TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.17 + phase: 0 
         (310 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP039630                                                               53  7e-08
AV424426                                                               32  0.10
TC17615 similar to UP|R101_ARATH (Q9SW09) 40S ribosomal protein ...    30  0.52
BP073425                                                               28  2.6
TC9455 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3  (At1...    27  4.4
TC19558 UP|CHLD_PEA (O22437) Magnesium-chelatase subunit chlD, c...    27  5.8
TC14923 similar to UP|AAQ88099 (AAQ88099) NADPH-dependent cinnam...    27  5.8
TC18568                                                                26  7.5
TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate tr...    26  7.5
TC17929                                                                26  9.8
TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine ...    26  9.8
TC19036                                                                26  9.8

>BP039630 
          Length = 550

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
 Frame = +3

Query: 7   AATSSVVTPIP---SPTSLLSPNQDGYKWRLLLSYDGTRYAGWQYQESPPTVQCAVEKAL 63
           A  S +  PIP        +S  Q   ++ L + Y GTR++G Q Q +  TV   +E+A 
Sbjct: 96  AKISKIEHPIPIDGDEEEGMSQKQRIQRYLLAIEYIGTRFSGSQKQLTCRTVVGVLEEAF 275

Query: 64  IRATKLQRKDLQLVGASRTDAGVHAWGQVAH-------------FLTPFNYDNLDSVHAA 110
               K   + + +  +SRTDAGVHA   V H              LTP        V  A
Sbjct: 276 C---KFLSQPVSVTCSSRTDAGVHALSNVCHVDIQRISKRRPGELLTP---HEPSVVRKA 437

Query: 111 LNGLL---PSDIRVREISPASAEFHARFSVKSKIYHY 144
           +N  L    +D+ V ++    ++FHAR+  + + Y Y
Sbjct: 438 VNHFLQKHDNDLMVIDVRCVPSDFHARYKAQERTYFY 548


>AV424426 
          Length = 249

 Score = 32.3 bits (72), Expect = 0.10
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -1

Query: 296 SFGMHHTIRKCKVVF 310
           SFG HHTIRKCKV F
Sbjct: 246 SFGRHHTIRKCKVPF 202


>TC17615 similar to UP|R101_ARATH (Q9SW09) 40S ribosomal protein S10-1,
           partial (65%)
          Length = 401

 Score = 30.0 bits (66), Expect = 0.52
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 244 ATPPDIVPH----ILASRDRKELAKYCYYLPPHGLCLVSINYN 282
           ++PP   PH    I++ ++RKE+ KY +     G+C    +YN
Sbjct: 9   SSPPSPAPHLATMIISEKNRKEICKYLFQ---EGVCFAKKDYN 128


>BP073425 
          Length = 392

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 16/51 (31%), Positives = 21/51 (40%)
 Frame = +2

Query: 240 IGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNESHLLPPP 290
           IG+   PP   P   +SR       +C  L P   CLVS  +    + P P
Sbjct: 95  IGRVLKPPSPTPPPHSSRGAARALSFCALLGPPSSCLVSAPFPLPWIGPRP 247


>TC9455 similar to UP|Q9LKX5 (Q9LKX5) Acyl-CoA oxidase ACX3  (At1g06290) ,
           partial (50%)
          Length = 1361

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 ASRDRKELAKYCYYLPPHGLCLVS 278
           A+  RKE+ K C  L PH L LVS
Sbjct: 888 AAAVRKEVPKLCAELRPHALALVS 959


>TC19558 UP|CHLD_PEA (O22437) Magnesium-chelatase subunit chlD, chloroplast
           precursor  (Mg-protoporphyrin IX chelatase)
           (Mg-chelatase subunit D) , partial (6%)
          Length = 541

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (64%)
 Frame = -3

Query: 264 KYCYYLPPHGLCLVSINYNESHL 286
           K    LP   +C++ +NY+ESHL
Sbjct: 71  KVALILPMRWVCMLYLNYDESHL 3


>TC14923 similar to UP|AAQ88099 (AAQ88099) NADPH-dependent cinnamyl alcohol
           dehydrogenase, partial (15%)
          Length = 748

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 34  LLLSYDGTRYAGWQYQESPPTVQCAVEKALIRATKLQ 70
           L+L+    R+AG  +  SP TVQC     + R +  Q
Sbjct: 560 LVLTLSHHRFAGASFSHSPTTVQCCRSSIVHRRSCFQ 450


>TC18568 
          Length = 719

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 150 TIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKH 183
           T +DPF R  A HN   L+S  +R+     + KH
Sbjct: 562 TSLDPFSRRMARHNK-ALDSVMLRQMEELPLAKH 464


>TC13393 similar to UP|Q9FMU6 (Q9FMU6) Mitochondrial phosphate translocator
           (AT5g14040/MUA22_4), partial (8%)
          Length = 541

 Score = 26.2 bits (56), Expect = 7.5
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +1

Query: 2   SLALAAATSSVVTPIPSPTSLLSPN 26
           SLA  AA+SS  +P PSP   LSPN
Sbjct: 184 SLAAPAASSSRTSP-PSPAPSLSPN 255


>TC17929 
          Length = 791

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 251 PHILASRDRKELAKYCY-YLPPHGLCLVSINYNESHLLPPPGCPAKSFG 298
           PH+ A+  R ++  YC+  L   G    S  +  SH+  P  C   SFG
Sbjct: 240 PHLTAASPRNQIQFYCHLQLYDPG*FYYSAQHPTSHIFSPEEC---SFG 103


>TC8307 weakly similar to UP|Q9SP47 (Q9SP47) Homeodomain-leucine zipper
           protein 57, partial (51%)
          Length = 1629

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 19/56 (33%), Positives = 27/56 (47%)
 Frame = +1

Query: 233 MVALLLQIGKEATPPDIVPHILASRDRKELAKYCYYLPPHGLCLVSINYNESHLLP 288
           +V+LLLQ      PP + P  L  R R    +    L PH L LV +  ++ + LP
Sbjct: 82  LVSLLLQTPHTKPPPPLSPPPLCVRFR----RIHLSLIPHRLPLVLLILSDGYALP 237


>TC19036 
          Length = 613

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 18/65 (27%), Positives = 28/65 (42%), Gaps = 7/65 (10%)
 Frame = +3

Query: 231 RNMVALLLQIGKEATPPDIVPHI------LASRDRKELAKYCYYLPPHGLCLVS-INYNE 283
           RN +  L +I    + PD+ P +        +     L+ +C  +  HGLCL S +    
Sbjct: 141 RNRLLFLHEIAPPPSLPDLKPQLRRHHLPFPNPPSLTLSDHCVAVTEHGLCLRSPVLARH 320

Query: 284 SHLLP 288
            H LP
Sbjct: 321 LHALP 335


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,427,334
Number of Sequences: 28460
Number of extensions: 100804
Number of successful extensions: 515
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of query: 310
length of database: 4,897,600
effective HSP length: 90
effective length of query: 220
effective length of database: 2,336,200
effective search space: 513964000
effective search space used: 513964000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)