TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146941.12 - phase: 0 
         (146 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19040 homologue to UP|Q9EZV9 (Q9EZV9) Elongation factor Tu (Fr...   139  2e-34
TC10722                                                                85  4e-18
TC9392                                                                 56  3e-09
BP050242                                                               31  0.075
AU251457                                                               30  0.22
TC15414 weakly similar to UP|O81655 (O81655) Senescence-associat...    26  2.4
TC14422 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor (1...    26  2.4
TC14494 similar to UP|Q8L7C3 (Q8L7C3) Expressed protein, partial...    26  3.1
BP082711                                                               25  4.1
CB828176                                                               25  4.1
TC20277 homologue to UP|Q7Y067 (Q7Y067) Plasma membrane H+-ATPas...    25  5.3
AW164024                                                               25  5.3
TC11801                                                                25  5.3
TC10103 weakly similar to AAS47616 (AAS47616) At4g39570, partial...    25  7.0
BP063528                                                               25  7.0
TC8392 similar to UP|Q8LK52 (Q8LK52) Cp10-like protein, partial ...    25  7.0
BP045881                                                               25  7.0
BP078534                                                               24  9.1
AU089276                                                               24  9.1

>TC19040 homologue to UP|Q9EZV9 (Q9EZV9) Elongation factor Tu (Fragment),
           partial (5%)
          Length = 721

 Score =  139 bits (350), Expect = 2e-34
 Identities = 69/143 (48%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
 Frame = +3

Query: 1   MRPPVKRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESEL-L 59
           MRPP + V YKVGD+VEV  KEEGF  SY+EAT+VS L  G+Y ++YK L+ D+E+++ L
Sbjct: 69  MRPPQRTVVYKVGDEVEVIGKEEGFYTSYYEATVVSLLPFGRYEVQYKTLIVDEETKIPL 248

Query: 60  METLFPKDLRPLPPRVHNPWRFELNQKVDVFDNDGWWVGEIASEKILMEKSYYYSVYFDY 119
            E +  KDLRP+PP V+    ++L Q V+ FDNDGWW G I   +I       Y+VYF  
Sbjct: 249 KEAVLAKDLRPVPPLVNTRGEYKLYQAVNTFDNDGWWYGMIVG-RISCTGGKGYNVYFSS 425

Query: 120 CHQTIYYPCDQIRVHQELVWGDW 142
            ++T+ Y C +IRVH E    +W
Sbjct: 426 TNETLPYNCSRIRVHHEFFDAEW 494


>TC10722 
          Length = 500

 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
 Frame = +2

Query: 50  LLKDDESEL-LMETLFPKDLRPLPPRVHNPW-RFELNQKVDVFDNDGWWVGEIASEKILM 107
           L+ D+E+++ L ET+ PKDLRP+PP V      +E+ Q V+VFDNDGWW G+I    +  
Sbjct: 5   LIVDEETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIG--LTG 178

Query: 108 EKSYYYSVYFDYCHQTIYYPCDQIRVHQELVWGDW 142
            K YY  VYF   ++T+ Y C ++RVH + + GDW
Sbjct: 179 VKGYY--VYFSSTNETLPYHCSRLRVHHDFIHGDW 277


>TC9392 
          Length = 650

 Score = 55.8 bits (133), Expect = 3e-09
 Identities = 28/74 (37%), Positives = 46/74 (61%), Gaps = 3/74 (4%)
 Frame = +1

Query: 3   PPV---KRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELL 59
           PP+   K+  +++GD VEV SK +G+ G++F A +V     GK+++ +K+ L D   +LL
Sbjct: 427 PPIQQQKQELFRIGDLVEVSSKVKGYRGTWFLAEVVELKVQGKFLVEHKHRLHDVTGKLL 606

Query: 60  METLFPKDLRPLPP 73
            E +    +RPLPP
Sbjct: 607 KEKIDDDHIRPLPP 648



 Score = 35.4 bits (80), Expect = 0.004
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
 Frame = +1

Query: 3   PPVKRVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMET 62
           PP    D+K+GDKV+   K     GS+ E  +V  LE GK+ + +               
Sbjct: 229 PPETHHDFKIGDKVDAYDK-----GSWREGHLVKELEDGKFAVDFN-------------- 351

Query: 63  LFPKDLRPLPP---RVHNPW 79
             PK L   P    R H  W
Sbjct: 352 -LPKQLNEFPKENLRTHREW 408


>BP050242 
          Length = 585

 Score = 31.2 bits (69), Expect = 0.075
 Identities = 25/79 (31%), Positives = 39/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 2   RPPVK-RVDYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESELLM 60
           RPP+K   D+K GDKV+  + +    GS+ E  I S L  G+  + Y     +D ++   
Sbjct: 349 RPPLKPHHDFKSGDKVDTYNDK----GSWLEGHITSTLSDGRSFVCY-----NDPNQ--- 492

Query: 61  ETLFPKDLRPLPPRVHNPW 79
           + LFP +      R H+ W
Sbjct: 493 KFLFPNE----KLRAHHEW 537


>AU251457 
          Length = 389

 Score = 29.6 bits (65), Expect = 0.22
 Identities = 12/32 (37%), Positives = 18/32 (55%)
 Frame = +1

Query: 4   PVKRVDYKVGDKVEVCSKEEGFVGSYFEATIV 35
           P     YKV DK+E+  ++ G  G +F  T+V
Sbjct: 271 PWNNPTYKVDDKIELLCQDSGIRGCWFRCTVV 366


>TC15414 weakly similar to UP|O81655 (O81655) Senescence-associated protein
           5, partial (47%)
          Length = 448

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 9   DYKVGDKVEVCSKEEGFVGSYFEATIVSCLESGKYVIRYKNLLKDDESE 57
           +Y++GD      K     G++    I SCL SGK    ++N   +D +E
Sbjct: 205 EYRLGDYSNWLQKRVNSTGNWNR--IRSCLGSGKLCSEFRNRFVNDTAE 345


>TC14422 similar to UP|Q9M5A8 (Q9M5A8) Chaperonin 21 precursor (10 kDa
           chaperonin) (Protein Cpn10) (groES protein), partial
           (93%)
          Length = 1077

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  LLKDDESELLMETLFPKDLRPLPPRV 75
           +LKDD+   ++ET   KDL+PL  RV
Sbjct: 548 ILKDDDIVGILETEDIKDLKPLNDRV 625


>TC14494 similar to UP|Q8L7C3 (Q8L7C3) Expressed protein, partial (68%)
          Length = 697

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 92  NDGWWVGEIASEKILMEKSYYYSVYFDYCHQTI 124
           N  WW GE+  E++  ++     V+ D+   T+
Sbjct: 180 NGKWWEGEVLREELAADRFQCDRVWVDWLDSTV 278


>BP082711 
          Length = 379

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 100 IASEKILMEKSYYYSVYFDYCHQTIYY 126
           +ASE + +   YYY  Y+ Y +   YY
Sbjct: 264 VASESLSLCSYYYYYYYYYYYYYYYYY 184


>CB828176 
          Length = 363

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 11/37 (29%), Positives = 16/37 (42%)
 Frame = +3

Query: 106 LMEKSYYYSVYFDYCHQTIYYPCDQIRVHQELVWGDW 142
           +M  S Y+S    Y  + I +  D  R +    W DW
Sbjct: 126 MMRNSVYFSKVRFYGKRCISFSLDDFRYYPRKQWHDW 236


>TC20277 homologue to UP|Q7Y067 (Q7Y067) Plasma membrane H+-ATPase, partial
           (3%)
          Length = 584

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -3

Query: 124 IYYPCDQIRVHQELVWGDW 142
           + +P  QIRVH  L W DW
Sbjct: 474 VCHPSGQIRVHHRLCW-DW 421


>AW164024 
          Length = 312

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 26  VGSYFEATIVSCLESGKYVIRYKNLLKDDESELLMETLFPKDLRPLP 72
           + S F A +   L+ G+Y +  + L  DD +E L+    P    P+P
Sbjct: 139 ISSVFSADMSENLDDGEYWLPPQFLSDDDATESLLPFGAPNRRPPMP 279


>TC11801 
          Length = 804

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 56  SELLMETLFPKDLRPLPPRV 75
           S L +E L P  +RPLPPR+
Sbjct: 672 SNLSLEGLSPHWIRPLPPRL 731


>TC10103 weakly similar to AAS47616 (AAS47616) At4g39570, partial (15%)
          Length = 318

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 59  LMETLFPKDLRPLPPRVHNP 78
           L++  FP  L P PP  H P
Sbjct: 212 LLQRAFPSQLHPTPPLPHAP 271


>BP063528 
          Length = 475

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (52%), Gaps = 3/30 (10%)
 Frame = -2

Query: 102 SEKILMEKSYYYSVYFDYCHQTIY---YPC 128
           S++  + K YY+S Y  +CH       YPC
Sbjct: 228 SDRHTVVKFYYFSFYQIFCHLIFIVASYPC 139


>TC8392 similar to UP|Q8LK52 (Q8LK52) Cp10-like protein, partial (81%)
          Length = 1014

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 50  LLKDDESELLMETLFPKDLRPLPPRV 75
           +LKDD+   ++ET   +DL+PL  RV
Sbjct: 535 ILKDDDIVGILETDEVQDLKPLNDRV 612


>BP045881 
          Length = 420

 Score = 24.6 bits (52), Expect = 7.0
 Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 1/47 (2%)
 Frame = -2

Query: 53  DDESELLMETLFPKDLRPLPPRVHNPWRFELNQKVDVF-DNDGWWVG 98
           D   +    TLFP+ LRP+   V + +   L  + D F D++G+  G
Sbjct: 392 DPHEDFAFSTLFPEFLRPVIDPVASIFHRMLCGRSDAFNDSEGYTFG 252


>BP078534 
          Length = 410

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 125 YYPCDQIRVHQELVW 139
           Y PC +IRVH  L+W
Sbjct: 164 YSPCVKIRVHWLLMW 120


>AU089276 
          Length = 563

 Score = 24.3 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 108 EKSYYYSVYFDYCHQ 122
           ++ Y Y VYF  CHQ
Sbjct: 138 DQGYQYRVYFHTCHQ 94


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,997
Number of Sequences: 28460
Number of extensions: 43743
Number of successful extensions: 284
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of query: 146
length of database: 4,897,600
effective HSP length: 82
effective length of query: 64
effective length of database: 2,563,880
effective search space: 164088320
effective search space used: 164088320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)