BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146865.13 - phase: 0
(592 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV410255 97 6e-21
AW719220 31 0.50
TC14426 similar to PIR|T50796|T50796 chorismate mutase CM2 - Ara... 30 1.1
TC11166 weakly similar to UP|Q9FXJ3 (Q9FXJ3) F1K23.17, partial (... 29 2.5
BP040276 28 3.2
TC10989 28 4.2
TC14869 28 4.2
BP042422 28 4.2
TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Ar... 28 5.5
BP057208 28 5.5
TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial ... 27 7.2
AV419340 27 7.2
TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphohep... 27 7.2
TC15409 weakly similar to GB|AAG40073.2|13265596|AF324722 AT4g15... 27 9.3
TC12075 27 9.3
>AV410255
Length = 429
Score = 97.4 bits (241), Expect = 6e-21
Identities = 64/125 (51%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Frame = +3
Query: 435 SNPMISTENKLSNQVDEPSTRFQPQETGKNVLQCAADQI-EELSDFVVSHTANVDLKTQV 493
SNPMIST NK S VDE T+F+ E K+VL AAD + EEL VV TA D+ +V
Sbjct: 69 SNPMISTVNKSSKLVDEQLTKFELHEPAKDVLPSAADPVGEELISNVVCQTAKEDM--EV 242
Query: 494 HGETYPDLDSKCNEAESNQDSPALSLPPNIEANIITSNHSNTTSNASEHNRINLHSVADV 553
+ P+LDSK EA S +P SLP N E NI T NHSNT+S SE N I+ H ADV
Sbjct: 243 REQNSPNLDSKGYEAGS---TPEPSLPLNGEDNITTVNHSNTSSEVSEPNGISCHPAADV 413
Query: 554 MKKEI 558
K +I
Sbjct: 414 NKSDI 428
>AW719220
Length = 503
Score = 31.2 bits (69), Expect = 0.50
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +1
Query: 226 RNSSQSSQNICRNSEERCFEQDGDEHLPLVKRWRVRMGKSSSTEGELNSIPHTPGKSCKE 285
+N+S + Q NS E F DG++ L++ W V + KSC E
Sbjct: 1 KNTSDAEQGGLVNSSETNFIIDGNDFPSLIEEWEVGKTVDGRESSACSQFDDPLMKSCLE 180
Query: 286 DINSPPQMIASSNCENR-----GSADVGSSVLIGTMDNVS 320
+ +M +NR S+D ++ ++ +M N +
Sbjct: 181 STDQDSKMELRRKRKNRDSEIQDSSDTPATRILRSMKNTA 300
>TC14426 similar to PIR|T50796|T50796 chorismate mutase CM2 - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (9%)
Length = 535
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = -3
Query: 488 DLKTQVHGETYPDLDSKCNEAESNQDSPALSLPPNIEANIITSNHSNTTSNASEHNR 544
DL TQ+ +Y + ++K + +S+ SP L P E +I +H N ++S H+R
Sbjct: 407 DLATQIK-TSYENREAKKRQGKSSS*SP*LEWPQCFEQHIRPMSHKNPGFSSSFHHR 240
>TC11166 weakly similar to UP|Q9FXJ3 (Q9FXJ3) F1K23.17, partial (15%)
Length = 495
Score = 28.9 bits (63), Expect = 2.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 518 SLPPNIEANIITSNHSNT 535
++PPNI IITSNHS T
Sbjct: 292 TIPPNILRRIITSNHSRT 239
>BP040276
Length = 556
Score = 28.5 bits (62), Expect = 3.2
Identities = 15/54 (27%), Positives = 25/54 (45%)
Frame = +1
Query: 186 KGLDLKIKGVVNKKKRNPNRKRATNDTSKPTIRVEEELGVRNSSQSSQNICRNS 239
K L +KG V+ +PN + + T P +V + GV N+ + Q + S
Sbjct: 382 KSLPESVKGSVDSSSPSPNLQGTGSATPSPQRQVRDNAGVNNTLPTQQKPYKRS 543
>TC10989
Length = 607
Score = 28.1 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 364 MSANAAEEGQAHVESSASRMTSIATCCIS 392
+++NAA+ G +HVE+ A R+ + C ++
Sbjct: 211 LNSNAAKNGVSHVETLAKRLPTTCRCMVT 125
>TC14869
Length = 828
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Frame = -2
Query: 183 ELNKGLDLKIKGVVNKKKRNP-NRKRATNDTSKPTIRVEEELGVRNSSQSSQNICRNSEE 241
E + +L+ G K+ NP R+ A +D RVEE R++ S N R+S
Sbjct: 806 ECQRSENLRFIGQSTTKQNNPRGRREAESDLPLCVERVEELCRERSTRSSKPNHARSSSC 627
Query: 242 RCFEQDG 248
+ ++ G
Sbjct: 626 QAIQKQG 606
>BP042422
Length = 526
Score = 28.1 bits (61), Expect = 4.2
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 7/76 (9%)
Frame = +3
Query: 511 NQDSPALSLPPNIEANIITSNHSNTTSNASEHNRINLHSVADVMKKEIISPNLDPPRNEV 570
N + P LS P E N S + L+ +ADV + ++ +LDPPR E+
Sbjct: 6 NFEIPFLS*PNK*EPNFAHSKEEEQHTRRKNIRGCWLN-MADVAQLAFLTLHLDPPREEI 182
Query: 571 V-------ISEGTKCL 579
EG KCL
Sbjct: 183 KTLIREKDAGEGDKCL 230
>TC11503 similar to GB|AAO63311.1|28950775|BT005247 At3g02220 {Arabidopsis
thaliana;}, partial (60%)
Length = 975
Score = 27.7 bits (60), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 9 DSHGLVCPAEDDSAAVLKDESHDNE 33
D G VC EDD+++ KD DNE
Sbjct: 590 DCDGEVCDDEDDNSSENKDSDEDNE 664
>BP057208
Length = 509
Score = 27.7 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 520 PPNIEANIITSNHSNTTSNASEH 542
PP E + T NHS+TT N +H
Sbjct: 280 PPVTEFQLSTFNHSSTTKNTKKH 348
>TC14545 similar to UP|Q9FT78 (Q9FT78) P23 co-chaperone, partial (46%)
Length = 1127
Score = 27.3 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 514 SPALSLPPNIEANIITSNHSNTTSNASEHNRIN 546
SP + +PPN E +I + S TTS++S ++
Sbjct: 520 SPPIPIPPNFEKSIPPISGSATTSSSSSSTHLS 422
>AV419340
Length = 300
Score = 27.3 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = -1
Query: 303 GSADVGSSVLIGTMDNVSPSKNFTPCF 329
G D GSS+L D++S K F+P F
Sbjct: 282 GRTDFGSSILSNRHDHLSRGKKFSPFF 202
>TC8852 similar to UP|O24046 (O24046) 2-dehydro-3-deoxyphosphoheptonate
aldolase precursor , partial (31%)
Length = 808
Score = 27.3 bits (59), Expect = 7.2
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Frame = +3
Query: 374 AHVESSASRMTSIATCCISSIKTS-----PDVAINDHEGGGLELQKFDACG---GGDSSH 425
+H+ S S+ + +T ISS TS P L F G +SS
Sbjct: 72 SHISSQQSKANTFSTMAISSTATSLKSLTPQTHSLIPSSTKLNQSPFSRPKPKPGPNSSI 251
Query: 426 IIVHSISANSNPMISTENKLSNQVDEPSTRFQPQETGK 463
VH+ NP++ST+ ST + TGK
Sbjct: 252 FAVHAAEPAKNPVVSTDKPQIPPQPTASTAVRNAGTGK 365
>TC15409 weakly similar to GB|AAG40073.2|13265596|AF324722 AT4g15610
{Arabidopsis thaliana;} , partial (15%)
Length = 570
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 215 PTIRVEEELGVRNSSQSSQNICRNSEERCFEQDGDEHLPLVKRW 258
P ++EEELG + + C++ E+ ++G+ + K W
Sbjct: 503 PEQKIEEELGFKGRFSDDRE*CKSCEDTIESRNGECSHKIYKSW 372
>TC12075
Length = 564
Score = 26.9 bits (58), Expect = 9.3
Identities = 21/89 (23%), Positives = 34/89 (37%), Gaps = 5/89 (5%)
Frame = +1
Query: 264 KSSSTEGELNSIPHTPGKSCKEDI-----NSPPQMIASSNCENRGSADVGSSVLIGTMDN 318
K S G ++ H P + ED + P + S C G G + L+ T
Sbjct: 121 KRSRAHGAVDWEDHDPLGNTSEDSMETSRQNSPLCSSKSQCAVEGCLSKGFAGLLSTRSF 300
Query: 319 VSPSKNFTPCFENQVCNTKKDQTFCSVDC 347
V + F ++C++K Q C + C
Sbjct: 301 VQFGRERRASFR*RICHSKGIQISC*LVC 387
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.124 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,703,264
Number of Sequences: 28460
Number of extensions: 127996
Number of successful extensions: 553
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of query: 592
length of database: 4,897,600
effective HSP length: 95
effective length of query: 497
effective length of database: 2,193,900
effective search space: 1090368300
effective search space used: 1090368300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146865.13