BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146862.25 + phase: 0
(206 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI418906 203 2e-53
TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arab... 64 2e-11
AW164114 29 0.51
TC14233 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (67%) 29 0.66
TC14234 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (66%) 28 0.87
AV417246 28 1.5
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 27 1.9
BP054691 27 1.9
BP049986 27 2.5
TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Ar... 26 4.3
BI419240 26 4.3
TC10393 26 5.6
TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization ... 25 7.3
TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial ... 25 7.3
TC7822 similar to UP|Q42139 (Q42139) H+-transporting ATP synthas... 25 9.6
TC17021 homologue to UP|Q9SSP4 (Q9SSP4) F3N23.2 protein (At1g728... 25 9.6
>BI418906
Length = 556
Score = 203 bits (517), Expect = 2e-53
Identities = 115/159 (72%), Positives = 120/159 (75%), Gaps = 30/159 (18%)
Frame = +1
Query: 1 MASNLKMTPQLEQIHGEIRDIFRALANGFQKLDKIKDSNRQSTQLEELTGKMRDCKRLIK 60
MA+NL+MTPQLEQIHGEIRD FRALANGFQKLDKIKDSNRQSTQLEELTGKMR+CKRLIK
Sbjct: 79 MATNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIK 258
Query: 61 DFDREIKDEGAGNPEEVNKQLNDEKQSM-TEKNS-------------------------- 93
+FDREIKDE NP EV+KQLNDEKQSM E NS
Sbjct: 259 EFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGA 438
Query: 94 ---TAEGNVQLASEMSNQELVNAGMKTMDETDQAIERSK 129
TAE NVQLASEMSNQELVNA MKTMDETDQAIERSK
Sbjct: 439 SEPTAEENVQLASEMSNQELVNAXMKTMDETDQAIERSK 555
>TC10937 similar to PIR|C96522|C96522 F11A17.20 [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (21%)
Length = 551
Score = 63.9 bits (154), Expect = 2e-11
Identities = 30/32 (93%), Positives = 32/32 (99%)
Frame = +2
Query: 175 KEIGRQVATDKCIMLFLFLIVCGVIAIIVVKV 206
KEIGRQVATDKCIMLFLFLIVCGV+AIIVVK+
Sbjct: 2 KEIGRQVATDKCIMLFLFLIVCGVVAIIVVKI 97
>AW164114
Length = 297
Score = 29.3 bits (64), Expect = 0.51
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 2/81 (2%)
Frame = +2
Query: 69 EGAGNPEEVNKQL--NDEKQSMTEKNSTAEGNVQLASEMSNQELVNAGMKTMDETDQAIE 126
E G EE Q+ N +++ K+ TA+ Q A E + Q A KT A +
Sbjct: 44 ETMGRTEEKGNQMMGNIGEKAQAAKDKTAQ-TAQAAKEKTAQGAQAAKEKTQHTAQAAKD 220
Query: 127 RSKQVVHQTIEVGTQTASTLK 147
+++Q H T + QTA K
Sbjct: 221 KTQQAAHSTGDRTHQTAQAGK 283
>TC14233 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (67%)
Length = 1570
Score = 28.9 bits (63), Expect = 0.66
Identities = 21/106 (19%), Positives = 46/106 (42%), Gaps = 16/106 (15%)
Frame = +1
Query: 53 RDCKRLIKDFDREIKDEGAGNPEEVNKQLNDEKQSMTEKNSTAEGNVQLAS--------- 103
R +++F R+ K + +GNP + + +++ +STA+ +++ S
Sbjct: 88 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYS 267
Query: 104 -------EMSNQELVNAGMKTMDETDQAIERSKQVVHQTIEVGTQT 142
E N +L M+ +++ + + K+ VH + VG T
Sbjct: 268 PITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGST 405
>TC14234 homologue to UP|Q41027 (Q41027) PsHSC71.0, partial (66%)
Length = 1528
Score = 28.5 bits (62), Expect = 0.87
Identities = 21/106 (19%), Positives = 46/106 (42%), Gaps = 16/106 (15%)
Frame = +3
Query: 53 RDCKRLIKDFDREIKDEGAGNPEEVNKQLNDEKQSMTEKNSTAEGNVQLAS--------- 103
R +++F R+ K + +GNP + + +++ +STA+ +++ S
Sbjct: 69 RMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYS 248
Query: 104 -------EMSNQELVNAGMKTMDETDQAIERSKQVVHQTIEVGTQT 142
E N +L M+ +++ + + K+ VH + VG T
Sbjct: 249 PITRARFEELNMDLFRKCMEPVEKCLRDAKMDKKSVHDVVLVGGST 386
>AV417246
Length = 370
Score = 27.7 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +3
Query: 32 LDKIKDSNRQSTQLEELTGKMRDCKRLIKDFDREIKDEG 70
+DK+KDS + + + G+ R+ L FDR+++ G
Sbjct: 228 IDKLKDSKKSDDESKGTEGETRNEPTLKSKFDRKLETSG 344
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 27.3 bits (59), Expect = 1.9
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +3
Query: 41 QSTQLEELTGKMRDCKRLIKDFDREIKDEGAGNPEEVNKQLNDEKQSMTEKNSTAEGNVQ 100
+ T L++ D +++D + KDE + +E + +D+K+ S EG+ Q
Sbjct: 165 EETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDDDEDDDKEDGALGGS--EGSKQ 338
Query: 101 LASE-MSNQELVNAGMKTMDETDQ-AIERSKQVV 132
SE S + ++ G+K + + I+R+K ++
Sbjct: 339 SRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNIL 440
>BP054691
Length = 520
Score = 27.3 bits (59), Expect = 1.9
Identities = 15/64 (23%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Frame = +3
Query: 99 VQLASEMSNQELVNAGMKTM-DETDQAIERSKQVVHQTIEVGTQTASTLKGQTEQMGRIV 157
+ L + + N +K + D+ Q +E K + + QTA+T E + ++
Sbjct: 99 IVLETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELI 278
Query: 158 NELD 161
+ELD
Sbjct: 279 SELD 290
>BP049986
Length = 608
Score = 26.9 bits (58), Expect = 2.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 55 CKRLIKDFDREIKDEG 70
C R++ + DREI+DEG
Sbjct: 25 CMRILSELDREIRDEG 72
>TC11009 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;}, partial (44%)
Length = 700
Score = 26.2 bits (56), Expect = 4.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 180 QVATDKCIMLFLFLIVCGVIAIIVVKV 206
+V + ++ FLFL+V V+ IIV+++
Sbjct: 250 KVLCSQILLFFLFLVVVVVVIIIVIRI 170
>BI419240
Length = 561
Score = 26.2 bits (56), Expect = 4.3
Identities = 25/105 (23%), Positives = 39/105 (36%), Gaps = 2/105 (1%)
Frame = +2
Query: 42 STQLEELTGKMRDCKRLIKDFDREIKDEGAGNPEEVNKQLNDEKQSMTEKNSTAEGNVQL 101
S +L L R + K+F +IK E NPE EK K T + QL
Sbjct: 191 SRRLPPLVSVDRRRYSVFKEFSEKIKGEVKSNPE-------FEKSVKELKERTKQTTEQL 349
Query: 102 ASEMSN--QELVNAGMKTMDETDQAIERSKQVVHQTIEVGTQTAS 144
++ E K + + + + V +T +G Q +S
Sbjct: 350 YKQVDEVWTEAEATAKKVSHNVKEKLSAANEEVKETFWIGKQDSS 484
>TC10393
Length = 1063
Score = 25.8 bits (55), Expect = 5.6
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Frame = +1
Query: 37 DSNRQSTQLEELTGKMRDCKRLIKDFDREIKDEGAGNPEEVNKQLNDEKQSM-TEK 91
D+ R TQL KM+D +++ +E+K E +L DEKQ + TEK
Sbjct: 547 DAVRMVTQLRGEAQKMKDTNMGLQEKIKELKTE--------KNELRDEKQRLKTEK 690
>TC14538 similar to GB|AAH54382.1|32450414|BC054382 feminization 1 homolog a
{Mus musculus;}, partial (3%)
Length = 2631
Score = 25.4 bits (54), Expect = 7.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 60 KDFDREIKDEGAGNPEEVNKQLNDEKQSMTEK 91
+DFD E++ G G+P +Q ++Q + E+
Sbjct: 1337 RDFDLEMEMLGLGSPTRQQQQQQQQQQQLIEE 1432
>TC8053 similar to UP|Q94A20 (Q94A20) AT4g15470/dl3775w, partial (82%)
Length = 1109
Score = 25.4 bits (54), Expect = 7.3
Identities = 13/57 (22%), Positives = 27/57 (46%)
Frame = -3
Query: 64 REIKDEGAGNPEEVNKQLNDEKQSMTEKNSTAEGNVQLASEMSNQELVNAGMKTMDE 120
R KDEG + E+ +++ E++ +GN ++S ++ V+ +T E
Sbjct: 357 RNQKDEGEEDEEKEERRIAPEEEVKRSVEDGEDGNESGEDDLSGEDAVHLADETPSE 187
>TC7822 similar to UP|Q42139 (Q42139) H+-transporting ATP synthase CHAIN9 -
like protein (AT4G32260/F10M6_100) , partial (76%)
Length = 907
Score = 25.0 bits (53), Expect = 9.6
Identities = 25/109 (22%), Positives = 50/109 (44%), Gaps = 2/109 (1%)
Frame = +3
Query: 30 QKLDKIKDSNRQSTQLEELTGKMRDCKRLIKDFDREIKDEGAGNPEEVNKQLND-EKQSM 88
+KL+ +KD++ + QLEE + R E++ LN +K++
Sbjct: 459 EKLNSVKDTSSEVKQLEEQANAVLKAAR-----------------AEISAALNKMKKETQ 587
Query: 89 TE-KNSTAEGNVQLASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTI 136
E + AEG +++ +E+ QE + K +ET ++++ + Q I
Sbjct: 588 VEVEQKIAEGRLKVDAEL--QEALANLEKQKEETIKSLDSQIAALSQDI 728
>TC17021 homologue to UP|Q9SSP4 (Q9SSP4) F3N23.2 protein
(At1g72820/F3N23_2), partial (22%)
Length = 488
Score = 25.0 bits (53), Expect = 9.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 71 AGNPEEVNKQLNDEKQSMTEKNSTAE 96
AG P+E KQ+ DEK+ N E
Sbjct: 405 AGKPKEKKKQIQDEKRQEWNLNKRRE 328
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.130 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,007,916
Number of Sequences: 28460
Number of extensions: 15798
Number of successful extensions: 114
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of query: 206
length of database: 4,897,600
effective HSP length: 86
effective length of query: 120
effective length of database: 2,450,040
effective search space: 294004800
effective search space used: 294004800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146862.25