TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.6 - phase: 0 /pseudo
         (221 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8023                                                                 41  2e-04
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    30  0.25
TC18861                                                                26  4.7
BP051681                                                               25  8.1
TC18841                                                                25  8.1
BP037838                                                               25  8.1

>TC8023 
          Length = 1089

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +3

Query: 3  PFDIEAYKQKRDIEDTYIVNRFIQRRKKLEEAANQRLIDDY 43
          PFD+EAYK++ +IED YI N F +RR  + E    R+   Y
Sbjct: 54 PFDVEAYKRQSEIEDRYIFNLFRKRRNLILEGYTPRVKRKY 176


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 30.4 bits (67), Expect = 0.25
 Identities = 30/132 (22%), Positives = 56/132 (41%), Gaps = 1/132 (0%)
 Frame = +3

Query: 46  NEPTYDDAMFRRRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGISPLAKCTTTMRML 105
           + P + +  FRR +RM K  F  I  +L   D+  T++ +   +E I    +    +  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATFEMICREL---DSAVTKK-NTMLREAIPVRQRVAVCIWRL 524

Query: 106 AYGVAADAVDEYIKIGGTTTLECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSE-MQG 164
           A G     V +   +G +T  + +   C  I  +    +LR P++  +       E + G
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSG 704

Query: 165 FPGMIGSIDCMH 176
            P + G++   H
Sbjct: 705 IPNIGGAMYTTH 740


>TC18861 
          Length = 841

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +3

Query: 154 QRILHVSEMQGFPGMIGSIDCMH-----WEWK 180
           +RILH+ ++ G+ G +GS+  +      W WK
Sbjct: 213 RRILHLFQLNGYLG*MGSVKRLQLLRK*WSWK 308


>BP051681 
          Length = 586

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 165 FPGMIGSIDCMHWEWKNCPKAWEGTLN 191
           + G  G  DC HW     P  W   LN
Sbjct: 317 YGGNQGGNDCSHWCLPGLPDTWNELLN 237


>TC18841 
          Length = 568

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +2

Query: 174 CMHWEWKN-CPKAWEG 188
           C HWEW+N C K  +G
Sbjct: 326 CSHWEWENSCQKYLKG 373


>BP037838 
          Length = 377

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 157 LHVSEMQGFPGMIGSIDCMHWEWKN 181
           LH   M   PGM  S   +HWEW +
Sbjct: 331 LHSQRMMVIPGMRLSHWRIHWEWNS 257


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,540,226
Number of Sequences: 28460
Number of extensions: 43984
Number of successful extensions: 228
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of query: 221
length of database: 4,897,600
effective HSP length: 87
effective length of query: 134
effective length of database: 2,421,580
effective search space: 324491720
effective search space used: 324491720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)