BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146940.1 - phase: 0
(285 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18779 similar to UP|AAS07149 (AAS07149) Expressed protein, par... 144 2e-35
TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-b... 32 0.16
TC10118 similar to PIR|T00956|T00956 translation initiation fact... 27 3.0
BP041998 27 3.0
TC8972 similar to UP|RK3B_ARATH (Q9LRN8) 50S ribosomal protein L... 27 5.2
BP053877 26 6.8
TC20160 26 6.8
AV410119 26 8.9
TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory pro... 26 8.9
TC18365 similar to UP|Q940G9 (Q940G9) Periaxin-like protein, par... 26 8.9
>TC18779 similar to UP|AAS07149 (AAS07149) Expressed protein, partial (24%)
Length = 640
Score = 144 bits (363), Expect = 2e-35
Identities = 68/102 (66%), Positives = 86/102 (83%)
Frame = +3
Query: 51 DASGHRSNPTHLIIMVNGLIGSAHNWKYAAKQFLKRYPYDVIVHCSECNSSTLTFDGVDV 110
D++ S P HL+IMVNG+IGSA +W+YAA++F+K+ P +VIVH SECNSS LTFDGVD
Sbjct: 261 DSAVASSIPPHLVIMVNGIIGSAADWRYAAQEFVKKLPDEVIVHRSECNSSRLTFDGVDT 440
Query: 111 TGNRLAEEVISVIKRHPSVRKISFIAHSLGGLIARYAIAKLY 152
G RLAEEV+SV++R P V+KISF+AHSLGGL+ARYAI +LY
Sbjct: 441 MGERLAEEVLSVVRRWPEVQKISFVAHSLGGLVARYAIGRLY 566
>TC9372 weakly similar to UP|AAR87711 (AAR87711) Salicylic acid-binding
protein 2, partial (65%)
Length = 968
Score = 31.6 bits (70), Expect = 0.16
Identities = 24/92 (26%), Positives = 46/92 (49%), Gaps = 1/92 (1%)
Frame = +2
Query: 64 IMVNGLIGSAHNWKYAAKQFLKRYPYDV-IVHCSECNSSTLTFDGVDVTGNRLAEEVISV 122
++V+G A W Y K L+ + V ++ + + + VD T ++ +E ++ +
Sbjct: 29 VLVHGACHGAWCW-YKVKPRLESAGHKVTVIDLAASGINMKKIEEVD-TISQYSEPLLQL 202
Query: 123 IKRHPSVRKISFIAHSLGGLIARYAIAKLYER 154
+ PS +K+ + HSLGGL A+ K E+
Sbjct: 203 MASIPSNKKVILVGHSLGGLNISLAMDKFPEK 298
>TC10118 similar to PIR|T00956|T00956 translation initiation factor eIF-2
gamma chain F20D22.6 - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (21%)
Length = 575
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = -1
Query: 3 SQQIPKVQHSVVDVQINNKNIKKLKFPKFGCF 34
S Q + + V+I N+N + KF KF CF
Sbjct: 503 SDQTDNFSNRLTAVRIKNRNDNETKFAKFKCF 408
>BP041998
Length = 485
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = -1
Query: 128 SVRKISFIAHSLGGLIARYAIAKLYERDISKELSQGNVHCEGQISNQE 175
SV K F L L++++ Y+R+ +L+ C G +S++E
Sbjct: 485 SVVKFCFTVKRLSNLLSQHRAG*SYQREPELQLASEQAPCSGWVSSRE 342
>TC8972 similar to UP|RK3B_ARATH (Q9LRN8) 50S ribosomal protein L3-2,
chloroplast precursor, partial (31%)
Length = 643
Score = 26.6 bits (57), Expect = 5.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +3
Query: 230 GKTGKHLFLTDGKNEKP-----PLLLQMVRDSEDIKFMSAL 265
G TG +F+TD EKP P V + EDI M L
Sbjct: 153 GATGNFVFITDAVYEKPDISILPFPTYFVPEDEDIDNMKPL 275
>BP053877
Length = 438
Score = 26.2 bits (56), Expect = 6.8
Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 5/78 (6%)
Frame = +3
Query: 49 VVDASGHRSNPTHLIIMVNGL---IGSAHNWKYAAKQFLKRYP--YDVIVHCSECNSSTL 103
+VDA H + H ++N + +GS H + K+ +K P + H +EC L
Sbjct: 138 IVDAKDHMISILHNSAILN*ISLVLGSCHR-ETNKKETIKDKPRKWTN*FHETEC---LL 305
Query: 104 TFDGVDVTGNRLAEEVIS 121
+GVD+ + LAE ++S
Sbjct: 306 FLEGVDLASSGLAEPILS 359
>TC20160
Length = 466
Score = 26.2 bits (56), Expect = 6.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 56 RSNPTHLIIMVNGLIGSAHNW 76
RS P HLI+ G++ S +NW
Sbjct: 88 RSMPWHLIMQTRGMMVSPNNW 26
>AV410119
Length = 433
Score = 25.8 bits (55), Expect = 8.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 201 LGCRGHKQVPLLCG 214
+ C+GHK +P LCG
Sbjct: 374 MACKGHKLLPSLCG 333
>TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
homolog - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (51%)
Length = 770
Score = 25.8 bits (55), Expect = 8.9
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 1/56 (1%)
Frame = +3
Query: 58 NPTHLIIMVNGLIGSAHNWKYAAKQFLKRYPYDVIVHCSECNSSTL-TFDGVDVTG 112
+P I+V L + W Y+ +FLK Y V+ C SST T +G V G
Sbjct: 195 SPNAKFILVGTLDNNLRLWNYSTGRFLKTYTGH--VNSKYCISSTFSTTNGKYVVG 356
>TC18365 similar to UP|Q940G9 (Q940G9) Periaxin-like protein, partial (19%)
Length = 404
Score = 25.8 bits (55), Expect = 8.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 192 NFITSATPHLGCRG 205
NF+ S PH GCRG
Sbjct: 125 NFVVSKQPHNGCRG 166
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,827,567
Number of Sequences: 28460
Number of extensions: 65111
Number of successful extensions: 291
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of query: 285
length of database: 4,897,600
effective HSP length: 89
effective length of query: 196
effective length of database: 2,364,660
effective search space: 463473360
effective search space used: 463473360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146940.1