BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146941.15 - phase: 0
(688 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV425218 166 9e-42
BP038017 161 3e-40
CN825057 134 4e-32
CB827002 127 6e-30
AV765466 113 9e-26
TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transp... 101 5e-22
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 79 2e-15
AV780484 62 4e-10
AV409041 46 2e-05
AV423237 40 0.001
AV776853 37 0.010
TC12220 37 0.014
TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired re... 37 0.014
BP066608 31 0.75
TC10668 30 0.98
AV407687 30 1.3
TC14002 similar to UP|Q9ST13 (Q9ST13) S-locus protein 8 (Fragmen... 29 2.8
BP066350 29 2.8
AU089246 28 3.7
TC16450 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partia... 28 6.3
>AV425218
Length = 419
Score = 166 bits (421), Expect = 9e-42
Identities = 75/138 (54%), Positives = 97/138 (69%)
Frame = +2
Query: 259 PFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGKAPVGIVTDQCKAVQNA 318
P AT VGVNHHGQS L GC LLS ED+ESFVWLF+S L CM G P GI+TD +A++ A
Sbjct: 5 PLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKA 184
Query: 319 IELVFPTTRHRWCLWHIMKKIPEKLNEYSEYKRIKSAMEGAVYDTHTTTGFEEKWCSFID 378
IE V P+TRHRWCL +IMKK+P+KL Y++Y+ I+ ++ VYD FE W ++
Sbjct: 185 IETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVE 364
Query: 379 KFMLQQNDWLSGLYEERH 396
F L+ N+WL+ L+ ERH
Sbjct: 365 DFGLEDNEWLNELFLERH 418
>BP038017
Length = 570
Score = 161 bits (408), Expect = 3e-40
Identities = 74/145 (51%), Positives = 99/145 (68%)
Frame = +2
Query: 183 NNEQHLIGKEGDGKALMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFG 242
++++ +G+ D + L++YF KM+ +N F+Y I LDD+ + NVFWADARSR+ Y YFG
Sbjct: 140 SSQKRTLGR--DAQNLLNYFKKMQGKNPGFYYAIQLDDENRMINVFWADARSRSAYNYFG 313
Query: 243 DVVTFDTTYLTNKFDMPFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWLRCMLGK 302
D V FDT Y N++ +PFA F GVNHHGQ+ L GC LL E SF WLF++WL M +
Sbjct: 314 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQNVLFGCALLLDESESSFTWLFRTWLSAMNDR 493
Query: 303 APVGIVTDQCKAVQNAIELVFPTTR 327
PV I TDQ +A+Q A+ VFP TR
Sbjct: 494 PPVSITTDQDRAIQAAVAQVFPETR 568
>CN825057
Length = 721
Score = 134 bits (338), Expect = 4e-32
Identities = 76/238 (31%), Positives = 121/238 (49%), Gaps = 9/238 (3%)
Frame = +1
Query: 46 TLYREYALKKGFRWKTRTSKK-RDDGETCYAILVCTREGSQGSEIPCTLKTPPSKTKNCP 104
+ Y+EYA GF + S++ + E A C+R G + + K +C
Sbjct: 7 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDGGSNRRSSVKKTDCK 186
Query: 105 AKICIKLEKDGLWYISKFESRHSHKTSPTKRMDLHVKRTIEINEDAGV--------RTIK 156
A + +K + DG W I +F H+H+ P + R +++ E + RT K
Sbjct: 187 ACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNMDILHAVSERTRK 366
Query: 157 TFRSIVNNAEGHENIPFCEKDMINYVNNEQHLIGKEGDGKALMSYFSKMREQNSNFFYDI 216
+ + + G NI D+ + Q+L EGD + ++ YF ++++N NFFY I
Sbjct: 367 MYVEMSRQSGGCLNIESLVGDLNDQFKKGQYLAMDEGDAQVMLEYFKHIQKENPNFFYSI 546
Query: 217 DLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYLTNKFDMPFATFVGVNHHGQSTL 274
DL+++ +RN+FW DA+S Y F DVV+FDT+Y+ + +PFA FVGVNHH Q L
Sbjct: 547 DLNEEQRLRNIFWIDAKSINDYLSFNDVVSFDTSYIKSNEKLPFAPFVGVNHHCQPIL 720
>CB827002
Length = 534
Score = 127 bits (319), Expect = 6e-30
Identities = 72/175 (41%), Positives = 101/175 (57%)
Frame = +1
Query: 383 QQNDWLSGLYEERHRWAPTFVRKYFWAGMSTTQRSESMHAFFDGYINSTTSLNQFVKQYD 442
Q ++WLS LY + AP +R F+A MS TQRS+SM+++FDGY+N++T+LNQF K Y+
Sbjct: 28 QDHEWLS-LYSSCRQGAPVHLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLNQFFKLYE 204
Query: 443 NALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEYTHAKFKEVQAEFISKMNCAPSL 502
AL SR EKE AD+++++T + S +EKQ YT F Q E + + S
Sbjct: 205 KALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASK 384
Query: 503 NVVEGCFATYHVLEEVVVGGRHKENVFKVVFNQENQDFSCECSLFEFRGILCCHV 557
+G TYHV + G HK + V FN SC C +FEF G+LC H+
Sbjct: 385 ADDDGEVITYHVAK---FGEDHK--AYYVKFNVLEMKASCSCQMFEFSGLLCRHI 534
>AV765466
Length = 599
Score = 113 bits (283), Expect = 9e-26
Identities = 49/92 (53%), Positives = 70/92 (75%)
Frame = -2
Query: 542 CECSLFEFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKNIKRKHSYIKSSYCARELKPK 601
C+C LFEFRGILC H L++ ++ERVK VP++YVL RW+KN++RK+ Y+K+SYC + LKP+
Sbjct: 592 CDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRKNMRRKYVYVKTSYCVQHLKPQ 413
Query: 602 MDRFDKLCKHFYEIAEVAAESEDATKALHETL 633
M+R + LC F IA AAE E+ + ++ TL
Sbjct: 412 MERLELLCNQFKSIAVSAAEFEETSSFVNVTL 317
>TC12114 weakly similar to GB|BAC16510.1|23237937|AP005198 transposase-like
{Oryza sativa (japonica cultivar-group);}, partial (8%)
Length = 488
Score = 101 bits (251), Expect = 5e-22
Identities = 45/104 (43%), Positives = 65/104 (62%)
Frame = +1
Query: 193 GDGKALMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYL 252
G+ ++ YF + +NS F++ LDD+ + NVFW DAR Y YFGD+V+ D+TY
Sbjct: 40 GEAGYILQYFQRKLVENSPFYHAYQLDDEDQITNVFWVDARMLIDYGYFGDMVSLDSTYC 219
Query: 253 TNKFDMPFATFVGVNHHGQSTLLGCGLLSGEDTESFVWLFKSWL 296
T+ + P A F G NHH ++ + G LL E TES+ WLF+S+L
Sbjct: 220 THSSNRPLAVFSGFNHHRKAVIFGAALLYDETTESY*WLFESFL 351
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 79.0 bits (193), Expect = 2e-15
Identities = 38/116 (32%), Positives = 58/116 (49%)
Frame = +2
Query: 151 GVRTIKTFRSIVNNAEGHENIPFCEKDMINYVNNEQHLIGKEGDGKALMSYFSKMREQNS 210
GVR ++ GHE++ F + D+ N++ + + GD A +SY + +
Sbjct: 20 GVRACHIMALMLGPKGGHESLGFTKTDLSNHIAKPKRERIQNGDAAAALSYLEGKADNDP 199
Query: 211 NFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYLTNKFDMPFATFVGV 266
FFY D + N+FW D SR Y FGDV+ FD+TY NK++ P F+ V
Sbjct: 200 MFFYKFTKTGDESLENLFWCDGVSRMDYNVFGDVIAFDSTYKKNKYNKPLVVFLHV 367
>AV780484
Length = 529
Score = 61.6 bits (148), Expect = 4e-10
Identities = 29/65 (44%), Positives = 39/65 (59%)
Frame = -1
Query: 196 KALMSYFSKMREQNSNFFYDIDLDDDFHVRNVFWADARSRATYEYFGDVVTFDTTYLTNK 255
KA+ YF + +N NFFY IDLD + H+ +VFW D + R YE +V T YL NK
Sbjct: 205 KAMTEYFVSTQGENPNFFYAIDLDLNRHLTSVFWVDIKGRLDYETSMMLVLIHTHYLKNK 26
Query: 256 FDMPF 260
+ +PF
Sbjct: 25 YKIPF 11
>AV409041
Length = 349
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +3
Query: 31 KPATGMRFSCIDDVKTLYREYALKKGFRWKTRTSKK-RDDGETCYAILVCTREGSQGSEI 89
+P + F + Y+EYA GF +S++ R E A C R G++ +
Sbjct: 30 EPHYDIEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNK-QQS 206
Query: 90 PCTLKTPPSKTKNCPAKICIKLEKDGLWYISKFESRHSHKTSPTK 134
+ PS C A + +K +DG WY+ F H+H+ P +
Sbjct: 207 DDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQ 341
>AV423237
Length = 310
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/62 (38%), Positives = 33/62 (52%)
Frame = +2
Query: 230 ADARSRATYEYFGDVVTFDTTYLTNKFDMPFATFVGVNHHGQSTLLGCGLLSGEDTESFV 289
ADA SR Y YFGD V FDTT + N + +++ G + + L++ E SFV
Sbjct: 14 ADATSRMNYSYFGDAVIFDTT-IDNHIESICSSW-G*SSWATCVIWLVALIANESESSFV 187
Query: 290 WL 291
WL
Sbjct: 188 WL 193
>AV776853
Length = 625
Score = 37.0 bits (84), Expect = 0.010
Identities = 31/130 (23%), Positives = 51/130 (38%), Gaps = 10/130 (7%)
Frame = +1
Query: 15 DEGMEVDNSDDD-----EACWKPATGMRFSCIDDVKTLYREYALKKGFRWKTRTSKKRDD 69
DE +VD DD + + F ++ Y+ YA +GF + +
Sbjct: 160 DEAEDVDAKDDHYKRILDLSADDIRHLDFGSEEEAYQFYQAYAKYQGFIVRKDDIGRDYH 339
Query: 70 GETCYAILVCTREGSQGSE----IPCTLKTPPSKTKNCPAKICIKLE-KDGLWYISKFES 124
G VC R+G + + P NC AK+ + L+ K G W + FE
Sbjct: 340 GNVNMRQFVCNRQGLRSKKHYNRTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEE 519
Query: 125 RHSHKTSPTK 134
H+H+ +P +
Sbjct: 520 CHNHELTPAR 549
>TC12220
Length = 473
Score = 36.6 bits (83), Expect = 0.014
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 548 EFRGILCCHVLSVCTRERVKNVPEKYVLTRWKKN 581
E+ G+LC H L V ++ VP +Y+L RW +N
Sbjct: 1 EYEGVLCRHPLRVFXILELREVPSRYILHRWTRN 102
>TC17583 weakly similar to UP|Q9LIE5 (Q9LIE5) Far-red impaired response
protein, mutator-like transposase-like protein,
phytochrome A signaling protein-like, partial (3%)
Length = 666
Score = 36.6 bits (83), Expect = 0.014
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = +3
Query: 238 YEYFGDVVTFDTTYLTNKFDMPFA 261
YEYFGDVV+ DTTY TN P A
Sbjct: 18 YEYFGDVVSLDTTYSTNNAYRPLA 89
>BP066608
Length = 530
Score = 30.8 bits (68), Expect = 0.75
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 578 WKKNIKRKHSYIKSSYCARELKPKMDRFDKLCKHFYEIAEVAAES-EDATKALH 630
W+K++KR+H+ + + ++ R +K C F+E+ + ED K ++
Sbjct: 527 WRKDVKRRHTLTRCXFDHLAGNVELQRLNKACDAFHEVVFAGINTDEDLLKVMN 366
>TC10668
Length = 643
Score = 30.4 bits (67), Expect = 0.98
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Frame = +3
Query: 595 ARELKPKMDRFDKLCKHFYEIAEVAAESE----DATKALHETLHQFNSNKDGITDIVNRS 650
+ +L KM F ++ + +AEVAA E + T L LH+F DG++ V+
Sbjct: 153 SEQLMEKMPMFGEIQELNSFVAEVAASDEVKRHEETTELQTKLHEFEKLLDGMSKEVDNL 332
Query: 651 FID 653
F D
Sbjct: 333 FAD 341
>AV407687
Length = 419
Score = 30.0 bits (66), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 263 FVGVNHHGQSTLLGCGLLSGEDTE 286
F+G+N++GQ + G GL GE+ E
Sbjct: 267 FIGINYYGQEVVCGSGLKLGENDE 338
>TC14002 similar to UP|Q9ST13 (Q9ST13) S-locus protein 8 (Fragment), partial
(39%)
Length = 510
Score = 28.9 bits (63), Expect = 2.8
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = +3
Query: 142 RTIEINEDAGVRTIKTFRSIVNNAEGHENIPFCEKDMINYVNNEQHLIGKEGDGKAL 198
+ + ++++ +T++ F+ I HEN+PF E D I +VN L+ G G AL
Sbjct: 87 KVLVVDQNGQQKTLE-FKFITTRVCRHENVPFNEADDIAFVNGA--LVFPCGRGTAL 248
>BP066350
Length = 493
Score = 28.9 bits (63), Expect = 2.8
Identities = 20/52 (38%), Positives = 23/52 (43%)
Frame = +2
Query: 90 PCTLKTPPSKTKNCPAKICIKLEKDGLWYISKFESRHSHKTSPTKRMDLHVK 141
P TL PP K K I I L L + S ESR H T P + HV+
Sbjct: 128 PTTLNKPPKKKKPYFLFILISLLHRLLHHYSLLESREKHVTCPVIKQS-HVR 280
>AU089246
Length = 392
Score = 28.5 bits (62), Expect = 3.7
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = +3
Query: 439 KQYDNALSSRAEKEFEADFNSLDTTIPCVSNSSIEKQLQGEYTHAKFKEVQAEF 492
K+Y N ++ FE+ SLD TIP S+ +I L + T +F + +F
Sbjct: 177 KKYPN--KDEKDRRFESFQQSLDRTIPSTSSHAINFPLLADRTADEFDAFRTKF 332
>TC16450 similar to UP|Q94A73 (Q94A73) AT5g66560/K1F13_23, partial (10%)
Length = 528
Score = 27.7 bits (60), Expect = 6.3
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +2
Query: 9 DCGSIHDEGMEVDNSDDDEACWKPATGMRFSC 40
+C S+ ++DNS D W+ + G +FSC
Sbjct: 170 ECSSMKRVIAKIDNSAVDGGGWRASLGRKFSC 265
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,084,023
Number of Sequences: 28460
Number of extensions: 190905
Number of successful extensions: 974
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of query: 688
length of database: 4,897,600
effective HSP length: 97
effective length of query: 591
effective length of database: 2,136,980
effective search space: 1262955180
effective search space used: 1262955180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146941.15