TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146940.4 + phase: 1 /pseudo
         (674 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11810                                                                33  0.20
BP059696                                                               29  2.2
TC11608 similar to GB|AAF68117.1|7715599|AC010793 F20B17.17 {Ara...    28  6.3
BE122609                                                               27  8.2
TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, ...    27  8.2
BP049671                                                               27  8.2

>TC11810 
          Length = 640

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 572 NRLEHQRLNDLVFVRYNLMLENRNNKIRNYD 602
           NRL  ++LND+VFV YNL L     + R+ D
Sbjct: 3   NRLSQKKLNDIVFVHYNLRLRECQVRKRSRD 95


>BP059696 
          Length = 206

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -1

Query: 240 CCSDSDR*CCKLCCCW*VIGERVPWP--VLVSLCNSLH 275
           CC     *CC LCCCW        W    L+ LC +LH
Sbjct: 164 CC-----*CCCLCCCW--------WKCLCLMPLCLALH 90


>TC11608 similar to GB|AAF68117.1|7715599|AC010793 F20B17.17 {Arabidopsis
           thaliana;} , partial (22%)
          Length = 739

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 568 KKKRNRLEHQRLNDLVFVRYNLMLENRNN 596
           ++   RL    LNDLV++ YNL L  + N
Sbjct: 190 QRSGTRLIENTLNDLVYINYNLKLARQMN 276


>BE122609 
          Length = 356

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = +3

Query: 510 LWKEICYRSSKFTISR*MVRTLRVSSTTFAKIGDSGSKSNL*LFWLREKLECV*AY 565
           LW E  +++  + IS *+V  L  + T FA I    +  +L*L  L E+LE  *AY
Sbjct: 168 LWNESEHKTKDYHISC*VVEELLTAYT*FAIICC*SALLDL*LIRL*EELENF*AY 335


>TC15261 weakly similar to UP|Q9ZQ55 (Q9ZQ55) At2g22570 protein, partial
           (75%)
          Length = 1031

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 112 CKMVHCCIYSLQCSKFTIFSVCGRCSLLHGS 142
           C     C++S  C K  + S  G+C  +H S
Sbjct: 519 CMRAGFCLFSFVCEKSPVPSASGKCDCVHRS 611


>BP049671 
          Length = 488

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 9/17 (52%), Positives = 10/17 (57%), Gaps = 1/17 (5%)
 Frame = +3

Query: 240 CCSDS-DR*CCKLCCCW 255
           CC D   R  C +CCCW
Sbjct: 306 CCQDHHSRNTCPICCCW 356


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.366    0.162    0.645 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,588,417
Number of Sequences: 28460
Number of extensions: 245702
Number of successful extensions: 4188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 2724
length of query: 674
length of database: 4,897,600
effective HSP length: 96
effective length of query: 578
effective length of database: 2,165,440
effective search space: 1251624320
effective search space used: 1251624320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 58 (26.9 bits)