BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146910.4 + phase: 0
(321 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP047366 143 3e-35
BP037350 130 2e-31
AV776064 76 5e-27
BP080797 86 8e-18
TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor ... 79 1e-15
TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription facto... 46 7e-06
TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator ... 45 1e-05
TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 44 4e-05
TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 43 6e-05
BF177802 42 2e-04
TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor ... 42 2e-04
TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor,... 41 3e-04
TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ... 40 5e-04
AV426757 38 0.002
TC18406 similar to UP|O23726 (O23726) B-Zip DNA binding protein,... 38 0.003
TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ... 32 0.19
BP038346 28 2.7
AW720417 28 2.7
TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, ... 28 2.7
BP085186 27 3.5
>BP047366
Length = 535
Score = 143 bits (361), Expect = 3e-35
Identities = 71/84 (84%), Positives = 82/84 (97%)
Frame = -3
Query: 236 RKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQN 295
RKRVASGIVVEKTVERRQKRMIKNRESAARSRAR+QAYTQELE+KVSRLEEENERLRRQ+
Sbjct: 530 RKRVASGIVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRRQH 351
Query: 296 EMEKEVPTAPPPEPKNQLRRTNSA 319
E+E+ +P+ PPP+PK+QLRRT+S+
Sbjct: 350 EIEQVLPSVPPPDPKHQLRRTSSS 279
>BP037350
Length = 495
Score = 130 bits (328), Expect = 2e-31
Identities = 70/99 (70%), Positives = 78/99 (78%)
Frame = -2
Query: 221 PSSLMGTLSDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELK 280
P LMGT+SD Q GRKR A +V KTVERRQKRMIKNRESAARSRAR+ AYT EL K
Sbjct: 464 PPPLMGTVSDMQIPGRKRSAPEDMVGKTVERRQKRMIKNRESAARSRARKHAYTNEL*NK 285
Query: 281 VSRLEEENERLRRQNEMEKEVPTAPPPEPKNQLRRTNSA 319
VSRLEEENERLR++ E+E+ +P PPPEPK QLRR SA
Sbjct: 284 VSRLEEENERLRKRKELEQMLPCTPPPEPKYQLRRIASA 168
>AV776064
Length = 418
Score = 76.3 bits (186), Expect(2) = 5e-27
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = -1
Query: 229 SDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQ 275
SDTQT GRKR A +VEKTVERRQKRMIKNRESAARSRAR+QAYTQ
Sbjct: 418 SDTQTPGRKRSAPEDMVEKTVERRQKRMIKNRESAARSRARKQAYTQ 278
Score = 61.2 bits (147), Expect(2) = 5e-27
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = -2
Query: 276 ELELKVSRLEEENERLRRQNEMEKEVPTAPPPEPKNQLRRTNSA 319
ELE KVSRLEEENER R++ E+E+ +P PPPEPK QLRR SA
Sbjct: 276 ELENKVSRLEEENERPRKRKELEQMLPCTPPPEPKYQLRRIASA 145
>BP080797
Length = 498
Score = 85.9 bits (211), Expect = 8e-18
Identities = 46/87 (52%), Positives = 61/87 (69%)
Frame = -2
Query: 235 GRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQ 294
GRKR EK +ERR +R IKNRESAARSRAR+QAY EL KV+RLE++N +L+++
Sbjct: 491 GRKRDGPD-AYEKALERRLRRKIKNRESAARSRARKQAYHNELVSKVTRLEQDNIKLKKE 315
Query: 295 NEMEKEVPTAPPPEPKNQLRRTNSASF 321
+ E+ +P P P+ QLRR +SA F
Sbjct: 314 KDFEQSLPPEPSRGPRYQLRRISSALF 234
>TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor 6, partial
(64%)
Length = 944
Score = 78.6 bits (192), Expect = 1e-15
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +3
Query: 235 GRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQ 294
GRK A VEK +ERRQ+RMIKNRESAARSRAR+QAYT ELE +V++L+EENE L+++
Sbjct: 747 GRKTGA----VEKVIERRQRRMIKNRESAARSRARKQAYTMELEQEVAKLKEENEELQKK 914
Query: 295 NE 296
E
Sbjct: 915 QE 920
Score = 57.4 bits (137), Expect = 3e-09
Identities = 33/65 (50%), Positives = 41/65 (62%)
Frame = +3
Query: 82 LGGFNSQESLTLSGDLSKKTVDEVWKDMQGKKRGVDRDRKSREKQQTLGEMTLEDFLVKA 141
+G Q SLTL LS KTVD+VWKD+ + + +Q TLGEMTLE+FLV+A
Sbjct: 6 VGHLQRQGSLTLPRTLSHKTVDQVWKDIS---KDYGPSLVAPPRQPTLGEMTLEEFLVRA 176
Query: 142 GVVGE 146
GVV E
Sbjct: 177 GVVRE 191
>TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (62%)
Length = 1585
Score = 46.2 bits (108), Expect = 7e-06
Identities = 20/42 (47%), Positives = 33/42 (77%)
Frame = +3
Query: 250 ERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERL 291
+R++KRMI NRESA RSR R+Q + +L +V++L +EN+++
Sbjct: 696 QRKRKRMISNRESARRSRMRKQKHLDDLASQVTQLRKENQQI 821
>TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator protein
(RITA-1 protein), partial (21%)
Length = 603
Score = 45.4 bits (106), Expect = 1e-05
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +1
Query: 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQ 294
+R +R + NRESA RSR R+QA+ ELE +V +L+ EN L +Q
Sbjct: 466 KRLRRKVSNRESARRSRRRKQAHLAELETQVEKLKLENATLYKQ 597
>TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(52%)
Length = 510
Score = 43.9 bits (102), Expect = 4e-05
Identities = 33/101 (32%), Positives = 47/101 (45%)
Frame = +3
Query: 191 KHTMPGFAAVHAIQQPFQVAGNQALDAAISPSSLMGTLSDTQTLGRKRVASGIVVEKTVE 250
++ +P F Q FQV + IS +S + Q G++ E
Sbjct: 93 QNNIPTFQFQRFSNQLFQVPDFSPQSSCISSNSTSDEADEQQ--------QGLINE---- 236
Query: 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERL 291
R+ +RMI NRESA RSR R+Q + EL +V L EN +L
Sbjct: 237 RKHRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQL 359
>TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(39%)
Length = 484
Score = 43.1 bits (100), Expect = 6e-05
Identities = 31/87 (35%), Positives = 41/87 (46%)
Frame = +1
Query: 205 QPFQVAGNQALDAAISPSSLMGTLSDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAA 264
Q FQ Q + IS +S D Q +++ ER+ +RMI NRESA
Sbjct: 196 QAFQDFSPQNSSSCISSNSTSDEAEDQQQ------QQSLIIN---ERKHRRMISNRESAR 348
Query: 265 RSRARRQAYTQELELKVSRLEEENERL 291
RSR R+Q + EL V L EN +L
Sbjct: 349 RSRMRKQKHLDELWSMVVCLRNENHQL 429
>BF177802
Length = 481
Score = 41.6 bits (96), Expect = 2e-04
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +1
Query: 223 SLMGTLSDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAY 273
S T D + +++A V ++R+KR++KNRESA RSRAR+QAY
Sbjct: 325 SSFNTSFDASSSSGEKIAQQDRVYAFSDQRRKRILKNRESALRSRARKQAY 477
>TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor BZI-4,
partial (25%)
Length = 511
Score = 41.6 bits (96), Expect = 2e-04
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +2
Query: 250 ERRQKRMIKNRESAARSRARRQAYTQELELKVSRLE 285
+R++KRM+ NRESA RSR R+Q ++L ++SRL+
Sbjct: 401 DRKRKRMVSNRESARRSRMRKQKQLEDLTAEMSRLQ 508
>TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor, partial
(50%)
Length = 645
Score = 40.8 bits (94), Expect = 3e-04
Identities = 17/42 (40%), Positives = 31/42 (73%)
Frame = +1
Query: 250 ERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERL 291
++++KRM NRESA RSR R+Q + + + +V +L++EN ++
Sbjct: 16 QKKRKRMQSNRESARRSRMRKQEHLEGMSAQVEQLKKENNQI 141
>TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (60%)
Length = 948
Score = 40.0 bits (92), Expect = 5e-04
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +3
Query: 250 ERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEEN 288
+R+ KR NRESA RSR R+Q++ ++L +V++L +EN
Sbjct: 54 QRKNKRKQSNRESARRSRMRKQSHLEDLTSQVTQLTKEN 170
>AV426757
Length = 415
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/37 (48%), Positives = 25/37 (66%)
Frame = +1
Query: 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEE 287
+R KR++ NR+SA RSR R+ Y ELE V+ L+ E
Sbjct: 46 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTE 156
>TC18406 similar to UP|O23726 (O23726) B-Zip DNA binding protein, partial
(14%)
Length = 491
Score = 37.7 bits (86), Expect = 0.003
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRL 284
+R KR++ NR+SAARS+ R+ Y ELE K+ L
Sbjct: 390 KRAKRILANRQSAARSKERKACYVLELERKIHSL 491
>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
{Mus musculus;}, partial (3%)
Length = 2631
Score = 31.6 bits (70), Expect = 0.19
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Frame = +2
Query: 55 SVEAGEVSDFGGSDVAATAGGNMQHNQLGGFNSQESLTLSGDLSKKTVDEVWKDMQGKKR 114
+V +S GS + GN+ N++ + SL L G K + D++ +
Sbjct: 1193 TVSTPPMSPLAGS--LSPKSGNLWQNKINLNLTPPSLQLPGSRLKTALSARDFDLEMEML 1366
Query: 115 GVDRDRKSREKQQTLGEMTLEDFLVKAGVVGESFHGKESGLL---------RVDSNEDSR 165
G+ + +++QQ + +E+ A + SF + L VDSN S+
Sbjct: 1367 GLGSPTRQQQQQQQQQQQLIEEI---ARISSPSFRNRIGDLTPTNLDDLLGSVDSNLLSQ 1537
Query: 166 QKVSHGLHWMQYPVHSVQQQQHQYEKHTM 194
HGL P H Q +HQ + M
Sbjct: 1538 L---HGLSGPSTPTHLQSQSRHQMMQQNM 1615
>BP038346
Length = 529
Score = 27.7 bits (60), Expect = 2.7
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 251 RRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQNEMEKEVPTAPPPEPK 310
++++R ++ RESA R R + LE KV RLE + + ++E+ T E K
Sbjct: 268 QQRQRDVEFRESANDQRQRLLSDISRLEAKVERLEGQLQ------AKDREIATITRTEAK 429
Query: 311 N 311
N
Sbjct: 430 N 432
>AW720417
Length = 554
Score = 27.7 bits (60), Expect = 2.7
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 180 HSVQQQQHQY-EKHTMPGFAAVHAIQ 204
H QQQQHQY ++H MP H Q
Sbjct: 30 HQQQQQQHQYVQRHMMPNQQQYHQQQ 107
>TC18176 homologue to UP|AAP97495 (AAP97495) Cellulose synthase, partial
(22%)
Length = 743
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 107 KDMQGKKRGVDRDRKSREKQQTLGEMTLEDFLVKAGVVGESFHGKESGLL 156
K + K+G D+ + S+ T+ +LED ++ GV G F ++S L+
Sbjct: 372 KSSKSNKKGSDKKKSSKHVDPTVPIFSLED--IEEGVEGTGFDDEKSLLM 515
>BP085186
Length = 388
Score = 27.3 bits (59), Expect = 3.5
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -1
Query: 285 EEENERLRRQNEMEKEVPTAPPPEPKNQLRRTNS 318
EEE E + E E+E A P E KN+ N+
Sbjct: 256 EEEEEEEEEEEEEEEEEEEAEPEEEKNEEENVNT 155
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,342,236
Number of Sequences: 28460
Number of extensions: 51103
Number of successful extensions: 383
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of query: 321
length of database: 4,897,600
effective HSP length: 90
effective length of query: 231
effective length of database: 2,336,200
effective search space: 539662200
effective search space used: 539662200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146910.4