT4g17230/dl4650c, partial (10%)
Length = 813
Score = 57.4 bits (137), Expect = 5e-09
Identities = 28/84 (33%), Positives = 43/84 (50%)
Frame = +1
Query: 420 RGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMT 479
R IV+++AC+ E VE E +WR R GF S V VR +L + E + +
Sbjct: 40 RDIVNMIACEGXERVEXHELFGKWRSRFSMXGFVPCPLSSSVTASVRNILNEFNENYRLE 219
Query: 480 SSDGDTGIFLSWKDKPVVWASVWR 503
D ++L+WK++ + AS WR
Sbjct: 220 HK--DVALYLTWKNRAMCTASAWR 285
>TC14505 similar to UP|Q7Y1B6 (Q7Y1B6) GAI-like protein, partial (16%)
Length = 670
Score = 55.5 bits (132), Expect = 2e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = +1
Query: 412 LMLEREAGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRR 471
+M E G I ++VAC+ + VER ET +WR R+ GFN V LL
Sbjct: 46 VMTEVYLGEQICNVVACEGVDRVERHETLVQWRTRMGSAGFNPVHLGSNAFKQASMLLAL 225
Query: 472 YKEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
+ G + + + L W +P++ S W+
Sbjct: 226 FAGGDGYRVEENNGCLMLGWHTRPLIATSAWK 321
>AV415616
Length = 316
Score = 53.9 bits (128), Expect = 6e-08
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Frame = +2
Query: 298 KFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSI----------SGAG 347
K A+ VPF+F I + E+ L DL+I+ +EA+A+N LH + +
Sbjct: 2 KIAKSCNVPFEFHAIGTSPSEVQLQDLEIRPEEAIAVNFAMMLHHVPDESVDTQNQGWSQ 181
Query: 348 NHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWF 393
NHR+ + L + L P+V+T+VE+E++ F+ F E + ++
Sbjct: 182 NHRNRLLRLAKCLSPKVVTLVEQESNTN---NLPFLPRFVETMNYY 310
>AV770800
Length = 514
Score = 53.5 bits (127), Expect = 8e-08
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = -1
Query: 383 VEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESVERRETAAR 442
+E F E L ++ F++L+ ++ + E R I ++V C+ VER E A+
Sbjct: 493 LERFTEALHYYSTVFDSLEGC--PVEPDKALAEMYLQREICNVVCCEGTARVERHEPLAK 320
Query: 443 WRRRLHGGGFNTVSFSDEVCDDVRALLRRY-KEGWSMTSSDGDTGIFLSWKDKPVVWASV 501
WR RL GF V + L + EG+ + +G + L W +P + AS
Sbjct: 319 WRERLGKAGFRPVHLGSDAFTQASMLFTLFSSEGYCVEEKEG--CLTLGWHSRPPLAASA 146
Query: 502 WR 503
W+
Sbjct: 145 WQ 140
>AV414168
Length = 208
Score = 52.8 bits (125), Expect = 1e-07
Identities = 25/55 (45%), Positives = 38/55 (68%)
Frame = +1
Query: 222 FGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTV 276
FG+++ANGAI EA++ ++HIID + TQW +L++ALA R P +R+T V
Sbjct: 7 FGYMSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPKVRITGV 171
>TC16184
Length = 702
Score = 52.8 bits (125), Expect = 1e-07
Identities = 30/109 (27%), Positives = 55/109 (49%), Gaps = 1/109 (0%)
Frame = +1
Query: 397 FEALDESFSRTSSERLMLEREA-GRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTV 455
F+ D SR + R ++ERE+ GR ++++AC+ E VER ET RW+ R GF +
Sbjct: 7 FDMFDXVISRDNQWRRLIERESVGREAMNVIACEGLERVERPETYKRWQVRNTRAGFKQL 186
Query: 456 SFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASVWRP 504
++ + D R L+++ + + + WK + + ++ W P
Sbjct: 187 PLNEGLMDKFRTKLKKWYHK-DFVFDEDNNWMLQGWKGRIMYASTCWVP 330
>TC10172 similar to UP|Q8GVE1 (Q8GVE1) Chitin-inducible
gibberellin-responsive protein (OJ1127_E01.12 protein),
partial (4%)
Length = 691
Score = 52.8 bits (125), Expect = 1e-07
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +2
Query: 422 IVDLVACDPYESVERRETAARWRRRL-HGGGFNTVSFSDEVCDDVRALLRRYK-EGWSMT 479
I +++AC+ E ER E+ A+WR+ + GGF + ++ R LL+ Y E +S+
Sbjct: 2 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 181
Query: 480 SS--DGDTGIFLSWKDKPVVWASVWRP 504
DG G+ L W D+P+ S W P
Sbjct: 182 KQEEDGGEGLTLGWLDQPLYTVSAWTP 262
>AV418844
Length = 284
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/84 (30%), Positives = 43/84 (50%)
Frame = +1
Query: 241 LHIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFA 300
+HIID Y QWP L+++L+ R P LR+T + G + ++E G R+E +
Sbjct: 16 VHIIDFGICYGFQWPCLIKSLSERHGGPPRLRVTGIELPRPGFRPAERVEETGRRLENYC 195
Query: 301 RLMGVPFKFKIIFSDLRELNLCDL 324
+ VPF++ + + L DL
Sbjct: 196 KKFKVPFEYNCLAKKWETIKLEDL 267
>BP077395
Length = 397
Score = 48.9 bits (115), Expect = 2e-06
Identities = 23/72 (31%), Positives = 38/72 (51%)
Frame = -3
Query: 432 ESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSW 491
+ +ER E A +WR R+ GF S V D++R L++ Y + + + G + W
Sbjct: 386 DRIERYEVAGKWRARMTMAGFTPSPMSANVGDEIRKLIKLYCDRYKIKEEMG--ALHFGW 213
Query: 492 KDKPVVWASVWR 503
+DK ++ AS WR
Sbjct: 212 EDKNLIVASAWR 177
>AV419737
Length = 410
Score = 45.4 bits (106), Expect = 2e-05
Identities = 34/121 (28%), Positives = 53/121 (43%)
Frame = +3
Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
L +TA N Q ++ LN +P G + + Y +AL S ++ G + L
Sbjct: 66 LYKTAELIEAGNPVHAQGILARLNHQLSPNGKPFHRAAFYMKEALQSMLHSNG---HNFL 236
Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
T + SF F E+SP F + N A++EA+E ++HIID + Q
Sbjct: 237 TFSP---ISFIFKIGAYKSFSEISPVLQFANFTCNQALIEAVERFDRIHIIDFDIGFGVQ 407
Query: 254 W 254
W
Sbjct: 408 W 410
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,520,918
Number of Sequences: 28460
Number of extensions: 140437
Number of successful extensions: 1141
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of query: 504
length of database: 4,897,600
effective HSP length: 94
effective length of query: 410
effective length of database: 2,222,360
effective search space: 911167600
effective search space used: 911167600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC147000.1