BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.6 - phase: 0
(385 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 221 1e-58
BP075943 161 2e-40
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 131 2e-31
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 126 7e-30
AV424544 96 1e-20
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 86 1e-17
BP084332 82 2e-16
BP043850 81 3e-16
BP066094 71 3e-13
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 65 2e-11
BP057233 64 4e-11
AV766665 55 2e-08
AV411594 54 2e-08
BP084259 48 2e-06
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 32 6e-05
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 43 8e-05
BP052124 43 1e-04
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 43 1e-04
AV779990 33 0.002
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 37 0.004
>AV780009
Length = 529
Score = 221 bits (564), Expect = 1e-58
Identities = 105/163 (64%), Positives = 125/163 (76%)
Frame = -1
Query: 201 KAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSW 260
+AA +VLRY+K +P GLFF DS L L YSD+DW GCPDTRRS+TGY F+G SL+SW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 261 KSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASN 320
++KKQ TVSRSSSEAEYRALAA CE+QWL YL L + L CD+QSALHIA N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 321 PVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTK 363
P FHERTKH+++DCHVVR KLQ+GL+ L PIS+ Q+ADI TK
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP075943
Length = 547
Score = 161 bits (407), Expect = 2e-40
Identities = 83/168 (49%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = -3
Query: 59 TTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGIT 118
++ + T LL+YVDD++LAGND+ EIQL+K+SLH+ F IKDLG K+FLGLE+A S GI
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 119 ICQQQYCLDLLNKTGTLGCKPSSIPMDP-SQRLHRDDSEPYVDASEYRALVGKLLYLTST 177
+ Q++Y L L++ +G G +P SQ L + P D YR +VG+LLYL +T
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 178 RPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSS 225
RPDI+F V QL QFL +PT H + L+YL SPG+GLF+P SS
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 131 bits (329), Expect = 2e-31
Identities = 65/99 (65%), Positives = 73/99 (73%)
Frame = +1
Query: 285 CELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSG 344
CEL WL Y+L DL V L CDSQSA HIA+N VFHERTKHLDIDCHVVREKLQ+
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 345 LMELFPISSQEQIADILTKALHPASFNHLIAKLSLLNIY 383
L L PISS +Q ADILTK L F+HL++KL +LNIY
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIY 297
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 126 bits (316), Expect = 7e-30
Identities = 58/98 (59%), Positives = 73/98 (74%)
Frame = +1
Query: 288 QWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLME 347
QWL YLL DL V + + CD+ SA HIA+NPVFHERTKH++IDCH+VRE++Q GL+
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 348 LFPISSQEQIADILTKALHPASFNHLIAKLSLLNIYQP 385
L PISS E +ADI TKAL P +F+ + AKL L+NI P
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSP 294
>AV424544
Length = 276
Score = 95.9 bits (237), Expect = 1e-20
Identities = 49/90 (54%), Positives = 64/90 (70%)
Frame = +3
Query: 35 KLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVF 94
KLS +L GY D +LF K ++ TV+LVYVDD++LAGNDL+EIQ +KN L F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 95 GIKDLGILKFFLGLEVAHSAKGITICQQQY 124
IKDLG LK+FLGLEVA S+ G+ + Q++Y
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 85.9 bits (211), Expect = 1e-17
Identities = 35/81 (43%), Positives = 56/81 (68%)
Frame = +3
Query: 285 CELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSG 344
CE WL Y L DL + + + CD++SALH+A+N VFH+RT++++IDCH+V K+ G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 345 LMELFPISSQEQIADILTKAL 365
++ L + S +Q+AD+ TK +
Sbjct: 198 ILHLLHVPSSDQVADVFTKTI 260
>BP084332
Length = 368
Score = 81.6 bits (200), Expect = 2e-16
Identities = 37/113 (32%), Positives = 68/113 (59%)
Frame = +2
Query: 265 QQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFH 324
Q T++ S++EAEY + A + ++ W+ + L D + S +P + CD+ +A+ ++ NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIP-IYCDNTAAISLSKNPILH 208
Query: 325 ERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFNHLIAKL 377
R KH+++ H +R+ +Q G++ L + + Q ADI TK L FN ++ L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>BP043850
Length = 515
Score = 80.9 bits (198), Expect = 3e-16
Identities = 42/95 (44%), Positives = 62/95 (65%)
Frame = -1
Query: 286 ELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGL 345
E+ WL LL++L S+ L D+ SA+ IA+NPV+HE T+H+++DCH VRE +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 346 MELFPISSQEQIADILTKALHPASFNHLIAKLSLL 380
+ L +S+ QIADILTK+L N L++KL L+
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLV 228
>BP066094
Length = 532
Score = 71.2 bits (173), Expect = 3e-13
Identities = 37/95 (38%), Positives = 53/95 (54%)
Frame = +2
Query: 15 VCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDIV 74
+ KL KSLYGLKQA R WYE+LS FL+ D TLF K I ++ +YVDDI+
Sbjct: 248 IFKLKKSLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDII 427
Query: 75 LAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLE 109
+ + + F ++ +G LK+FLG++
Sbjct: 428 FGSANPSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 64.7 bits (156), Expect = 2e-11
Identities = 44/148 (29%), Positives = 73/148 (48%), Gaps = 13/148 (8%)
Frame = +2
Query: 39 FLISAGYASVTSDPTLFIKR-TTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIK 97
F++S GY ++SD + KR + +LL+YVDD+++ G + D +Q +K L F +K
Sbjct: 11 FIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMK 190
Query: 98 DLGILKFFLGLEVAHSAKG--ITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDS 155
DLG LG+++ K I + Q+ Y +L + C P S P+ + +L S
Sbjct: 191 DLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKL----S 358
Query: 156 EPYVDASE----------YRALVGKLLY 173
+ +SE Y + VG L+Y
Sbjct: 359 SSMIPSSEAERMEMSRVPYASAVGSLMY 442
>BP057233
Length = 473
Score = 63.9 bits (154), Expect = 4e-11
Identities = 31/77 (40%), Positives = 49/77 (63%)
Frame = -2
Query: 305 PALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKA 364
P L CD+ SA +ASNPV H R+KH++ID H +R+++ + + + + +QIAD LTK
Sbjct: 451 PILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKP 272
Query: 365 LHPASFNHLIAKLSLLN 381
L F+ L KL +++
Sbjct: 271 LSHTRFSQLRDKLGVIH 221
>AV766665
Length = 601
Score = 55.5 bits (132), Expect = 2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +3
Query: 205 KVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKK 264
++ YLK + G F ++ + G++ AD+ G R S GY F+ +LV+W+SK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 265 QQTVSRSSSEAEYRA 279
Q ++RSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
Score = 32.0 bits (71), Expect = 0.18
Identities = 20/56 (35%), Positives = 31/56 (54%)
Frame = +1
Query: 57 KRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAH 112
+R T T + L VYVD + + G+D E Q+++ L F DL LK+ +EV +
Sbjct: 88 QRQTHTSSHLCVYVDHMTIVGDDEVEKQILREKLAPQF---DLKKLKYISVIEVVY 246
>AV411594
Length = 244
Score = 53.9 bits (128), Expect(2) = 2e-08
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = +2
Query: 105 FLGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEY 164
FL +A S KGI + +++Y L LL+ T +GCKP P+DPS +L+ D E D + Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 165 RALVG 169
+G
Sbjct: 230 IRFIG 244
Score = 21.2 bits (43), Expect(2) = 2e-08
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = +3
Query: 94 FGIKDLGILKFFLGLE 109
F +K L +K+FLGLE
Sbjct: 18 FKLKVLDDMKYFLGLE 65
>BP084259
Length = 385
Score = 48.1 bits (113), Expect = 2e-06
Identities = 20/58 (34%), Positives = 32/58 (54%)
Frame = -3
Query: 278 RALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCH 335
R + + E WL LL +L + KVP + ++ +A ++ N VFH KH+ +DCH
Sbjct: 179 RTIGSTAAEFLWLQQLLKELQFSLPKVPCIFSNNINATYVCLNLVFHSHMKHVALDCH 6
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment),
partial (20%)
Length = 479
Score = 32.3 bits (72), Expect(2) = 6e-05
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 289 WLVYLLTDLNVTCSKVPALVCDSQSALHIASNP 321
W+ +L+++ + L CD+Q+ALHI+SNP
Sbjct: 3 WVGQILSEMGIERISPMPLWCDNQAALHISSNP 101
Score = 30.4 bits (67), Expect(2) = 6e-05
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +2
Query: 317 IASNPVFHERTKHLDIDCH 335
I S HERTKH+++DCH
Sbjct: 92 IQSQFSLHERTKHIEVDCH 148
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 43.1 bits (100), Expect = 8e-05
Identities = 30/108 (27%), Positives = 55/108 (50%)
Frame = +3
Query: 258 VSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHI 317
V+W S+ Q+ V+ S++EAE+ A A EL W+ L + + + +++ +
Sbjct: 27 VAWPSRLQKCVALSTAEAEFIAATEACHELLWMKNFLQNAWFHSHPILCCIVITKALFTL 206
Query: 318 ASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKAL 365
A +F + L +R+ L S L+EL I + + AD++TK+L
Sbjct: 207 ARILLFIQDPSTLMFVIIGLRDVLNSKLLELEKIHTDDDGADMMTKSL 350
>BP052124
Length = 467
Score = 42.7 bits (99), Expect = 1e-04
Identities = 18/43 (41%), Positives = 27/43 (61%)
Frame = -2
Query: 309 CDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPI 351
CD+ SAL +A P+ H R H ++DC +EKL +GL+ + I
Sbjct: 451 CDNNSALTLAPRPI*HSRPVHFEVDCPYPKEKLGTGLITAYVI 323
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 42.7 bits (99), Expect = 1e-04
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Frame = -1
Query: 121 QQQYCLDLLNKTGTLGCKPSSIPMDPSQ-RLHRDDSEPYVDASEYRALVGKLLYLTSTRP 179
Q+ Y D+L K K S + + R + VD++ Y++L+G + YL + R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 180 DISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGC 239
DI V +F++ P H + A + LRY+K + G+F + + L
Sbjct: 559 DIVCGVGLRSRFME-P*DCH*QGAQRSLRYIKGTLKDGIFMLVITM*NSL---------- 413
Query: 240 PDTRR-SITGYCFFIGKSLVSWKS 262
DT+ + GY F +G+ +SW S
Sbjct: 412 -DTQIVTRPGYAFHLGRGAISWSS 344
>AV779990
Length = 542
Score = 33.1 bits (74), Expect(2) = 0.002
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 310 DSQSALHIASNPVFHERTKH 329
D+ +AL I+SNP+ HERTKH
Sbjct: 312 DNHAALDISSNPISHERTKH 371
Score = 24.3 bits (51), Expect(2) = 0.002
Identities = 7/18 (38%), Positives = 14/18 (76%)
Frame = +1
Query: 329 HLDIDCHVVREKLQSGLM 346
++++DCH + EKL+ L+
Sbjct: 367 NIEVDCHFICEKLEQNLI 420
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 37.4 bits (85), Expect = 0.004
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -1
Query: 253 IGKSLVSWKSKKQQTVSRSSSEAEYRALAAAT 284
+ +L+SWKSK+ V+RS +EAE+R +A AT
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMATAT 422
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,261,719
Number of Sequences: 28460
Number of extensions: 105655
Number of successful extensions: 512
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of query: 385
length of database: 4,897,600
effective HSP length: 92
effective length of query: 293
effective length of database: 2,279,280
effective search space: 667829040
effective search space used: 667829040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146910.6