BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.9 + phase: 0
(100 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW719738 32 0.013
TC17696 similar to UP|Q9FUK8 (Q9FUK8) CONSTANS-like protein, par... 28 0.25
TC8197 UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, complete 27 0.43
BP048885 27 0.43
CN825365 27 0.56
BP030839 27 0.73
BP060613 26 1.3
TC7936 similar to UP|Q9SP53 (Q9SP53) Flavanone 3-hydroxylase, pa... 25 2.1
TC16405 similar to UP|Q93YH3 (Q93YH3) ATP citrate lyase b-subuni... 25 2.1
TC9838 similar to UP|Q96347 (Q96347) SLL2, partial (28%) 25 2.1
TC13692 similar to UP|AAR99599 (AAR99599) 4-alpha-glucanotransfe... 25 2.8
TC17672 similar to UP|Q93X83 (Q93X83) Hsp70 interacting protein/... 25 2.8
BF177827 24 3.6
BP041860 24 3.6
TC19993 weakly similar to UP|Q9LNI1 (Q9LNI1) F6F3.22 protein, pa... 24 3.6
TC14495 UP|O22618 (O22618) Aspartate aminotransferase , complete 24 4.8
AI967607 24 4.8
TC13230 24 4.8
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 24 4.8
BP061471 23 6.2
>AW719738
Length = 451
Score = 32.3 bits (72), Expect = 0.013
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 56 CYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHYFEW 97
C CGVK+ + G FFGCG + T C+YF W
Sbjct: 175 CDCGVKAPL-VTSWSDDNPGRRFFGCGMYKVTGKNCCNYFVW 297
>TC17696 similar to UP|Q9FUK8 (Q9FUK8) CONSTANS-like protein, partial (5%)
Length = 528
Score = 28.1 bits (61), Expect = 0.25
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 24 WKQSPEQPSAYPHFPFKARDMNTPIIQYHHP 54
W Q+P S P + + + N II +HHP
Sbjct: 359 WHQAPIPDSTAPSYSYSSSYSNQFIITFHHP 267
>TC8197 UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, complete
Length = 996
Score = 27.3 bits (59), Expect = 0.43
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 46 TPIIQYHHPCCYCGVKSSRGMVRKPGPKQGS 76
+P+ H PCC+ K G R+PG G+
Sbjct: 495 SPVCSSHQPCCH---KEQWGCSRRPGKDHGA 412
>BP048885
Length = 523
Score = 27.3 bits (59), Expect = 0.43
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 55 CCYCGVKSSRGMVRK 69
CCYCG S RG++R+
Sbjct: 461 CCYCGHASCRGILRR 505
>CN825365
Length = 511
Score = 26.9 bits (58), Expect = 0.56
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHY 94
PC +CGV S+ + R P++ L CG+ T+G +Y
Sbjct: 162 PCYHCGVTSTP-LWRNGPPEKPVLCNACGSRWRTKGTLANY 281
>BP030839
Length = 379
Score = 26.6 bits (57), Expect = 0.73
Identities = 9/22 (40%), Positives = 11/22 (49%)
Frame = +2
Query: 36 HFPFKARDMNTPIIQYHHPCCY 57
H P+ A P +HH CCY
Sbjct: 194 HTPYPAPPAALPCATHHHRCCY 259
>BP060613
Length = 378
Score = 25.8 bits (55), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 74 QGSLFFGCGNWTATRGAR-CHYFEW 97
QGS+ GC W +++G R H+ +W
Sbjct: 16 QGSMLSGCQVWWSSKGTRGVHWRKW 90
>TC7936 similar to UP|Q9SP53 (Q9SP53) Flavanone 3-hydroxylase, partial
(94%)
Length = 1492
Score = 25.0 bits (53), Expect = 2.1
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = -2
Query: 22 LIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGC 81
++ SP+ YPH P TP+ Q P C + S P P S GC
Sbjct: 762 ILGNNSPQPSGPYPHTPLLEPLSLTPLPQTTPPTA-CMLNPSASRCTPPSPP--STLLGC 592
>TC16405 similar to UP|Q93YH3 (Q93YH3) ATP citrate lyase b-subunit ,
partial (42%)
Length = 597
Score = 25.0 bits (53), Expect = 2.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -3
Query: 8 SITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPC 55
S+TNS W T+ K +P +P FP + T ++ H C
Sbjct: 310 SLTNSATWATS------KLRATKP-LFPRFPNSMSGLTTSLVDESHGC 188
>TC9838 similar to UP|Q96347 (Q96347) SLL2, partial (28%)
Length = 562
Score = 25.0 bits (53), Expect = 2.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 54 PCCYCGVKS 62
PCCYCG+ S
Sbjct: 282 PCCYCGIPS 308
>TC13692 similar to UP|AAR99599 (AAR99599) 4-alpha-glucanotransferase ,
partial (13%)
Length = 548
Score = 24.6 bits (52), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 64 RGMVRKPGPKQGSLFFGCGNWTATRGARCHY 94
+G++ P P QGS G+ T RG +C Y
Sbjct: 259 KGVLLSPSP-QGSELVWSGSITVPRGFQCQY 348
>TC17672 similar to UP|Q93X83 (Q93X83) Hsp70 interacting protein/thioredoxin
chimera, partial (33%)
Length = 709
Score = 24.6 bits (52), Expect = 2.8
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +3
Query: 2 HRGFKFSITNSIMWQTADRSLIWK 25
H F+F +T + T DR LIWK
Sbjct: 603 HADFRFMVTETGTKVT*DRLLIWK 674
>BF177827
Length = 494
Score = 24.3 bits (51), Expect = 3.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 61 KSSRGMVRKPGPKQGSLFFGCG 82
+SSRGMVR PG G FF G
Sbjct: 195 RSSRGMVRAPG---GRPFFTAG 139
>BP041860
Length = 362
Score = 24.3 bits (51), Expect = 3.6
Identities = 8/18 (44%), Positives = 9/18 (49%)
Frame = +3
Query: 81 CGNWTATRGARCHYFEWA 98
C WT G H +EWA
Sbjct: 96 CFGWTVPFGVLIHLYEWA 149
>TC19993 weakly similar to UP|Q9LNI1 (Q9LNI1) F6F3.22 protein, partial (7%)
Length = 566
Score = 24.3 bits (51), Expect = 3.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 12 SIMWQTADRSLIWKQSPEQPS 32
++ W + DRS W++SP + S
Sbjct: 141 ALAWVSCDRSRDWEESPREVS 79
>TC14495 UP|O22618 (O22618) Aspartate aminotransferase , complete
Length = 2030
Score = 23.9 bits (50), Expect = 4.8
Identities = 8/18 (44%), Positives = 11/18 (60%)
Frame = -2
Query: 49 IQYHHPCCYCGVKSSRGM 66
I Y HP +CG+ + R M
Sbjct: 826 ISYFHPLFWCGINTGRVM 773
>AI967607
Length = 378
Score = 23.9 bits (50), Expect = 4.8
Identities = 11/38 (28%), Positives = 18/38 (46%)
Frame = -2
Query: 4 GFKFSITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKA 41
GF+ +TN + W+ D+S + A P F+A
Sbjct: 371 GFQIKLTNELQWRWPDKSSADAGFSKDTHAAPCLCFRA 258
>TC13230
Length = 573
Score = 23.9 bits (50), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 51 YHHPCCYCGVKSSRGMVRK 69
+H P CY V S R VR+
Sbjct: 459 HHRPICYVQVLSDRSKVRR 403
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
clone:K14B20, partial (7%)
Length = 782
Score = 23.9 bits (50), Expect = 4.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 52 HHPCCYCGVKSSRGMVRKP 70
+HPCC SS+G R P
Sbjct: 588 YHPCCKHSPLSSQGSFRPP 532
>BP061471
Length = 356
Score = 23.5 bits (49), Expect = 6.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 9 ITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHP 54
I NS + + + LIW + QP+ H+ A Q HP
Sbjct: 144 ILNSFLGFSQGQPLIWASTVIQPATSQHWGSSAPHSEXAAAQPLHP 281
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.325 0.137 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,962,982
Number of Sequences: 28460
Number of extensions: 49018
Number of successful extensions: 402
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of query: 100
length of database: 4,897,600
effective HSP length: 76
effective length of query: 24
effective length of database: 2,734,640
effective search space: 65631360
effective search space used: 65631360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)
Medicago: description of AC146862.9