TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146842.3 + phase: 0 /pseudo
         (57 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylas...    73  1e-14
BP064229                                                               27  1.1
AV773511                                                               25  2.4
TC16898                                                                25  4.0
TC17793 similar to UP|Q9FH76 (Q9FH76) Cytochrome P450 (AT5g45340...    24  5.3
TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial ...    24  6.9
BP035370                                                               24  6.9
TC10202 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein ...    24  6.9
AV409699                                                               23  9.0
TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Ar...    23  9.0
TC8887                                                                 23  9.0
BP059339                                                               23  9.0

>TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylase 1  (GAD
           1) , partial (89%)
          Length = 1826

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 32/37 (86%), Positives = 32/37 (86%)
 Frame = +3

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 825 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 935


>BP064229 
          Length = 484

 Score = 26.6 bits (57), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (51%)
 Frame = +3

Query: 5   PVTMDLHAPTSSFPYKMLEWDFRLPLVKSINVSGHK 40
           P+   LH P SSFP  +   +  L L+ SI  S H+
Sbjct: 333 PIFQILHYPASSFP-SLQSANHHLTLLNSIRCSNHR 437


>AV773511 
          Length = 463

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 3   KYPVTMDLHAPTSSFPYKMLEWDFRLPLV 31
           KYPV +D H  ++   + ++  +FR+P++
Sbjct: 192 KYPVEIDSHTHST*LSHILIRIEFRVPIL 106


>TC16898 
          Length = 564

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 24  WDFRLPLVKSINVSG 38
           WD ++PL K+INV G
Sbjct: 349 WD*QIPLFKTINVEG 305


>TC17793 similar to UP|Q9FH76 (Q9FH76) Cytochrome P450 (AT5g45340/K9E15_12),
           partial (14%)
          Length = 881

 Score = 24.3 bits (51), Expect = 5.3
 Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
 Frame = +2

Query: 1   MAKYPVTMDLHAPTSSFPYKMLEWDFR-LPLVKSINVSGHKYGLFYIGIGWVIWCSRR 57
           +AK  + + LH  T+ +        FR +P  K  NVS  K+  +Y G+G  +W  +R
Sbjct: 293 LAKLEILVLLHHLTTKYRLVTKT*LFRHVPN*KVYNVSCSKWCCYYFGVGG-LWLGQR 463


>TC11992 similar to UP|Q9QY28 (Q9QY28) Espin (Fragment), partial (4%)
          Length = 560

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 35  NVSGHKYGLFYIGIGWVIWCS 55
           N S H Y L +  + W +W S
Sbjct: 115 NTSSHTYQLLHQNLEWKLWIS 177


>BP035370 
          Length = 563

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -1

Query: 8   MDLHAPTSSFPYKMLEWDFRLPLV 31
           + +HAPT S P+ +LE     PLV
Sbjct: 338 LQIHAPTRSEPFTVLEEKKVQPLV 267


>TC10202 similar to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
           partial (60%)
          Length = 664

 Score = 23.9 bits (50), Expect = 6.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 17  FPYKMLEWDFRLPLVKSINV 36
           F   ++ WD + P+VK +N+
Sbjct: 662 FMKSLMPWDSQFPMVKELNI 603


>AV409699 
          Length = 346

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 24  WDFRLPLVKSINVSGHKYGLFYIGIG-WVI 52
           W  R  ++K++ +  H++G+  +G+G W I
Sbjct: 238 WKRRRAMMKALLLLWHRFGMMGMGVGLWKI 327


>TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
           thaliana;}, partial (39%)
          Length = 527

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 4   YPVTMDLHAPTSSFPYKMLEWDFRL 28
           YP +M  H P  SFP  ++  D  +
Sbjct: 156 YPASMT*HGPN*SFPLSIIHVDIAI 82


>TC8887 
          Length = 674

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (71%)
 Frame = +1

Query: 36  VSGHKYGLFYIGIGWVIW 53
           + G+   LF IG+GW+I+
Sbjct: 121 ICGNLKDLFTIGLGWIIF 174


>BP059339 
          Length = 246

 Score = 23.5 bits (49), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 3   KYPVTMDLHAPTSSFPYKMLEWDFR 27
           ++P+   LHA  SSF +    W F+
Sbjct: 135 RFPMHHPLHASPSSFSFHQHFWQFQ 209


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.143    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,372,439
Number of Sequences: 28460
Number of extensions: 16837
Number of successful extensions: 131
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of query: 57
length of database: 4,897,600
effective HSP length: 33
effective length of query: 24
effective length of database: 3,958,420
effective search space: 95002080
effective search space used: 95002080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)