BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146914.1 + phase: 0 /pseudo
(369 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1... 69 2e-12
AV419050 59 1e-09
BP067368 58 3e-09
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 58 3e-09
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei... 57 5e-09
BP067278 49 1e-06
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 48 3e-06
BP034914 47 4e-06
TC15182 similar to UP|Q9ZQW9 (Q9ZQW9) U2 snRNP auxiliary factor,... 45 1e-05
AV780303 45 1e-05
TC10006 similar to UP|P93396 (P93396) Transformer-SR ribonucleop... 45 3e-05
TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526 At2g01... 43 1e-04
BU494286 42 2e-04
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 41 4e-04
TC11195 UP|Q9FJH4 (Q9FJH4) Similarity to ring finger protein, pa... 40 5e-04
TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like ... 40 6e-04
AU088817 40 8e-04
TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-... 40 8e-04
BP040010 39 0.001
TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor ... 39 0.001
>TC8296 similar to GB|AAN28790.1|23505861|AY143851 At5g64200/MSJ1_4
{Arabidopsis thaliana;}, partial (55%)
Length = 1276
Score = 68.6 bits (166), Expect = 2e-12
Identities = 57/139 (41%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Frame = +2
Query: 74 DSDRKSQLQSIQNKLKKKPTTESRVSEKTNRD--YSSRDSDRRKRRSRSRSRERY----- 126
+++R + + I+++ + K + SR + +RD SSRD D R RRSRSRS ++Y
Sbjct: 374 NAERIHKGRIIESEERAKQGSRSRSPRRRHRDDHRSSRDRDYR-RRSRSRSYDKYERGDR 550
Query: 127 ---RDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGR 183
RDRD RRRSRSR + Y R R R D SRSRS S R RR R
Sbjct: 551 HRGRDRDYRRRSRSRSASLDYKGRGRGR-YDDEPSRSRSRSVDSRSPARRSPSPRRSPSP 727
Query: 184 RRS----RSVSPRKQRRSE 198
+RS RS SPRK R E
Sbjct: 728 KRSVSPKRSTSPRKSPRGE 784
Score = 42.7 bits (99), Expect = 1e-04
Identities = 39/121 (32%), Positives = 55/121 (45%)
Frame = +2
Query: 118 SRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRER 177
S R+++ R R RRR R R+SR DRD R RSRSRS +RG R R
Sbjct: 410 SEERAKQGSRSRSPRRRHRDDHRSSR----DRDYRR---RSRSRSYDKYERG----DRHR 556
Query: 178 GREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLIHGYDNMAPAE 237
GR++ RR RS +S+ + +G+G +G+ D+ +PA
Sbjct: 557 GRDRDYRR----------RSRSRSASLDYKGRG----RGRYDDEPSRSRSRSVDSRSPAR 694
Query: 238 R 238
R
Sbjct: 695 R 697
Score = 26.2 bits (56), Expect = 9.2
Identities = 27/104 (25%), Positives = 45/104 (42%), Gaps = 1/104 (0%)
Frame = +2
Query: 112 DRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRD-RDRDSGRSRSRSDSDVDRGR 170
DRR SR + RY+ D ++ R R+ + G + R + +GR
Sbjct: 233 DRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAER----IHKGR 400
Query: 171 DRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMR 214
ER ++ SRS SPR++ R + +SS ++ + S R
Sbjct: 401 IIESEERAKQG----SRSRSPRRRHRDDHRSSRDRDYRRRSRSR 520
>AV419050
Length = 409
Score = 58.9 bits (141), Expect = 1e-09
Identities = 43/93 (46%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = +1
Query: 123 RERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERG---R 179
R+R RDR+ RR R+R R DRDRDR R S RSRSRS S +D GR R R R R
Sbjct: 13 RDRDRDRERRREKEERDRGDR--DRDRDRTR-SKRSRSRSRS-IDHGRSRHARSRSPSER 180
Query: 180 EKGRRRSRSVS---PRKQRRSEVKSSDVKERGK 209
RR R+ S PRK+ R + D K+ K
Sbjct: 181 SHRRRHHRTPSPDQPRKRHRRDSVEDDHKDTKK 279
Score = 48.1 bits (113), Expect = 2e-06
Identities = 33/81 (40%), Positives = 36/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 97 RVSEKTNRDYSSRDSDR---RKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDR 153
R EK RD RD DR R +RSRSRSR R RSRS S R
Sbjct: 37 RRREKEERDRGDRDRDRDRTRSKRSRSRSRSIDHGRSRHARSRSPSERSHRRRHHRTPSP 216
Query: 154 DSGRSRSRSDSDVDRGRDRRK 174
D R R R DS D +D +K
Sbjct: 217 DQPRKRHRRDSVEDDHKDTKK 279
Score = 28.5 bits (62), Expect = 1.9
Identities = 25/57 (43%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Frame = -3
Query: 109 RDSDRRKRRSRSR--SRERYRDRDSRRRSRSRERN-SRYSDRDRDRDRDSGRSRSRS 162
R R+R R R S ER R+RD R RSR R+ S S R R SRSRS
Sbjct: 179 RSEGERERAWRERPWSIERERERDLLLRVRSRSRSLSPRSRSSFSRLRSLSLSRSRS 9
>BP067368
Length = 322
Score = 57.8 bits (138), Expect = 3e-09
Identities = 39/100 (39%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = -2
Query: 85 QNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDS-RRRSRSRERNSR 143
Q+K + E RV E N D R+ R + + + RER R+R S R R R +
Sbjct: 294 QHKSAPSRSEEPRVREDRNVD-RDREKSRERVKDKDGERERSRERSSDRARDRDHREDRH 118
Query: 144 YSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGR 183
+ DRDR RDRD R R R D DV D R R RE+ R
Sbjct: 117 HRDRDRTRDRDRDRERER-DRDVTEIEDVTDRGRERERDR 1
Score = 56.6 bits (135), Expect = 6e-09
Identities = 39/86 (45%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Frame = -2
Query: 112 DRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRD 171
DR R R +SRER +D+D R RSRER+S DR RDRD R D D R RD
Sbjct: 246 DRNVDRDREKSRERVKDKDG-ERERSRERSS-----DRARDRDHREDRHHRDRDRTRDRD 85
Query: 172 R-RKRERGR---------EKGRRRSR 187
R R+RER R ++GR R R
Sbjct: 84 RDRERERDRDVTEIEDVTDRGRERER 7
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 57.8 bits (138), Expect = 3e-09
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Frame = +1
Query: 89 KKKPTTESRVSEKTNRDYSSRDSDR---RKRRSRSRSRERYRDRDSRRRSRSRERNSRYS 145
K+K E R++ + + + ++ RKRR S RE++RD+D R R R R R+ R S
Sbjct: 139 KEKAIEEERLAREREAEERRKRKEQEYERKRRGDSSDREKHRDKD-RDRERDRYRD-RDS 312
Query: 146 DRDRDRDRDSGRSRSRSDSDVDRGRDRR---KRERGREKGRRRSRSVSPRKQ--RRS 197
DR+R R+RD R D RG D R +R GR++ R RSRS SP K RRS
Sbjct: 313 DRERSRERD-----VRGYRDGGRGVDSRLGNRRNGGRDRYRDRSRSRSPVKNSYRRS 468
Score = 45.8 bits (107), Expect = 1e-05
Identities = 36/102 (35%), Positives = 46/102 (44%), Gaps = 17/102 (16%)
Frame = +1
Query: 74 DSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRR 133
+ +R ++ + + + K+K E K D S R+ R K R R R+RYRDRDS R
Sbjct: 154 EEERLAREREAEERRKRK---EQEYERKRRGDSSDREKHRDK--DRDRERDRYRDRDSDR 318
Query: 134 RSRSRER-----------------NSRYSDRDRDRDRDSGRS 158
RSRER N R RDR RDR RS
Sbjct: 319 E-RSRERDVRGYRDGGRGVDSRLGNRRNGGRDRYRDRSRSRS 441
>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
factor) (Cytokine IK), partial (6%)
Length = 492
Score = 57.0 bits (136), Expect = 5e-09
Identities = 45/129 (34%), Positives = 62/129 (47%), Gaps = 7/129 (5%)
Frame = +1
Query: 66 TASTTA---PSDSDRKSQLQSIQNKLKK-KPTTESRVSEKTNRDYSSRDSDRRKRRSRSR 121
TA+TT+ P + K + L K K T++ E + + +D+R+R +
Sbjct: 109 TAATTS*FIPKSNTMKRPTDDVAATLPKPKFLTKAEREELALKRRQDQIADQRRRHQQIL 288
Query: 122 SRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGRE- 180
S D RR R R+R DRDRDRDR+ R R R DR R+RR RER R+
Sbjct: 289 SDSNPPSADPNRRDRDRDR-----DRDRDRDRERDRERDR-----DRDRERRNRERERDE 438
Query: 181 --KGRRRSR 187
K R R+R
Sbjct: 439 ENKARERAR 465
Score = 30.0 bits (66), Expect = 0.64
Identities = 39/103 (37%), Positives = 45/103 (42%), Gaps = 9/103 (8%)
Frame = -2
Query: 117 RSRSRS---RERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRR 173
RSRS S R R S RS SR R SR R RSRSRS S + R R
Sbjct: 491 RSRSASFSKRARSLALFSSSRSLSRFRRSRSLSLSLSRSLSRSRSRSRSLS-LSRSRRLG 315
Query: 174 KRERGREKGR----RRSRSV--SPRKQRRSEVKSSDVKERGKG 210
E G E R RR S S R+ R + +S+ V+ G G
Sbjct: 314 SAEGGLESERIC*WRRLWSAI*S*RRFRANSSRSALVRNFGLG 186
>BP067278
Length = 562
Score = 49.3 bits (116), Expect = 1e-06
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 30/141 (21%)
Frame = +1
Query: 112 DRRKRRSRSRSRERYRDRDSRRRSRSR-----ERNSRYSDRDR----------------- 149
++ K R R RSR D +RRSRS E SR+ R R
Sbjct: 34 EKSKHRERKRSRSVSVDEKPQRRSRSSPRKVDESGSRHKKRSRSKSVEDKHNFPEKLEEN 213
Query: 150 ----DRDRDSGRSRSRSD---SDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSS 202
R D SRSRS D D RK + + + +R+RS S + RS+ KS
Sbjct: 214 RIRKSRHNDKRHSRSRSTESRDQTDAREDERKYGKSKHRDSKRTRSKSVEGKHRSKDKSG 393
Query: 203 DVKE-RGKGSEMRKGKNVGVD 222
+VK+ + K + R+ ++V ++
Sbjct: 394 EVKDKKSKHRDRRRSRSVSLE 456
Score = 48.1 bits (113), Expect = 2e-06
Identities = 37/120 (30%), Positives = 62/120 (50%), Gaps = 3/120 (2%)
Frame = +1
Query: 74 DSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRR 133
+S + + +S ++ K ++ E NR SR +D+R RSRS +SR
Sbjct: 130 ESGSRHKKRSRSKSVEDKHNFPEKLEE--NRIRKSRHNDKRHSRSRS--------TESRD 279
Query: 134 RSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRR---KRERGREKGRRRSRSVS 190
++ +RE +Y + + RDS R+RS+S R +D+ K ++ + + RRRSRSVS
Sbjct: 280 QTDAREDERKYG---KSKHRDSKRTRSKSVEGKHRSKDKSGEVKDKKSKHRDRRRSRSVS 450
Score = 27.3 bits (59), Expect = 4.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 175 RERGREKGRRRSRSVS--PRKQRRSEVKSSDVKERGKGSEMR 214
+E+ + + R+RSRSVS + QRRS V E G + R
Sbjct: 31 QEKSKHRERKRSRSVSVDEKPQRRSRSSPRKVDESGSRHKKR 156
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 47.8 bits (112), Expect = 3e-06
Identities = 36/123 (29%), Positives = 50/123 (40%)
Frame = +2
Query: 57 KASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKR 116
KA SSS + SDS S+ + + T S S ++ D SS DS+ +R
Sbjct: 599 KAKSSSKKAKRKHRSDSDSGSDSEDSVFETESGSSSVTGSDYSSGSSSDSSSSDSEEERR 778
Query: 117 RSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRE 176
R R + + + + R+ +YS D S S SDSD D RRKR
Sbjct: 779 RRRKKKTQ---------KKKKGRRHKKYSSSSESSD-----SESASDSDSDDKSSRRKRR 916
Query: 177 RGR 179
R
Sbjct: 917 HSR 925
Score = 45.4 bits (106), Expect = 1e-05
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 11/150 (7%)
Frame = +2
Query: 77 RKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSR 136
R S+ Q ++N + RV+ + D + D D ++ +++S S++ R S S
Sbjct: 500 RPSRTQQLKNP-------KLRVNVSVSYDLENNDVDDKEEKAKSSSKKAKRKHRSDSDSG 658
Query: 137 SRERNSRYSDRD-------RDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRR---- 185
S +S + D S S SDS+ +R R R+K+ + ++KGRR
Sbjct: 659 SDSEDSVFETESGSSSVTGSDYSSGSSSDSSSSDSEEERRRRRKKKTQKKKKGRRHKKYS 838
Query: 186 SRSVSPRKQRRSEVKSSDVKERGKGSEMRK 215
S S S + S+ S D R K R+
Sbjct: 839 SSSESSDSESASDSDSDDKSSRRKRRHSRR 928
Score = 32.7 bits (73), Expect = 0.099
Identities = 40/136 (29%), Positives = 60/136 (43%), Gaps = 9/136 (6%)
Frame = +2
Query: 2 EEEKAAAYYDELTRKGEGAAKFKQGLGFSTSTSNDAV--PKPGSSLVSSSSFLSQFVKAS 59
+EEKA + + RK + S S S D+V + GSS V+ S + S S
Sbjct: 590 KEEKAKSSSKKAKRKHRSDSD-------SGSDSEDSVFETESGSSSVTGSDYSS----GS 736
Query: 60 SSSTTTTASTTAPSDSDRKSQLQSIQNKLKK-------KPTTESRVSEKTNRDYSSRDSD 112
SS S+++ S+ +R+ + + K KK ++ES SE + S S
Sbjct: 737 SSD-----SSSSDSEEERRRRRKKKTQKKKKGRRHKKYSSSSESSDSESASDSDSDDKSS 901
Query: 113 RRKRRSRSRSRERYRD 128
RRKRR R R +D
Sbjct: 902 RRKRRHSRRH*IRLKD 949
>BP034914
Length = 544
Score = 47.4 bits (111), Expect = 4e-06
Identities = 31/105 (29%), Positives = 45/105 (42%)
Frame = +3
Query: 68 STTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYR 127
S +A D++ + + + + P+ S S T D S DSDR RR R + R R
Sbjct: 3 SVSAKKMGDKRKKQRYVHDDT---PSPSSSSSSSTASD-SDSDSDRSSRRRREKERRRRS 170
Query: 128 DRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDR 172
D S+R S R + RDRDR + S +S D+
Sbjct: 171 DGGSKRERESSRRREKRKKRDRDRKKTKRHRHSDDESHSSEDEDK 305
Score = 43.1 bits (100), Expect = 7e-05
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 59 SSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRS 118
SSSS+++TAS + SDSDR S+ R EK R S S R + S
Sbjct: 75 SSSSSSSTASDS-DSDSDRSSR----------------RRREKERRRRSDGGSKRERESS 203
Query: 119 RSRSRERYRDRDSRRRSRSRERNSR-YSDRDRDRDR 153
R R + + RDRD ++ R R + +S D D+ R
Sbjct: 204 RRREKRKKRDRDRKKTKRHRHSDDESHSSEDEDKLR 311
Score = 39.7 bits (91), Expect = 8e-04
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = +3
Query: 131 SRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVS 190
S ++ + + RY D S S + SDSD D R R+R REK RRR
Sbjct: 9 SAKKMGDKRKKQRYVHDDTPSPSSSSSSSTASDSDSDSDRSSRRR---REKERRRRSDGG 179
Query: 191 PRKQRRSEVKSSDVKERGKGSEMRK 215
+++R S + K+R + + K
Sbjct: 180 SKRERESSRRREKRKKRDRDRKKTK 254
Score = 22.7 bits (47), Expect(2) = 7.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 326 SSTDSEPERENEKEVDNKKDLVSSLLSETVLARPKGSWRDRVRQ 369
S +D R EKE + D S E+ R K RDR R+
Sbjct: 114 SDSDRSSRRRREKERRRRSDGGSKRERESSRRREKRKKRDRDRK 245
Score = 21.9 bits (45), Expect(2) = 7.5
Identities = 9/28 (32%), Positives = 11/28 (39%)
Frame = +1
Query: 298 AVESKREDQIQAAHDEAMFGAPAPPPPT 325
A + K D H + PPPPT
Sbjct: 25 ATKGKSSDMFTTTHPLPLLHPLPPPPPT 108
>TC15182 similar to UP|Q9ZQW9 (Q9ZQW9) U2 snRNP auxiliary factor, small
subunit, partial (12%)
Length = 642
Score = 45.4 bits (106), Expect = 1e-05
Identities = 38/111 (34%), Positives = 51/111 (45%)
Frame = +2
Query: 107 SSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDV 166
+ R +DRR RSRSRSR S R+R+ E ++ R RD RS R
Sbjct: 35 NKRWNDRRGSRSRSRSR-------SPPRNRNYEERPQFGGRGGSGRRDFDRSHGR----- 178
Query: 167 DRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGK 217
GR R R R +G+ RS SP + RS V+ S + R K + + K
Sbjct: 179 -HGRKPRSRSPPRFRGK---RSRSPAGRDRSPVRESSAERRAKIEQWNREK 319
>AV780303
Length = 562
Score = 45.4 bits (106), Expect = 1e-05
Identities = 33/92 (35%), Positives = 44/92 (46%), Gaps = 14/92 (15%)
Frame = +3
Query: 109 RDSDRRKRRSRSRSRERYRDRDSRRRSRSRERN-SRYSDRDRDRDRDSGRSRS------- 160
RDS R R R RDRD R SR R+R+ R +++RDR+ G R+
Sbjct: 12 RDSVRSSRDRDGGRSSRDRDRDGERSSRDRDRDRGREKEKERDRETRYGTRRAQVTHEKD 191
Query: 161 ----RSDSDVDRGRD--RRKRERGREKGRRRS 186
R D + +R +D R + GRE GRR S
Sbjct: 192 DVIGRWDDETERKQDEGRHGDKSGRENGRRES 287
Score = 43.9 bits (102), Expect = 4e-05
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 146 DRDRD-----RDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVK 200
DRDRD RDRD GRS D D +R R R+RGREK + R R +R
Sbjct: 3 DRDRDSVRSSRDRDGGRSSRDRDRDGERSSRDRDRDRGREKEKERDRETRYGTRRAQVTH 182
Query: 201 SSD 203
D
Sbjct: 183 EKD 191
Score = 40.8 bits (94), Expect = 4e-04
Identities = 28/74 (37%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 104 RDYSSRDSDRRKR-RSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRS 162
RD DR K R +R +ER R+R+ R RSR R R+ DR+ +RD +S +R
Sbjct: 194 RDREMGRRDREKTGRGTTRRQEREREREERERSR-RSRSHSVRDRETERDFESRDARRFR 370
Query: 163 DSDVDRGRDRRKRE 176
D RG R R+
Sbjct: 371 DKKACRGA*GRSRK 412
Score = 37.0 bits (84), Expect = 0.005
Identities = 27/73 (36%), Positives = 34/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 97 RVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDS- 155
R EKT R + R R+R R RSR R R R R ER+ D R RD+ +
Sbjct: 215 RDREKTGRGTTRRQEREREREERERSR---RSRSHSVRDRETERDFESRDARRFRDKKAC 385
Query: 156 ----GRSRSRSDS 164
GRSR S++
Sbjct: 386 RGA*GRSRKGSEN 424
Score = 35.4 bits (80), Expect = 0.015
Identities = 29/94 (30%), Positives = 44/94 (45%), Gaps = 9/94 (9%)
Frame = +2
Query: 132 RRRSRSRERNSRYSDRDRDRDRDSG-RSRSRSDSDVDRGRDRRKRERGREKGRR-RSRSV 189
R+ + R+ S R+ RDR+ G R R ++ R ++R + RE+ RR RS SV
Sbjct: 137 RQGDKIRDAESTGDTREG*RDREMGRRDREKTGRGTTRRQEREREREERERSRRSRSHSV 316
Query: 190 SPRKQRRSEVKSSDVKE-------RGKGSEMRKG 216
R+ R + +S D + RG RKG
Sbjct: 317 RDRETER-DFESRDARRFRDKKACRGA*GRSRKG 415
>TC10006 similar to UP|P93396 (P93396) Transformer-SR ribonucleoprotein
(Fragment), partial (30%)
Length = 453
Score = 44.7 bits (104), Expect = 3e-05
Identities = 39/112 (34%), Positives = 50/112 (43%), Gaps = 1/112 (0%)
Frame = +3
Query: 59 SSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRS 118
SS S++ +T+ SDS + +N P S + SR + R
Sbjct: 54 SSHSSSLFPDSTSMSDSPVR------RNSRSPSPWRAQSRSRSRSPRPKSRSPRPKSRSP 215
Query: 119 RSRSRE-RYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRG 169
R++SR R R R R RSRSR S R R R R GRSRSRS D + G
Sbjct: 216 RAKSRSPRPRSRSPRPRSRSR---SLEKQRPRSRSRSRGRSRSRSPEDRNGG 362
Score = 41.2 bits (95), Expect = 3e-04
Identities = 35/104 (33%), Positives = 46/104 (43%)
Frame = +3
Query: 105 DYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDS 164
D +S +R SRS S R + R R R + R+ R R S R++SRS
Sbjct: 81 DSTSMSDSPVRRNSRSPSPWRAQSRSRSRSPRPKSRSPRPKSR-------SPRAKSRSPR 239
Query: 165 DVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERG 208
R R R R EK R RSRS R + RS +S + + G
Sbjct: 240 PRSRSPRPRSRSRSLEKQRPRSRS---RSRGRSRSRSPEDRNGG 362
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = +3
Query: 92 PTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRE------RYRDRDSRRRSRS---RERNS 142
P + S R+ S R + RSRSRS R + R R +SRS R R+
Sbjct: 78 PDSTSMSDSPVRRNSRSPSPWRAQSRSRSRSPRPKSRSPRPKSRSPRAKSRSPRPRSRSP 257
Query: 143 RYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKG 182
R R R ++ RSRSRS RGR R + R G
Sbjct: 258 RPRSRSRSLEKQRPRSRSRS-----RGRSRSRSPEDRNGG 362
>TC10598 weakly similar to GB|AAM78036.1|21928015|AY125526
At2g01100/F23H14.7 {Arabidopsis thaliana;}, partial
(33%)
Length = 902
Score = 42.7 bits (99), Expect = 1e-04
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Frame = +3
Query: 67 ASTTAPSDSD-RKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRR-KRRSRSRSRE 124
A+ A +D++ R+ +L++ ++K + +ES DY S D +R RRS + ++
Sbjct: 327 AAAKAKADAEARERKLKAAKHKKRADSDSES--------DYDSDDESKRTSRRSHRKHKK 482
Query: 125 RYR---DRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREK 181
R D + R+ S+ + ++S D D SR S+ +R R R+++++ R++
Sbjct: 483 RSHYDSDHEKRKEKLSKRKTKKWSSESSDFSGDESESR----SEEERRRKRKQKKKLRDQ 650
Query: 182 GRRRSRS--------VSPRKQ-----RRSEVKSSDVKERGKGSEMRK 215
R S VS RK+ R ++ SD + S +RK
Sbjct: 651 VSRSDSSDSDSSADEVSKRKRQHKRHRVTKSSGSDFSSDEENSPVRK 791
Score = 41.2 bits (95), Expect = 3e-04
Identities = 34/134 (25%), Positives = 57/134 (42%)
Frame = +3
Query: 74 DSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRR 133
DSD + + + + + KK ++ES + S + RRKR+ + + R++ DS
Sbjct: 495 DSDHEKRKEKLSKRKTKKWSSESSDFSGDESESRSEEERRRKRKQKKKLRDQVSRSDSSD 674
Query: 134 RSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRK 193
S + S+ R R R + S S SD + RKR G+ R R S
Sbjct: 675 SDSSADEVSK-RKRQHKRHRVTKSSGSDFSSD-EENSPVRKRSHGKHHKRHRHSESS--- 839
Query: 194 QRRSEVKSSDVKER 207
S++ S D+ +
Sbjct: 840 --ESDLSSDDIHHK 875
Score = 40.8 bits (94), Expect = 4e-04
Identities = 42/172 (24%), Positives = 76/172 (43%), Gaps = 9/172 (5%)
Frame = +3
Query: 56 VKASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTT---------ESRVSEKTNRDY 106
+KA+ + + + DSD +S+ S ++ K K + + ++S++ + +
Sbjct: 372 LKAAKHKKRADSDSESDYDSDDESKRTSRRSHRKHKKRSHYDSDHEKRKEKLSKRKTKKW 551
Query: 107 SSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDV 166
SS SD S SRS E RRR R +++ R D+ S S SDS
Sbjct: 552 SSESSDFSGDESESRSEEE------RRRKRKQKKKLR--------DQVSRSDSSDSDSSA 689
Query: 167 DRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKN 218
D +RKR+ R + + S S S+ ++S V++R G ++ ++
Sbjct: 690 DEV-SKRKRQHKRHRVTKSSGS-----DFSSDEENSPVRKRSHGKHHKRHRH 827
Score = 28.9 bits (63), Expect = 1.4
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Frame = +3
Query: 58 ASSSSTTTTASTTAPSDSDRKSQLQSIQNKLKKKPTTESRVSEKTNRDYSSRDSDRRKRR 117
+S SS + + + S+ +R+ + K KKK + S+ ++ D S+ + +RKR+
Sbjct: 552 SSESSDFSGDESESRSEEERRRK-----RKQKKKLRDQVSRSDSSDSDSSADEVSKRKRQ 716
Query: 118 SRSR--SRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKR 175
+ ++ D S + + S R R +S S SD D+ + RK
Sbjct: 717 HKRHRVTKSSGSDFSSDEENSPVRKRSHGKHHKRHRHSESSESDLSSD-DIHHKKSHRKH 893
Query: 176 ER 177
+
Sbjct: 894 HK 899
>BU494286
Length = 198
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/72 (37%), Positives = 33/72 (45%)
Frame = +3
Query: 123 RERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKG 182
R +D R R RER R DR R R R RSRS RDR++ + G +
Sbjct: 6 RHEEKDYGRDREGRERERRDRDRDRGRRRSRSRSRSRS---------RDRKEHDGGDYRK 158
Query: 183 RRRSRSVSPRKQ 194
R SVSP +Q
Sbjct: 159 RHARSSVSPIRQ 194
Score = 41.2 bits (95), Expect = 3e-04
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 149 RDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQR-RSEVKSSDVKER 207
R ++D GR R GR+R +R+R R++GRRRSRS S + R R E D ++R
Sbjct: 6 RHEEKDYGRDRE--------GRERERRDRDRDRGRRRSRSRSRSRSRDRKEHDGGDYRKR 161
Score = 41.2 bits (95), Expect = 3e-04
Identities = 23/49 (46%), Positives = 28/49 (56%)
Frame = +3
Query: 97 RVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYS 145
R E R+ RD DR +RRSRSRSR R RDR R+R++R S
Sbjct: 30 RDREGRERERRDRDRDRGRRRSRSRSRSRSRDRKEHDGGDYRKRHARSS 176
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 40.8 bits (94), Expect = 4e-04
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 116 RRSRSRSRERYR---DRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDR 172
RRSRSRS R R DR+ R R R + R S R DRD G R S G +
Sbjct: 674 RRSRSRSPPRRRGSMDRERRHRDRDYDSRGRRSSDRRSSDRDGGGRRRHGGSPAREGSEE 853
Query: 173 RK 174
R+
Sbjct: 854 RR 859
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/102 (33%), Positives = 46/102 (44%), Gaps = 7/102 (6%)
Frame = +2
Query: 115 KRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRD---RDRDSGRSRSRSDSDVDRGRD 171
+R+ S R R R RRSRSR R DR+ RDRD SR R SD
Sbjct: 620 RRKLFSSHSFRIRSRSPVRRSRSRSPPRRRGSMDRERRHRDRDYD-SRGRRSSD------ 778
Query: 172 RRKRERGREKGRRRSRSVSPRK----QRRSEVKSSDVKERGK 209
+R R+ G RR SP + +RR+ ++ + + GK
Sbjct: 779 --RRSSDRDGGGRRRHGGSPAREGSEERRARIEQWNREREGK 898
>TC11195 UP|Q9FJH4 (Q9FJH4) Similarity to ring finger protein, partial (7%)
Length = 594
Score = 40.4 bits (93), Expect = 5e-04
Identities = 35/95 (36%), Positives = 50/95 (51%), Gaps = 8/95 (8%)
Frame = -1
Query: 99 SEKTNRDYSSRDSDRRKR-RSRSRSRERYRDRDSRR--RSRSRERNSRYSDRDRD--RDR 153
S T ++ +S +R+R RS R +R R RR R R++ R R++ R R R R
Sbjct: 564 SPPTAASPNTEESPKRRRFRSAPPRRSEHRSRVPRRGPRRRNQTRTRRFARRGRRGFRIR 385
Query: 154 DSGRSRS--RSDSDVDRGRDRRKRER-GREKGRRR 185
GR+R R ++RGR RR+R R G E+G R
Sbjct: 384 QRGRNRRCRRQGRTLNRGRVRRRRSR*GIEEGDHR 280
>TC15305 similar to GB|CAB42557.1|4775270|ATH131214 SF2/ASF-like splicing
modulator Srp30 {Arabidopsis thaliana;} , partial (20%)
Length = 576
Score = 40.0 bits (92), Expect = 6e-04
Identities = 27/63 (42%), Positives = 32/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 110 DSDRRKRRSRSRSRERYRDRDSRR---RSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDV 166
+S R + SRSRS +R R R R RSRSR R++ R R R RSRS S V
Sbjct: 97 ESRRSRSLSRSRSPKRVRSRSLDRSVSRSRSRSRSASPIKSSRPRSRSKSRSRSASPPQV 276
Query: 167 DRG 169
G
Sbjct: 277 PSG 285
Score = 37.7 bits (86), Expect = 0.003
Identities = 28/68 (41%), Positives = 33/68 (48%)
Frame = +1
Query: 124 ERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREKGR 183
+++ R SR SRSR S R R DR RSRSRS R K R R + +
Sbjct: 88 KKFESRRSRSLSRSR---SPKRVRSRSLDRSVSRSRSRS-----RSASPIKSSRPRSRSK 243
Query: 184 RRSRSVSP 191
RSRS SP
Sbjct: 244 SRSRSASP 267
Score = 35.0 bits (79), Expect = 0.020
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 95 ESRVSEKTNRDYS-----SRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERN 141
ESR S +R S SR DR RSRSRSR + SR RSRS+ R+
Sbjct: 97 ESRRSRSLSRSRSPKRVRSRSLDRSVSRSRSRSRSASPIKSSRPRSRSKSRS 252
Score = 30.0 bits (66), Expect = 0.64
Identities = 19/48 (39%), Positives = 24/48 (49%)
Frame = +1
Query: 154 DSGRSRSRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKS 201
+S RSRS S S + R +R + R RSRS SP K R +S
Sbjct: 97 ESRRSRSLSRSRSPKRVRSRSLDRSVSRSRSRSRSASPIKSSRPRSRS 240
Score = 28.5 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 145 SDRDRDRDRDSGRSRSRSDSDVDRGRD 171
+DRDRD D D G ++D+DR RD
Sbjct: 260 ADRDRDFDLDLGLEDLIGEADLDRDRD 180
>AU088817
Length = 191
Score = 39.7 bits (91), Expect = 8e-04
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1
Query: 109 RDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSR 159
R+ +R + R R R RER R+R+ R R R RER R+R+R+R S SR
Sbjct: 7 RERERERERERERERERERERE-RERERERERERX---RERERERXSFVSR 147
Score = 28.9 bits (63), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 89 KKKPTTESRVSEKTNRDYSSRDSDRRKRRSRSRSRERYRDRDS 131
+++ R E+ R+ +R + R R R RER R+R S
Sbjct: 7 RERERERERERERERERERERERERERERERERXRERERERXS 135
>TC18242 weakly similar to UP|O70495 (O70495) Plenty-of-prolines-101,
partial (5%)
Length = 490
Score = 39.7 bits (91), Expect = 8e-04
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 113 RRKRRSRSRSRE---RYRDRDSRRRSRSRERN---SRYSDRDRDRDRDSGRSRSRSDSDV 166
R + RSRS SR RYR S RSRS R+ SR R RSRSRS S
Sbjct: 6 RYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPY 185
Query: 167 DRGRDRRKRER 177
R +R R R
Sbjct: 186 SRSPRKRNRSR 218
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 113 RRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDR---DRDRDRDSGRSRSRSDSDVDRG 169
R + RS SRS R R R SR SRSR YS R RSRSRS S
Sbjct: 12 RHRSRSNSRSPPR-RYRRSRSPSRSRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYS 188
Query: 170 RDRRKRERGR 179
R RKR R R
Sbjct: 189 RSPRKRNRSR 218
Score = 36.6 bits (83), Expect = 0.007
Identities = 30/76 (39%), Positives = 33/76 (42%)
Frame = +3
Query: 122 SRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVDRGRDRRKRERGREK 181
SR R+R R + R R R SR R R R SRS S S R R R R
Sbjct: 3 SRYRHRSRSNSRSPPRRYRRSRSPSRSRSSRRHYSSSRSGSPSP--SRTHSRSRSRSRS- 173
Query: 182 GRRRSRSVSPRKQRRS 197
R S SPRK+ RS
Sbjct: 174 --RSPYSRSPRKRNRS 215
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 99 SEKTNRDYSS-RDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRY 144
S + R YSS R R+ SRSR R R R RS + SR+
Sbjct: 81 SRSSRRHYSSSRSGSPSPSRTHSRSRSRSRSRSPYSRSPRKRNRSRH 221
>BP040010
Length = 567
Score = 39.3 bits (90), Expect = 0.001
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +2
Query: 103 NRDYSSRDSDRRKRRS---RSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSR 159
N S RDSD + R S R S +RYR RD ++ RER DRDRDR+R+ G
Sbjct: 29 NPSMSHRDSDSKLRHSKFDREPSPKRYR-RDGKQ---DRER-----DRDRDRERERGS-- 175
Query: 160 SRSDSDVDRGRDRRKRERGREKGRRRSRSVSPRKQR 195
+RGRDR + G ++ + R QR
Sbjct: 176 -------ERGRDRDRVTTNGGGGAGGDQNPTDRDQR 262
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +2
Query: 90 KKPTTESRVSEKTNRD--YSSRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDR 147
K P+ R S+ R + S +R RR + RER RDRD R R R ER R
Sbjct: 26 KNPSMSHRDSDSKLRHSKFDREPSPKRYRRDGKQDRERDRDRD-RERERGSERG-----R 187
Query: 148 DRDRDRDSGRSRSRSDSDVDRGRDRR 173
DRDR +G + D + RD+R
Sbjct: 188 DRDRVTTNGGGGAGGDQN-PTDRDQR 262
>TC14532 similar to UP|Q9FYA8 (Q9FYA8) SC35-like splicing factor SCL30a, 30a
kD, partial (71%)
Length = 1073
Score = 39.3 bits (90), Expect = 0.001
Identities = 38/141 (26%), Positives = 58/141 (40%)
Frame = +3
Query: 108 SRDSDRRKRRSRSRSRERYRDRDSRRRSRSRERNSRYSDRDRDRDRDSGRSRSRSDSDVD 167
+ ++ ++ R R R R R D RR R+ RYS R R RSR S
Sbjct: 396 AEENRKKPTEMRHRERSRGRSYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYY-SPPP 572
Query: 168 RGRDRRKRERGREKGRRRSRSVSPRKQRRSEVKSSDVKERGKGSEMRKGKNVGVDYAKLI 227
+ RD R E+ R RS +PR + RS +S G S R V V
Sbjct: 573 KRRDSRS-VSPEERRYSRERSYTPRSRERSYSRSPPY-NGGSRSRSRSPAKVAVHSRSPS 746
Query: 228 HGYDNMAPAERVKAKMKLQLS 248
+ ++ + R+++ + +LS
Sbjct: 747 PIHGDVRESARIRSPSQ*ELS 809
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.123 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,911,710
Number of Sequences: 28460
Number of extensions: 71673
Number of successful extensions: 2391
Number of sequences better than 10.0: 297
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of query: 369
length of database: 4,897,600
effective HSP length: 92
effective length of query: 277
effective length of database: 2,279,280
effective search space: 631360560
effective search space used: 631360560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146914.1