TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.18 - phase: 0 /pseudo
         (155 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV771745                                                              167  4e-45
TC14486 similar to UP|Q9LID9 (Q9LID9) Gb|AAD15384.1, partial (19%)     27  1.2
TC14487 similar to UP|Q9LID9 (Q9LID9) Gb|AAD15384.1, partial (22%)     27  2.0
TC10936 weakly similar to UP|Q9C887 (Q9C887) Myosin-like protein...    26  3.5
CB827332                                                               25  4.6

>AV771745 
          Length = 399

 Score =  167 bits (422), Expect(2) = 4e-45
 Identities = 85/98 (86%), Positives = 90/98 (91%)
 Frame = +3

Query: 16  VGDHIYTDVSQSKVHLRWRTALICRELEDEYSALIRCRGDRESLVELINQKEVVGDLFNQ 75
           VGDHIYTDVSQSKV+ RWRTA +CRELE+EYSALI  R  RES VELINQKEV+GDLFNQ
Sbjct: 105 VGDHIYTDVSQSKVNWRWRTAWVCRELEEEYSALIHSRSQRES*VELINQKEVLGDLFNQ 284

Query: 76  LRLALQRRSKDRPAQTLAATNMDDEDLTESMQKLLIVM 113
           LRLALQRRSKDRPAQTLAATNM D+DLTESMQKLLIVM
Sbjct: 285 LRLALQRRSKDRPAQTLAATNMKDDDLTESMQKLLIVM 398



 Score = 29.3 bits (64), Expect(2) = 4e-45
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +2

Query: 1  MVENSLGIHGDEIL 14
          MVENSL IHGDEIL
Sbjct: 59 MVENSLDIHGDEIL 100


>TC14486 similar to UP|Q9LID9 (Q9LID9) Gb|AAD15384.1, partial (19%)
          Length = 557

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 18/90 (20%), Positives = 43/90 (47%)
 Frame = -3

Query: 24  VSQSKVHLRWRTALICRELEDEYSALIRCRGDRESLVELINQKEVVGDLFNQLRLALQRR 83
           + + K  ++W T   C++ +D YS          +  EL +  +V  + FNQ +++  R 
Sbjct: 411 IGKRKTSIKWTTNTFCQKDKDHYST--------TNYKELTHAPQVYAERFNQKQIS--RA 262

Query: 84  SKDRPAQTLAATNMDDEDLTESMQKLLIVM 113
            + + A  L   + ++  +   ++ L+I++
Sbjct: 261 QQQQIAAQLQEKSQNN*SVFVKIKYLIILL 172


>TC14487 similar to UP|Q9LID9 (Q9LID9) Gb|AAD15384.1, partial (22%)
          Length = 493

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 24  VSQSKVHLRWRTALICRELEDEYSALIRCRGDRESLVELINQKEVVGDLFNQLRLA 79
           + + K  ++W T   C++ +D YS          +  EL +  +V  + FNQ +++
Sbjct: 416 IGKRKTSIKWTTNTFCQKDKDHYST--------TNYKELTHAPQVYAERFNQKQIS 273


>TC10936 weakly similar to UP|Q9C887 (Q9C887) Myosin-like protein, partial
           (14%)
          Length = 586

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 96  NMDDEDLTESMQKLLIVMQRLDEKI-APMLEADGELFNSRWG 136
           NMD  + ++SMQ  L+ M R  EK+ A +  ADG      WG
Sbjct: 27  NMDIMEQSQSMQTHLVSMAREVEKLRAELANADGR----HWG 140


>CB827332 
          Length = 511

 Score = 25.4 bits (54), Expect = 4.6
 Identities = 14/44 (31%), Positives = 20/44 (44%)
 Frame = -1

Query: 65  QKEVVGDLFNQLRLALQRRSKDRPAQTLAATNMDDEDLTESMQK 108
           Q+  +G L   L L LQ   K +PA +  A  +   DLT    +
Sbjct: 508 QRSSIGSLMLPLXLTLQH*GKSKPASSRPAFVICGHDLTSKYSR 377


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,283,819
Number of Sequences: 28460
Number of extensions: 23675
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)