BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146856.7 + phase: 0
(241 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%) 114 1e-26
BP030979 46 5e-06
TC8372 similar to UP|O04334 (O04334) At2g30610 protein, partial ... 36 0.005
TC19338 similar to GB|AAC49358.1|1388088|PSU35831 thioredoxin m ... 30 0.48
TC11708 similar to UP|O82718 (O82718) Cyclin, partial (31%) 29 0.83
TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%) 28 1.1
TC14335 similar to UP|MEP1_SOYBN (P29136) Metalloendoproteinase ... 28 1.4
AV774873 27 2.4
TC9576 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin li... 27 3.1
AV424751 27 3.1
TC16776 26 7.0
TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathion... 26 7.0
BP068663 25 9.1
TC11620 weakly similar to UP|Q9ZVZ4 (Q9ZVZ4) T25N20.9, partial (... 25 9.1
>TC11206 similar to UP|Q84V88 (Q84V88) Cyclin D, partial (43%)
Length = 816
Score = 114 bits (285), Expect = 1e-26
Identities = 70/211 (33%), Positives = 106/211 (50%), Gaps = 3/211 (1%)
Frame = +2
Query: 7 TPFSLSSLMCHEQDESTLIFEEDEDESTFFINSSLDNNNNNPWFLLDDEEEYIQYLFKQE 66
+P L +L+C EQ F++D++E + N++P L +E++ + L E
Sbjct: 125 SPSFLDALLCEEQHT----FDDDDEEKATHA-TECHTINDDPLILFWEEDDELVSLISNE 289
Query: 67 TGLGFGSITHFLCYDDHDVEVEDDDSSKSLFWLRNARLHAIDWIFNTQAKFGFTVQTAYL 126
G TH D HD R+ + WI A FGF+ T L
Sbjct: 290 RGE-----THLGSLDLHD---------------GGTRVEGVAWISKVSAHFGFSALTTVL 409
Query: 127 SINYFDRFLSKRSIDESKPWAIQLLSVACLSIAAKMEEQSVPPLSEYPIE---YRFENKV 183
+++YFDRF++ KPW QL +VACLS+AAK+EE VP L + +E + FE K
Sbjct: 410 AVSYFDRFITSPRFQRDKPWMTQLSAVACLSLAAKVEETHVPLLLDLQVEESRFVFEAKT 589
Query: 184 IKNMELLILSTLEWKMGLPTPFAYLHYFFTK 214
I+ MELL+LSTL+W+M TP ++ + +
Sbjct: 590 IQRMELLVLSTLKWRMHPVTPISFFEHIIRR 682
>BP030979
Length = 510
Score = 46.2 bits (108), Expect = 5e-06
Identities = 23/64 (35%), Positives = 34/64 (52%)
Frame = +3
Query: 101 NARLHAIDWIFNTQAKFGFTVQTAYLSINYFDRFLSKRSIDESKPWAIQLLSVACLSIAA 160
N R +DW+ ++ T Y ++Y DRFLS S+ K +QLL VA + +A+
Sbjct: 327 NMRGVXVDWLVEVSEEYKLVSDTLYFCVSYIDRFLSLNSLSRQK---LQLLGVASMLVAS 497
Query: 161 KMEE 164
K EE
Sbjct: 498 KYEE 509
>TC8372 similar to UP|O04334 (O04334) At2g30610 protein, partial (98%)
Length = 1366
Score = 36.2 bits (82), Expect = 0.005
Identities = 30/118 (25%), Positives = 51/118 (42%), Gaps = 3/118 (2%)
Frame = +2
Query: 32 ESTFFINSSLDNNNNNPWFLLDDEEEYIQYLFKQETGLGFGSITHFLCYDDHDVEVEDDD 91
+ T F L+N +N+ W+++D +++ Q + T GS C++ ++
Sbjct: 827 QGTCFAGPRLENGHNSTWWMVDLGQDH-QLMCNYYTLRQDGSKAFPRCWN-----IQGSL 988
Query: 92 SSKSLFWLRNARLHAIDWIFNTQAKFG---FTVQTAYLSINYFDRFLSKRSIDESKPW 146
KS W +N R+H DW +F T A L YF L+ + D + PW
Sbjct: 989 DGKS--W-KNLRVHENDWTVCKPGQFASWPITGPNALLPFRYFRVVLTGSTTDATNPW 1153
>TC19338 similar to GB|AAC49358.1|1388088|PSU35831 thioredoxin m {Pisum
sativum;} , partial (65%)
Length = 476
Score = 29.6 bits (65), Expect = 0.48
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 7 TPFSLSSLMCHEQDESTLIFEEDEDESTFFINSSLDNNNNNPWFLLDDEEEYIQYLFKQE 66
T FS +C Q + E+D D +F D + +NPWF++ + Y+ +
Sbjct: 475 TEFSSMGNLCKMQSLQNV--EKDMDTKYYF-----DKS*DNPWFMILNSYSYVFLQ*CSQ 317
Query: 67 TGLGFGS 73
+GLG G+
Sbjct: 316 SGLGNGT 296
>TC11708 similar to UP|O82718 (O82718) Cyclin, partial (31%)
Length = 668
Score = 28.9 bits (63), Expect = 0.83
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 190 LILSTLEWKMGLPTPFAYLHYF 211
+IL LEW + +PTPF +L F
Sbjct: 2 IILGRLEWTLTVPTPFVFLTRF 67
>TC10743 similar to UP|Q8H955 (Q8H955) B1 type cyclin, partial (21%)
Length = 554
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 184 IKNMELLILSTLEWKMGLPTPFAYL 208
I +ME IL L+W + +PTP+ +L
Sbjct: 31 IHSMERSILEKLQWYLTVPTPYVFL 105
>TC14335 similar to UP|MEP1_SOYBN (P29136) Metalloendoproteinase 1 precursor
(SMEP1) , partial (9%)
Length = 1574
Score = 28.1 bits (61), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -2
Query: 156 LSIAAKMEEQSVPPLSEYPIEY 177
LS+ +EE VPPL E+P+ +
Sbjct: 985 LSVVVPLEEAEVPPLLEFPVTF 920
>AV774873
Length = 576
Score = 27.3 bits (59), Expect = 2.4
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -2
Query: 174 PIEYRFENKVIKNMELLILSTLEWKMGLPTPFAYLHYFFTKFCNGSRSET--IITKATQH 231
PI+ ++E+ + +N+ L IL E +P P A L F + +G+ ++ ++ AT H
Sbjct: 395 PIDTKYEHGLSRNLAL*ILDVQESGQRVPCPSA-LTPFLSLI*SGAEADNQKLLPSATAH 219
Query: 232 IVT 234
+ T
Sbjct: 218 VPT 210
>TC9576 similar to UP|O23292 (O23292) Ankyrin homolog (Ankyrin like
protein), partial (8%)
Length = 529
Score = 26.9 bits (58), Expect = 3.1
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = -2
Query: 45 NNNPWFLLDDEEEYIQYLFKQETGLGFGSITHFLCYDDHDVEV 87
+ P FLLD++ +I LF+ TG I C+ H EV
Sbjct: 204 SGEPQFLLDNKNNFIAILFRVRTG-----ICSCNCFPVHGCEV 91
>AV424751
Length = 426
Score = 26.9 bits (58), Expect = 3.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 27 EEDEDESTFFINSSLDNNNNNPWFLLDDEEEYIQYLFKQET 67
EE+E+E+ F SSL N+P L Y+ ++ T
Sbjct: 198 EEEEEEAGFCC*SSLGTRENHPSILRSQSTVYLSRIYHTHT 76
>TC16776
Length = 606
Score = 25.8 bits (55), Expect = 7.0
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -1
Query: 205 FAYLHYFFTKFC 216
F YLHYFF++ C
Sbjct: 207 FTYLHYFFSELC 172
>TC15244 similar to UP|O49235 (O49235) 2,4-D inducible glutathione
S-transferase , complete
Length = 1309
Score = 25.8 bits (55), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (54%)
Frame = -3
Query: 192 LSTLEWKMGLPTPFAYLHYFFTKFCNGSRSETIITKATQH 231
+S L + MGL T F +L +FF +C ++T+ K +
Sbjct: 1028 VSFL*YSMGL*TKFVFLSFFF--YCFTKNAKTVALKKNSY 915
>BP068663
Length = 562
Score = 25.4 bits (54), Expect = 9.1
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2
Query: 7 TPFSLSSLMCH 17
TPFSL SLMCH
Sbjct: 177 TPFSLLSLMCH 145
>TC11620 weakly similar to UP|Q9ZVZ4 (Q9ZVZ4) T25N20.9, partial (17%)
Length = 520
Score = 25.4 bits (54), Expect = 9.1
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 1 MGSYV-GTPFSLSSLMCHEQ 19
+ SY+ GTP L++++CH+Q
Sbjct: 272 LNSYI*GTPILLNTILCHQQ 213
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,640,685
Number of Sequences: 28460
Number of extensions: 66611
Number of successful extensions: 348
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of query: 241
length of database: 4,897,600
effective HSP length: 88
effective length of query: 153
effective length of database: 2,393,120
effective search space: 366147360
effective search space used: 366147360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC146856.7