TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146910.2 + phase: 1 /pseudo/partial
         (757 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066347                                                               34  0.076
TC19576 homologue to UP|Q9M7Y4 (Q9M7Y4) F3E22.8 protein, partial...    31  0.64
BP055577                                                               31  0.84
TC13631 similar to UP|Q9SGN7 (Q9SGN7) F3M18.17 (At1g28390/F3M18_...    30  1.4
TC16673 homologue to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-conta...    28  4.2
BP065568                                                               28  5.4
TC13859 similar to UP|Q9ZUE6 (Q9ZUE6) F5O8.3 protein, partial (23%)    28  7.1
TC13016 similar to UP|Q9LNN0 (Q9LNN0) F8L10.9 protein, partial (7%)    27  9.3
TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Cr...    27  9.3

>BP066347 
          Length = 572

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +2

Query: 87  VNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIAFLKSLPAAHPQE 137
           +ND   A G+ E +KAF  +LSY+G +     V  +YI  LK LP    +E
Sbjct: 302 MNDALSALGELEFRKAF-LLLSYIGRESLENVVTGDYIRSLKDLPMGRFEE 451


>TC19576 homologue to UP|Q9M7Y4 (Q9M7Y4) F3E22.8 protein, partial (7%)
          Length = 583

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 54  VNNDDAIKQIFSRCLLNCLQVPLWRCYIRFIR 85
           +N+ +  K   S C+ NC+++P   CY  +IR
Sbjct: 578 INHQEQNKSTMSYCVFNCMKIPYPTCYEPYIR 483


>BP055577 
          Length = 583

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = +1

Query: 273 SIF*KRIDIASSNKRVIFTYEQCLMY------LYHYPDVWY 307
           S+F*  + ++SS+  +I T+ Q L +      L+H+P +W+
Sbjct: 76  SLF*PSLSLSSSSSIIILTFPQKLSFFFKLQTLFHFPGIWF 198


>TC13631 similar to UP|Q9SGN7 (Q9SGN7) F3M18.17 (At1g28390/F3M18_17),
           partial (8%)
          Length = 656

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 349 SRGAIQAAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTY 406
           S+ A++ ++++Y +L   S     +AH +   FLR  +GVE  ++    A K  S  +
Sbjct: 419 SKSAVRYSRRVYSDLGFSSNLMDLMAHTEEPEFLRDADGVEHTQQSSKPAEKVSSSRF 592


>TC16673 homologue to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-containing amine
           oxidase, partial (32%)
          Length = 669

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/26 (42%), Positives = 18/26 (68%)
 Frame = +1

Query: 538 DLDNLSRQEWLVKNTKKVEKSIMLNG 563
           D+D LS + W+V+NT+ V ++  L G
Sbjct: 526 DIDPLSARHWIVRNTRTVNRTGHLTG 603


>BP065568 
          Length = 532

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 514 ASESSLQDVVSRYSFMDLWPCSSNDLDNLSRQEWLVKNTKKVEKSIMLNGTTFIDKGPVA 573
           +S S+ Q +  +  F D++  S+N                 V+ S++L     + + P+A
Sbjct: 164 SSRSAYQSITFKPGFFDVYTVSTNP----------------VQCSVLLKAVCAVLRTPIA 295

Query: 574 SISTTSSKVVYPDTSKM 590
           +I   + K+  PD SK+
Sbjct: 296 NIDHLTVKLPDPDASKV 346


>TC13859 similar to UP|Q9ZUE6 (Q9ZUE6) F5O8.3 protein, partial (23%)
          Length = 499

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/35 (42%), Positives = 19/35 (53%)
 Frame = -1

Query: 168 DSFESSVSQKLAKGLISEYQPKYNSARAVYRERKK 202
           +SF SS SQK +K    +Y PKY +     R R K
Sbjct: 304 ESFISSSSQKRSKIFKWQYPPKYPALNKAIRNRTK 200


>TC13016 similar to UP|Q9LNN0 (Q9LNN0) F8L10.9 protein, partial (7%)
          Length = 545

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 149 YQRAIITPTHHIEQLWKDYD 168
           Y   ++ P+HH++Q+ KD+D
Sbjct: 46  YSGPLLVPSHHMDQMLKDHD 105


>TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
           protein-like, partial (26%)
          Length = 822

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 8/42 (19%), Positives = 26/42 (61%)
 Frame = +3

Query: 443 YILEYADFLIRLNDDQNIRALFERALSSLPLEDSVEVWKRFV 484
           ++++Y      + + + +R ++ERA++++P  +    W+R++
Sbjct: 9   FLVDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYI 134


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,123,064
Number of Sequences: 28460
Number of extensions: 181615
Number of successful extensions: 959
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of query: 757
length of database: 4,897,600
effective HSP length: 97
effective length of query: 660
effective length of database: 2,136,980
effective search space: 1410406800
effective search space used: 1410406800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)