TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146910.5 - phase: 0 /pseudo
         (470 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  ...    41  5e-04
BP053034                                                               40  0.001
TC14012 similar to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2  ...    33  0.13
TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcos...    32  0.22
TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%)    32  0.22
AV408622                                                               30  0.65
AV410093                                                               30  0.65
TC7922 UP|Q84V95 (Q84V95) Pyruvate decarboxylase 1  , partial (81%)    30  0.85
AU088772                                                               29  1.4
TC13121 similar to UP|SYFB_ARATH (Q9SGE9) Probable phenylalanyl-...    29  1.9
AV780365                                                               28  3.2
TC17771                                                                27  5.5
TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete          27  7.2
BP063932                                                               27  9.4
TC13080                                                                27  9.4

>TC10886 similar to UP|Q8GSM8 (Q8GSM8) Squalene monooxygenase 1  , partial
           (27%)
          Length = 1135

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 23/59 (38%), Positives = 33/59 (54%)
 Frame = +1

Query: 42  STTQNDTNTTTSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIVIE 100
           +TTQ   N TT+    R    + ++     D +V+GAGV G A+A  L   GR+V+VIE
Sbjct: 700 TTTQTTENITTASGECRSFNRNANI-----DVIVVGAGVAGAALAHTLGKDGRQVLVIE 861


>BP053034 
          Length = 492

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 27/79 (34%), Positives = 42/79 (52%), Gaps = 3/79 (3%)
 Frame = +2

Query: 57  SRETTTSYSVPRER---VDCVVIGAGVVGIAVARALALKGREVIVIESAPSFGTGTSSRN 113
           SRET  S  +   +   +D +VIG G  G   A     +G  V ++E    F +GTSSR+
Sbjct: 218 SRETQQSALMAAGKGNPLDVLVIGGGATGSGAALDAVTRGLRVGLVERE-DFASGTSSRS 394

Query: 114 SEVVHAGIYYPHHSLKAIF 132
           ++++H G+ Y     KA+F
Sbjct: 395 TKLLHGGVRYLE---KAVF 442


>TC14012 similar to UP|Q8GSM9 (Q8GSM9) Squalene monooxygenase 2  , partial
           (13%)
          Length = 480

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 15/29 (51%), Positives = 19/29 (64%)
 Frame = +2

Query: 72  DCVVIGAGVVGIAVARALALKGREVIVIE 100
           D +++GAGV G A+A  L   GR V VIE
Sbjct: 311 DVIIVGAGVAGSALAHTLGKDGRRVHVIE 397


>TC14964 weakly similar to UP|SOX_ARATH (Q9SJA7) Potential sarcosine oxidase
            , partial (33%)
          Length = 612

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 18/62 (29%), Positives = 31/62 (49%)
 Frame = +3

Query: 65  SVPRERVDCVVIGAGVVGIAVARALALKGREVIVIESAPSFGTGTSSRNSEVVHAGIYYP 124
           ++   + D ++IGAGV+G A A   A +G + +++E    F     S + E     + YP
Sbjct: 21  TMDNSQFDVIIIGAGVIGSATAYQAAKRGLKTLLLEQF-DFLHHRGSSHGESRTIRVTYP 197

Query: 125 HH 126
            H
Sbjct: 198 QH 203


>TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%)
          Length = 539

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 28  KWNNPFNNWVRNIRSTTQNDTNTTTSYPVSRETTTSYSVPRER 70
           +WN    N+   I +TT N T TTT++ ++  TTT   V R R
Sbjct: 485 QWNAYSPNFNVTI*TTTVNQTRTTTTFIITTGTTTIIEVNRHR 357


>AV408622 
          Length = 415

 Score = 30.4 bits (67), Expect = 0.65
 Identities = 11/19 (57%), Positives = 16/19 (83%)
 Frame = +3

Query: 71  VDCVVIGAGVVGIAVARAL 89
           VDCVV+GAG+ G+ +A+ L
Sbjct: 357 VDCVVVGAGISGLCIAQTL 413


>AV410093 
          Length = 428

 Score = 30.4 bits (67), Expect = 0.65
 Identities = 17/65 (26%), Positives = 28/65 (42%)
 Frame = +2

Query: 39  NIRSTTQNDTNTTTSYPVSRETTTSYSVPRERVDCVVIGAGVVGIAVARALALKGREVIV 98
           +I++ T      + +   S   +   S+   ++   VIG G  G + A ALA  G E  +
Sbjct: 89  SIQTPTSKPKPRSLTISASNSNSAHSSIAGRKLRAAVIGGGPAGASAAEALATGGIETFL 268

Query: 99  IESAP 103
            E  P
Sbjct: 269 FERNP 283


>TC7922 UP|Q84V95 (Q84V95) Pyruvate decarboxylase 1  , partial (81%)
          Length = 1547

 Score = 30.0 bits (66), Expect = 0.85
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 125 HHSLKAIFCVKGREMLYEYCAKHDIPHEQTGKLIVATRSSEIPKLSVILNHGIQNGVDGL 184
           HHSLKA   +K  ++L E    + +  +  G ++V  R +       +L     N V+  
Sbjct: 614 HHSLKASNSLKTPQLLCEIRQPNGMMKDPAGSIVVGVRPTNDANEGQVLTVSSSNSVEHA 435

Query: 185 KMMDG 189
           +  DG
Sbjct: 434 ESTDG 420


>AU088772 
          Length = 422

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 304 AKRFTGLENKVIPPAYYARGCYFTLSNTKASPFRHLI 340
           +KR +      +PP+    GCY  LS  KA   RH +
Sbjct: 175 SKRGSKAGGSAVPPSCQVEGCYADLSGAKAXHRRHKV 285


>TC13121 similar to UP|SYFB_ARATH (Q9SGE9) Probable phenylalanyl-tRNA
           synthetase beta chain  (Phenylalanine--tRNA ligase beta
           chain) (PheRS) , partial (37%)
          Length = 721

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/54 (29%), Positives = 30/54 (54%)
 Frame = -2

Query: 196 EPELQCVKAILSPLSGIVDSHSLMLSLVLHIDRNINPMLVQGEAENHGATFTYN 249
           E  LQC++ + S  +    + ++++ LVL +D+ +   L++  A  HG   TYN
Sbjct: 573 ERALQCIQIMSSNGNKSSSTANVLMKLVLEVDKAVVSCLIKSYAS*HG---TYN 421


>AV780365 
          Length = 551

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 11/35 (31%), Positives = 21/35 (59%)
 Frame = +1

Query: 9   LEQFKSSSSSTRTRDHVHMKWNNPFNNWVRNIRST 43
           +++ KSSS+  +T+ H    WN  +  WV  +R++
Sbjct: 358 IQRMKSSSAKEQTKSHDITSWN*EYIRWVGWLRAS 462


>TC17771 
          Length = 529

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
 Frame = -2

Query: 31  NPFNNWVR--NIRSTTQNDTNTTTSYPVSRETTTSYSVPRERVDCV 74
           N +N+W     + S+T+NDTN   S  V      + ++    VDCV
Sbjct: 468 NSYNSWYN*CQVVSSTRNDTNKIWSCHVQPSHDPTSALASLEVDCV 331


>TC14500 UP|Q9S7B1 (Q9S7B1) Nodule INCEPTION protein, complete
          Length = 3001

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 11/38 (28%), Positives = 17/38 (43%)
 Frame = -2

Query: 7    QTLEQFKSSSSSTRTRDHVHMKWNNPFNNWVRNIRSTT 44
            Q L      +     +D+    W N   NW RN++S+T
Sbjct: 2184 QLLHDLHGHTRCCSDQDNYAFSWMNQNGNWQRNLKSST 2071


>BP063932 
          Length = 605

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 5   TIQTLEQFKSSSS---STRTRDHVHMKWNN 31
           TI+T+   K S S    T+T +H H  WNN
Sbjct: 472 TIRTVPGLKKSHSVHKHTKTAEHGHTPWNN 383


>TC13080 
          Length = 417

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 12/32 (37%), Positives = 19/32 (58%)
 Frame = +3

Query: 115 EVVHAGIYYPHHSLKAIFCVKGREMLYEYCAK 146
           EVV+  + Y +  + AIFC    ++LY +C K
Sbjct: 276 EVVNIFLVYLNCIVAAIFCSVNSDLLYLWCTK 371


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.317    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,225,925
Number of Sequences: 28460
Number of extensions: 114390
Number of successful extensions: 620
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of query: 470
length of database: 4,897,600
effective HSP length: 94
effective length of query: 376
effective length of database: 2,222,360
effective search space: 835607360
effective search space used: 835607360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)