BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146864.1 + phase: 0
(194 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV414506 30 0.36
TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precur... 27 2.3
CB827010 27 2.3
AV407500 27 2.3
AV425237 27 3.0
TC7987 similar to UP|Q8S2R9 (Q8S2R9) Aluminum-induced protein-li... 27 3.0
TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation ... 26 3.9
BP075842 26 3.9
TC16652 26 5.2
TC14686 similar to UP|PORA_CUCSA (Q41249) Protochlorophyllide re... 26 5.2
BP068338 26 5.2
BP063336 26 5.2
TC20190 similar to PIR|F96767|F96767 proteinase IV F2P9.14 [impo... 25 6.7
AW720566 25 6.7
BI416414 25 6.7
BP036623 25 6.7
BP033386 25 8.8
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 25 8.8
TC19077 similar to UP|Q39127 (Q39127) TINY mRNA, partial (29%) 25 8.8
>AV414506
Length = 423
Score = 29.6 bits (65), Expect = 0.36
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 8/51 (15%)
Frame = +1
Query: 81 FHGNKESSKQVEEIVKF--------LKPEIVFLELCSDRQEVLLHDNMEVS 123
FHG +S V +IVKF P+ F + C + +++H NME S
Sbjct: 169 FHGTALASYYVSDIVKFDDPIDALMENPDSEFAKFCQAKYLLVVHPNMEES 321
>TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precursor ,
partial (92%)
Length = 1416
Score = 26.9 bits (58), Expect = 2.3
Identities = 23/83 (27%), Positives = 36/83 (42%)
Frame = -3
Query: 50 ELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKESSKQVEEIVKFLKPEIVFLELCS 109
ELP EL+++ I D++ GG + L + + E +V L + EL
Sbjct: 367 ELPAELSRSQIGEFRDAVFSGG---IELRVHLRPPEVRLEDAEAVVMLLSRRVALPELRL 197
Query: 110 DRQEVLLHDNMEVSTILVHISDN 132
+R+EV L V +VH N
Sbjct: 196 ERREVALRVQQVVVVDVVHYLTN 128
>CB827010
Length = 555
Score = 26.9 bits (58), Expect = 2.3
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -3
Query: 176 YSIFRMVTSWLDAEACFN 193
+S+F V+ WLD ACFN
Sbjct: 337 FSLFYDVSDWLDDAACFN 284
>AV407500
Length = 428
Score = 26.9 bits (58), Expect = 2.3
Identities = 10/18 (55%), Positives = 13/18 (71%)
Frame = -2
Query: 176 YSIFRMVTSWLDAEACFN 193
+S+F V+ WLD ACFN
Sbjct: 304 FSLFYDVSDWLDDAACFN 251
>AV425237
Length = 424
Score = 26.6 bits (57), Expect = 3.0
Identities = 14/32 (43%), Positives = 18/32 (55%)
Frame = -2
Query: 4 LRSRCCLSTRLRKVIQTTFTTLPCFSTTSAAF 35
LRS L+ +I TF LP FST S++F
Sbjct: 282 LRSASSLNALAPPLIVPTFMRLPVFSTASSSF 187
>TC7987 similar to UP|Q8S2R9 (Q8S2R9) Aluminum-induced protein-like
protein, partial (40%)
Length = 606
Score = 26.6 bits (57), Expect = 3.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 97 FLKPEIVFLELCSDRQEVLLHDNMEVSTILVHISDNAIMTIRCSF 141
+LK +IVF+ S+R+ +LLHD + S L + ++ S+
Sbjct: 589 YLKQQIVFI*DESERKSILLHDRCQ*SMSLTICLQTTLSSLMKSY 455
>TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (23%)
Length = 986
Score = 26.2 bits (56), Expect = 3.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 18 IQTTFTTLPCFSTTSAAFCRDQSPEKERQRRLELPKEL 55
IQ+T TT PC ++ C+D+ + +R+ P+EL
Sbjct: 439 IQST-TTNPCLCSSFVTLCKDRQFLSQLERQCLQPREL 329
>BP075842
Length = 434
Score = 26.2 bits (56), Expect = 3.9
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -1
Query: 116 LHDNMEVSTILVHISDNAIMTIRCSFSC 143
+H EVS L SD+ +M + CSF C
Sbjct: 128 IHVMNEVSQTLKLNSDDILMILHCSFKC 45
>TC16652
Length = 946
Score = 25.8 bits (55), Expect = 5.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 31 TSAAFCRDQSPEKERQRRLELPKELTKNVIQLSCDSMEKGG 71
+S+A C SP+ ++R + LP ++ +QL ++ +GG
Sbjct: 155 SSSALCSPTSPDPPKERPISLPP--SQKRVQLPLAAVARGG 39
>TC14686 similar to UP|PORA_CUCSA (Q41249) Protochlorophyllide reductase,
chloroplast precursor (PCR) (NADPH-protochlorophyllide
oxidoreductase) (POR) , partial (51%)
Length = 706
Score = 25.8 bits (55), Expect = 5.2
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Frame = -1
Query: 97 FLKPEIVF-LELCSDRQEVLLHDNMEVSTILVHISDNAIMTIRCSFSCIDNQHYHSIINF 155
F PE+++ L +R EV +H+ +V +S ++ CSF I HYH + F
Sbjct: 574 F*SPEVIYKLANAVERGEV*VHN------AVVFLSYSSRFCSSCSFEEIPAGHYH--MPF 419
Query: 156 FNFSQALTMGE 166
SQ+L G+
Sbjct: 418 SCLSQSLGSGK 386
>BP068338
Length = 463
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/43 (30%), Positives = 22/43 (50%)
Frame = -1
Query: 123 STILVHISDNAIMTIRCSFSCIDNQHYHSIINFFNFSQALTMG 165
+TI+ N+++ IR F C + + YH++ F Q MG
Sbjct: 454 TTIIYLTF*NSVVLIRVDFGCDNLELYHNLRTSLVFFQVCFMG 326
>BP063336
Length = 539
Score = 25.8 bits (55), Expect = 5.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 121 EVSTILVHISDNAIMTIRC-SFSCIDNQHYHSIIN 154
E+ +L I + I + C SFSCI +HY+ I+
Sbjct: 125 EIRLVLGEIEHSRICSYPCISFSCISFKHYYWFIS 21
>TC20190 similar to PIR|F96767|F96767 proteinase IV F2P9.14 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(13%)
Length = 570
Score = 25.4 bits (54), Expect = 6.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 110 DRQEVLLHDNMEVSTILVHISDNAIMTIRCSFSCIDNQHYHSIINFFNFSQAL 162
D+ V+ + ++ + ++ + N I +R SF C+ + HS +N QAL
Sbjct: 338 DKMIVMNYKQLQ*TKVIFYYGKNGI-GVRTSFQCLKHDSIHSGLNSI*KRQAL 183
>AW720566
Length = 549
Score = 25.4 bits (54), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 8 CCLSTRLRKVIQTTFTTLPCFST 30
CC ++ L +I +F+ L CFS+
Sbjct: 235 CCSNSSLTLLISASFSNLSCFSS 167
>BI416414
Length = 516
Score = 25.4 bits (54), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 8 CCLSTRLRKVIQTTFTTLPCFST 30
CC ++ L +I +F+ L CFS+
Sbjct: 235 CCSNSSLTLLISASFSNLSCFSS 167
>BP036623
Length = 524
Score = 25.4 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (76%)
Frame = -3
Query: 1 MNVLRSRCCLSTRLRKVIQTTF 22
MNVL+++CCL R V++T++
Sbjct: 333 MNVLQTKCCLRPRGFAVMETSW 268
>BP033386
Length = 498
Score = 25.0 bits (53), Expect = 8.8
Identities = 13/39 (33%), Positives = 18/39 (45%), Gaps = 2/39 (5%)
Frame = -3
Query: 27 CFSTTSAAFCRDQSPEKERQRRLELP--KELTKNVIQLS 63
C CRD E E +R LE+P K L+ + + S
Sbjct: 403 CMDLEEVKACRDLGFELEHERMLEIPSRKSLSNSTLDTS 287
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 25.0 bits (53), Expect = 8.8
Identities = 14/47 (29%), Positives = 21/47 (43%)
Frame = -1
Query: 40 SPEKERQRRLELPKELTKNVIQLSCDSMEKGGVCDVYLVGTFHGNKE 86
SP+ RQR L P L + LS D + +C + + H + E
Sbjct: 342 SPDGPRQRTLTEPTSLET*TLHLSIDYSYRSALCRISVHLAVHPHDE 202
>TC19077 similar to UP|Q39127 (Q39127) TINY mRNA, partial (29%)
Length = 586
Score = 25.0 bits (53), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 29 STTSAAFCRDQSPEKERQRRLELPKEL 55
S TS C D SP + R + PK+L
Sbjct: 45 SLTSQVHCPDPSPNRPEMSRPQQPKQL 125
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,705,561
Number of Sequences: 28460
Number of extensions: 47408
Number of successful extensions: 306
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of query: 194
length of database: 4,897,600
effective HSP length: 85
effective length of query: 109
effective length of database: 2,478,500
effective search space: 270156500
effective search space used: 270156500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146864.1