BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.2 - phase: 0 /pseudo
(952 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AU088980 83 2e-16
AV766088 59 3e-09
AV427921 57 1e-08
AV769206 55 7e-08
TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-... 41 8e-04
TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, parti... 41 8e-04
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 41 0.001
AV410378 38 0.007
AV779145 38 0.009
BP033767 37 0.011
BP072816 37 0.015
AV410269 36 0.025
TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, p... 36 0.025
BP030058 36 0.033
TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich... 35 0.043
TC16259 weakly similar to UP|O23300 (O23300) Carnitine racemase ... 35 0.043
TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein (At2g... 35 0.043
TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific... 35 0.056
CB828813 35 0.073
AV407168 35 0.073
>AU088980
Length = 360
Score = 82.8 bits (203), Expect = 2e-16
Identities = 44/120 (36%), Positives = 63/120 (51%)
Frame = +2
Query: 186 NGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHKTINFESPLKVLYHK 245
N ERK R N+ R L+ H+ LP + W A++ A YL+N LP + + P + L +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 246 DPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICRH 305
P+ L+VFG LC+ + KL PR+ KCVFLG+ + GY + L I C H
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMD-LPTTXIXCXH 358
>AV766088
Length = 501
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = -1
Query: 59 ILIFVIHVLLVNMLNCFS*ILIIEVCCHLIFYIVMYGPLQF*VQLVTNIMFFSWIIIQIF 118
I+ FV V L NML C +LI+ + C L FY V+YG L F LV + MF+SW+I +I
Sbjct: 219 IVRFVSLVCLANMLGCHLFLLIMLL*CLLTFYTVIYGLLLFYRPLVIDFMFYSWMISRIS 40
Query: 119 CGLFQCHINPKFI 131
CG F IN +F+
Sbjct: 39 CGRFL*VINLRFL 1
>AV427921
Length = 284
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/87 (33%), Positives = 46/87 (52%)
Frame = +1
Query: 181 YTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHKTINFESPLK 240
YT QNG SERK R+ N++R+LL + LP SF A+ + +++N P + P +
Sbjct: 19 YTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEE 198
Query: 241 VLYHKDPSYNHLRVFGCLCFPLFPSSK 267
+ P+ +H R+ CL + P K
Sbjct: 199 AWSGRQPAVDHFRISRCLAYAHVPDQK 279
>AV769206
Length = 536
Score = 54.7 bits (130), Expect = 7e-08
Identities = 43/134 (32%), Positives = 60/134 (44%)
Frame = -3
Query: 270 KLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFL 329
KL S +CVF+GY NH+GYKCL S +I I + VLF+E+ FPY L + + T
Sbjct: 510 KLSLHSKECVFIGYSINHKGYKCLD-QSGRIYISKDVLFHEHRFPYPSLFPDETTSST-- 340
Query: 330 DNELSPYIIQHLMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPP 389
E P + PI P +S + + T P NPT+ + L
Sbjct: 339 SAEFFPL----------STIPIVSHTTPPALASSGFSSLGSATLPSSFNPTAKL--TLTE 196
Query: 390 IFQPTLQANTKPIT 403
QP + P+T
Sbjct: 195 W*QPLTELTAVPLT 154
>TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-cell
leukemia, homeobox 1), partial (5%)
Length = 1304
Score = 41.2 bits (95), Expect = 8e-04
Identities = 46/159 (28%), Positives = 70/159 (43%), Gaps = 7/159 (4%)
Frame = +2
Query: 325 TYTFLDNELSPYIIQHL-MDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPI 383
T+T L I+QH + + Q+ P P H +H TSP + ++ + P S+ SP
Sbjct: 35 TFTMCKLSLQLQILQHSRLSRPQSNPLQSHPGHA*HHGTSPSTLAHSL-AEPTSSAASPA 211
Query: 384 QQNLPPIFQ----PTLQANTKPITRSQH-GIFKPNQKYYGLHTHVTKSPLP-RNPVSALK 437
PP TLQA + S H + PN H K+P P ++P+ +L
Sbjct: 212 PPPPPPTTSTKSPSTLQAT---LAHSPHSSLNSPNSS----H*TSLKTPSPAQSPLHSLP 370
Query: 438 DPNWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIF 476
P K ++D SL+++ L P PP I +W F
Sbjct: 371 SPTSKP*LSDPIPSLVQS----LPP*PPSNRYI--LWTF 469
>TC7947 similar to UP|Q9ST69 (Q9ST69) Ribosomal protein S5, partial (81%)
Length = 1294
Score = 41.2 bits (95), Expect = 8e-04
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 349 PPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQ 406
P PQP + P+ ++SP P+SP PP +P PP P Q T P T +
Sbjct: 170 PSSPQPPNSPSSLSSPDPSSPPPPPPPSPPNANPPTTLTPPSSTPQTQKKTSPSTHQK 343
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/68 (32%), Positives = 28/68 (40%), Gaps = 9/68 (13%)
Frame = +2
Query: 347 TGPPIPQPAHQPNHITSPCPNSPNITSPPQSNP-----TSPIQQNLPP----IFQPTLQA 397
+ PP P P PN N P +PP S P TSP P + P+ A
Sbjct: 224 SSPPPPPPPSPPN------ANPPTTLTPPSSTPQTQKKTSPSTHQKSPKASSLLLPSTTA 385
Query: 398 NTKPITRS 405
+KP T+S
Sbjct: 386 PSKPRTKS 409
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/101 (29%), Positives = 38/101 (36%)
Frame = +1
Query: 340 HLMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANT 399
H+ T PI QP + P +P P S +P N SPI Q P + PT
Sbjct: 265 HVPTPPSTPSPISQPPYTPTPPKTPSPTSQPPHTPTPPNTPSPISQ---PPYTPTPPKTP 435
Query: 400 KPITRSQHGIFKPNQKYYGLHTHVTKSPLPRNPVSALKDPN 440
P + H PN T SP P+ P + PN
Sbjct: 436 SPTNQPPHIPSPPNSSSPTSQPPNTPSP-PKTPSPTSQPPN 555
Score = 38.5 bits (88), Expect = 0.005
Identities = 39/134 (29%), Positives = 51/134 (37%), Gaps = 10/134 (7%)
Frame = +1
Query: 345 TQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPT-----SPIQQNLPPIFQPTLQANT 399
T T P P P QP +I P P +P+ S P PT SPI Q P + PT
Sbjct: 172 TPTPPKTPSPTSQPPYIPLP-PKTPSPISQPPHVPTPPSTPSPISQ---PPYTPTPPKTP 339
Query: 400 KPITRSQHGIFKPNQKYYGLHTHVT----KSPLPRN-PVSALKDPNWKMAMNDEYNSLIK 454
P ++ H PN T K+P P N P PN + N+
Sbjct: 340 SPTSQPPHTPTPPNTPSPISQPPYTPTPPKTPSPTNQPPHIPSPPNSSSPTSQPPNTPSP 519
Query: 455 NKTWDLVPRPPDVN 468
KT +PP+ +
Sbjct: 520 PKTPSPTSQPPNTH 561
Score = 34.3 bits (77), Expect = 0.095
Identities = 27/95 (28%), Positives = 38/95 (39%), Gaps = 7/95 (7%)
Frame = +1
Query: 347 TGPPIPQPAHQPNH------ITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTK 400
T P P P +QP H SP + PN+ SPP+ +P N PP + PT
Sbjct: 34 TPPKTPSPGNQPPHTPIPPKTPSPSYSPPNVPSPPK----APSPNNHPP-YTPTPPKTPS 198
Query: 401 PITRSQHGIFKP-NQKYYGLHTHVTKSPLPRNPVS 434
P ++ + P HV P +P+S
Sbjct: 199 PTSQPPYIPLPPKTPSPISQPPHVPTPPSTPSPIS 303
Score = 31.2 bits (69), Expect = 0.81
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +1
Query: 345 TQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPT---SPIQQNLPPIFQPTLQANTKP 401
T P P P++ P ++ SP P +P+ + P PT +P + PP + P P
Sbjct: 76 TPIPPKTPSPSYSPPNVPSP-PKAPSPNNHPPYTPTPPKTPSPTSQPP-YIPLPPKTPSP 249
Query: 402 ITRSQHGIFKPNQKYYGLHTHVTKSPLPRNPVSALKDPN 440
I++ H P+ T +P P+ P + P+
Sbjct: 250 ISQPPHVPTPPSTPSPISQPPYTPTP-PKTPSPTSQPPH 363
>AV410378
Length = 358
Score = 38.1 bits (87), Expect = 0.007
Identities = 19/56 (33%), Positives = 27/56 (47%)
Frame = +1
Query: 411 KPNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPRPPD 466
K Y ++T P A+K W+ AM+ E +L +N TW LV +PPD
Sbjct: 187 KLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPD 354
>AV779145
Length = 417
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +2
Query: 347 TGPPIPQPAHQPNHITSPCPNS---PNITSPPQSNPTSPIQQNLPPIFQP 393
T P P P P H T+P S P TSPP ++P SP N PP P
Sbjct: 110 TTQPTPSPHGTPPHATAPGTASLAAPAATSPPLTSPLSPSPANSPPTPSP 259
Score = 32.3 bits (72), Expect = 0.36
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 347 TGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTS 381
T P P PA+ P P P+ P+++SPP +PT+
Sbjct: 209 TSPLSPSPANSP-----PTPSPPSLSSPPSPSPTT 298
Score = 28.9 bits (63), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 349 PPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPP 389
P +P P QP + P P ++ SPP ++ TSP + P
Sbjct: 270 PLLPLPRRQPG-VLRPHPTLVSLPSPPFASSTSPTTSSTAP 389
>BP033767
Length = 541
Score = 37.4 bits (85), Expect = 0.011
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +3
Query: 318 LHIPQPNTYTFLDNELSPYIIQHLMDQ--TQTGPPIPQPAHQPNHITSPCPNSPNITSPP 375
LH+ L +E P I + ++ Q TQ P QP + P SP P+ PN P
Sbjct: 78 LHLSHLAPLQLLSSE--PIINRRILHQPFTQGSLPPSQPPNPPP--PSPSPSPPNPKYPF 245
Query: 376 QSNPTSPIQQNLPPIFQPTLQANTKPITRSQHGIFKPN 413
S PT+ QN F PT + P + S F N
Sbjct: 246 SSTPTTTTTQNASTPFFPTYPSPPPPPSPSSFASFPAN 359
Score = 34.3 bits (77), Expect = 0.095
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Frame = +1
Query: 338 IQHLMDQTQTGPPIPQPA--HQPNHITSPCPN--------SPNITSPPQSNPTSPIQQNL 387
+ HL Q PP PQP P H++SP + P+ SPP S P+S ++
Sbjct: 214 LPHLQTQNTHFPPPPQPPPPKMPPHLSSPHTHLHHHLLLPPPSPPSPPTSPPSSSLK--- 384
Query: 388 PPIFQPTLQANTKPITRS 405
PP P ++ P+ S
Sbjct: 385 PPNPNPPTSSSASPLPPS 438
>BP072816
Length = 492
Score = 37.0 bits (84), Expect = 0.015
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 7/69 (10%)
Frame = +1
Query: 345 TQTGPPIP-QPAHQPNHITS---PCPNSPNITSPPQSNPTS-PIQQNLPPIFQPTLQANT 399
T PP+ QP H P+ +S P P+ P P ++P+S P PP PT ANT
Sbjct: 73 THHNPPLSHQPCHSPSSSSSSSSPLPSPPTTLHAPSTSPSSAPSATAAPPPSTPTPAANT 252
Query: 400 --KPITRSQ 406
KP T S+
Sbjct: 253 SSKPSTSSK 279
>AV410269
Length = 430
Score = 36.2 bits (82), Expect = 0.025
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Frame = +2
Query: 349 PPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQHG 408
PP P P + + I+SP P SP SPP S+P P TL I
Sbjct: 23 PPCPFPPNHSSSISSPLPPSP--FSPPSSSPV--------PTMTTTLLLLLFQI------ 154
Query: 409 IFKPNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEY-NSLIKNKTWDLVPRPPDV 467
+Y+ LH T S +P PNW + + +SL+ WDL+ P V
Sbjct: 155 ------QYHHLHHPFTPSMPVTDPEPRKYGPNWNSVGDSSWPHSLV---FWDLLLEPLVV 307
Query: 468 NVI 470
V+
Sbjct: 308 LVV 316
>TC15164 similar to UP|Q9ZTK7 (Q9ZTK7) CONSTANS-like protein 2, partial
(57%)
Length = 1185
Score = 36.2 bits (82), Expect = 0.025
Identities = 29/133 (21%), Positives = 51/133 (37%), Gaps = 1/133 (0%)
Frame = +2
Query: 335 PYIIQHLMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPT 394
P + L ++ + PP P PA +P P++ +T+ SP N P + T
Sbjct: 206 PATLASLSARSASKPPPPSPAR-----LTPLPSASPVTTTSTPPTPSPAATNASPSRRST 370
Query: 395 LQANTKPITRSQHGIFKPNQKYYGLHTHVTKSPLPRNPVSA-LKDPNWKMAMNDEYNSLI 453
T P + + + P K L + P P+ P+S L P K + + +
Sbjct: 371 TTTTTPPTSPTPMLLTSPPMKLKPLPGYFLPLPTPKAPISTPLTTPTPKSTPSSSISPKL 550
Query: 454 KNKTWDLVPRPPD 466
++ P P +
Sbjct: 551 TRQSITAPPPPTE 589
>BP030058
Length = 455
Score = 35.8 bits (81), Expect = 0.033
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 6/75 (8%)
Frame = -1
Query: 349 PPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQHG 408
PP P P+ P PCP+ P PP +P P + PP P+ N P++
Sbjct: 410 PPPPPPSPSPPPPPLPCPSPP----PPPPSPPPPPPPSPPPPKYPSCPQNCNPLSPPPPR 243
Query: 409 IF------KPNQKYY 417
I KP+ YY
Sbjct: 242 IIYVPGQPKPSWIYY 198
>TC15560 similar to SP|Q03173|NDPP_MOUSE NPC derived proline rich protein 1
(NDPP-1). {Mus musculus;}, partial (8%)
Length = 1134
Score = 35.4 bits (80), Expect = 0.043
Identities = 32/104 (30%), Positives = 42/104 (39%), Gaps = 15/104 (14%)
Frame = +3
Query: 349 PPIPQPAHQ--PNHITSPCPNS--PNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITR 404
PP+P P P+H+ SP P+S P T PPQ P+ ++ P QP A + T
Sbjct: 201 PPLPPPQAPPLPSHLPSPEPSSTMPPSTPPPQPTKPCPLPKSTPS--QPPSSAPHRVPTS 374
Query: 405 SQHGIFKPNQKYYGLHTHV-----------TKSPLPRNPVSALK 437
S + P G H+ T SP NP A K
Sbjct: 375 S--SLASPTSPSSGPHSTTMAAPFSSTRTSTPSPNSNNPTPASK 500
>TC16259 weakly similar to UP|O23300 (O23300) Carnitine racemase like
protein (At4g14440), partial (75%)
Length = 910
Score = 35.4 bits (80), Expect = 0.043
Identities = 20/63 (31%), Positives = 29/63 (45%)
Frame = -2
Query: 320 IPQPNTYTFLDNELSPYIIQHLMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNP 379
IP+PNT ++ LS + + Q PP P P P+SP +P Q +P
Sbjct: 687 IPKPNTLLDTNSSLSLHTLPPPTSSAQAPPPTASP---------PPPSSPRHRAPSQQSP 535
Query: 380 TSP 382
+SP
Sbjct: 534 SSP 526
>TC14463 similar to UP|Q9SLF1 (Q9SLF1) Nodulin-like protein
(At2g16660/T24I21.7), partial (40%)
Length = 1122
Score = 35.4 bits (80), Expect = 0.043
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 352 PQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQHG 408
P PA T+P P++P+ TSP S+ TSP +L +P++ + P T S G
Sbjct: 182 PSPATTTPSPTTPTPSNPSCTSPSSSSTTSP---SLKTSVKPSVSSPASPPTSSPLG 343
>TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific
extensin-like protein precursor (PELP), partial (11%)
Length = 630
Score = 35.0 bits (79), Expect = 0.056
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Frame = +2
Query: 349 PPIPQPAHQPNHITSPCPNSPNIT--------------SPPQSNPTSPIQQNLPPIFQPT 394
P +P P P+ + P P++P +T PP P+ PI ++ PP F P
Sbjct: 131 PSVPAP---PSPVKPPTPSTPAVTVPTPPLVKAPTPPPQPPVKAPSPPIVKS-PPYFPPP 298
Query: 395 LQANTKPITRS 405
++A + PI +S
Sbjct: 299 VKAPSPPIVKS 331
Score = 30.0 bits (66), Expect = 1.8
Identities = 29/132 (21%), Positives = 52/132 (38%), Gaps = 16/132 (12%)
Frame = +2
Query: 290 YKCLGLLSNKIIICRHVLFNEN----IFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQT 345
+K + LLS +++ V ++ + YA +P P + +P +
Sbjct: 35 FKAILLLSIFLVVSTKVFSHDEDLKIVVNYAIPSVPAPPSPVKPPTPSTPAVTVPTPPLV 214
Query: 346 QTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQN------------LPPIFQP 393
+ P PQP + + P SP PP P+ PI ++ PP + P
Sbjct: 215 KAPTPPPQPPVKAP--SPPIVKSPPYFPPPVKAPSPPIVKSPPVKAPTPPIVKSPPSYPP 388
Query: 394 TLQANTKPITRS 405
++A + PI +S
Sbjct: 389 PVKAPSPPIVKS 424
>CB828813
Length = 465
Score = 34.7 bits (78), Expect = 0.073
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 345 TQTGPPIPQPAHQ-PNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPIT 403
T TGPP P P+ P+H T +SPN T Q P+ P+L +
Sbjct: 107 TTTGPP*PPPSIG*PHHQT*LLRSSPNRTQLAQQRPS-----------PPSLHHHHHHHH 253
Query: 404 RSQHGIFKPNQKYYGLHTHVTKSPLPRNPVS 434
+ QH + +P + + LH P+ R P S
Sbjct: 254 QRQHELPQPPNRQFRLHRRPILLPVARPPCS 346
>AV407168
Length = 228
Score = 34.7 bits (78), Expect = 0.073
Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +1
Query: 342 MDQTQTGPPIPQPAHQPNHIT-SPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANT 399
+ +T PP P H P+ I P P+SP+ + PP P SP + P P +++T
Sbjct: 49 LSKTPPPPPHSPPPHPPHWIP*PPIPSSPHSSHPPSPPPHSPPPLSPPAPLPPPPRSST 225
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.337 0.147 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,688,536
Number of Sequences: 28460
Number of extensions: 367805
Number of successful extensions: 4769
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 4120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4541
length of query: 952
length of database: 4,897,600
effective HSP length: 99
effective length of query: 853
effective length of database: 2,080,060
effective search space: 1774291180
effective search space used: 1774291180
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146853.2