BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.8 + phase: 0 /partial
(71 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP039896 30 0.087
TC19183 27 0.96
AV780242 26 1.6
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho... 25 2.1
AV776074 25 2.8
BI420942 25 3.6
TC16634 similar to UP|Q84U00 (Q84U00) Ser-thr protein kinase (Fr... 25 3.6
BP038960 24 4.7
TC13905 similar to UP|Q8H1U4 (Q8H1U4) APC5, partial (12%) 24 4.7
TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor ... 24 6.2
BP049980 23 8.1
TC19681 similar to AAQ56809 (AAQ56809) At4g12700, partial (18%) 23 8.1
>BP039896
Length = 551
Score = 30.0 bits (66), Expect = 0.087
Identities = 14/22 (63%), Positives = 15/22 (67%)
Frame = -2
Query: 32 RERKQKNKFVAKKKSKLTRELD 53
RERK KNKF KKK K E+D
Sbjct: 550 RERKPKNKFSVKKKRKGVHEVD 485
>TC19183
Length = 573
Score = 26.6 bits (57), Expect = 0.96
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 30 KIRERKQKNKFVAKKKSKLTRELDIHGIGSSK 61
+I ER+Q++ + + + KL RELD + SSK
Sbjct: 155 EIGEREQESSVLDEAREKLKRELDHYDAESSK 250
>AV780242
Length = 479
Score = 25.8 bits (55), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 16 VWKVDKFVFRKNDWKIRERKQKNK 39
+W K V RK W+IR+R++ +
Sbjct: 40 IWSRRKLVHRKERWEIRKRQRNEE 111
>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
phosphoprotein-like protein, partial (5%)
Length = 789
Score = 25.4 bits (54), Expect = 2.1
Identities = 9/17 (52%), Positives = 10/17 (57%)
Frame = +3
Query: 17 WKVDKFVFRKNDWKIRE 33
WK RK DWK+RE
Sbjct: 426 WKEPNLKMRKEDWKMRE 476
>AV776074
Length = 391
Score = 25.0 bits (53), Expect = 2.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 12 TSCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRE 51
+SC + RK W+ R RKQ+ K + + RE
Sbjct: 38 SSCSITNQAYLSLRKGQWERRRRKQRRKRAEDQPEQGRRE 157
>BI420942
Length = 476
Score = 24.6 bits (52), Expect = 3.6
Identities = 8/22 (36%), Positives = 17/22 (76%)
Frame = -2
Query: 29 WKIRERKQKNKFVAKKKSKLTR 50
WK+RE +++++ + + S+LTR
Sbjct: 226 WKLREEEEEDREIEYRGSRLTR 161
>TC16634 similar to UP|Q84U00 (Q84U00) Ser-thr protein kinase (Fragment),
partial (26%)
Length = 816
Score = 24.6 bits (52), Expect = 3.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 10 IDTSCRVWKVDKFVFRKND 28
IDTSC W+V K K D
Sbjct: 565 IDTSCIYWRVTKIHVHKGD 621
>BP038960
Length = 524
Score = 24.3 bits (51), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +1
Query: 29 WKIRERKQKNKFVAKKKSKLTRE 51
WKIR++K + + KKK K R+
Sbjct: 301 WKIRKKKLQIMMMMKKKKKRRRK 369
>TC13905 similar to UP|Q8H1U4 (Q8H1U4) APC5, partial (12%)
Length = 733
Score = 24.3 bits (51), Expect = 4.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 16 VWKVDKFVFRKNDWKIRERKQKNKF 40
+WK D+ R+++WK ERK + K+
Sbjct: 536 MWKYDE---RESEWKYDERKNE*KY 471
>TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor erythroid 2
related factor 1 (NF-E2 related factor 1) (NFE2-related
factor 1) (Nuclear factor, erythroid derived 2, like 1)
(Transcription factor 11) (Transcription factor HBZ17)
(Transcription factor LCR-F1) (Locus con, partial (3%)
Length = 622
Score = 23.9 bits (50), Expect = 6.2
Identities = 7/8 (87%), Positives = 8/8 (99%)
Frame = -1
Query: 64 FFNSYHCC 71
+FNSYHCC
Sbjct: 316 WFNSYHCC 293
>BP049980
Length = 470
Score = 23.5 bits (49), Expect = 8.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 1 GFTKSEVTVIDTSCRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLT 49
GF K T SC + + WK RER K+K +++S T
Sbjct: 430 GFRKDTSTACWVSCHLRSDGTTMIPSGSWKRRER-IKHKCFTRERSNST 287
>TC19681 similar to AAQ56809 (AAQ56809) At4g12700, partial (18%)
Length = 645
Score = 23.5 bits (49), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 16 VWKVDKFVFRKNDWKIRERK 35
VWK++KF R+ D +R +K
Sbjct: 102 VWKMEKFQGREKDMLMRVKK 43
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,436,116
Number of Sequences: 28460
Number of extensions: 13375
Number of successful extensions: 99
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of query: 71
length of database: 4,897,600
effective HSP length: 47
effective length of query: 24
effective length of database: 3,559,980
effective search space: 85439520
effective search space used: 85439520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)
Medicago: description of AC146853.8