BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146842.1 + phase: 0
(216 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12162 similar to AAS09999 (AAS09999) MYB transcription factor,... 95 8e-21
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 76 4e-15
TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 72 1e-13
TC14128 similar to AAS09980 (AAS09980) MYB transcription factor,... 71 2e-13
TC9473 similar to AAS09986 (AAS09986) MYB transcription factor, ... 68 1e-12
TC15728 similar to AAS09986 (AAS09986) MYB transcription factor,... 65 7e-12
AW428883 65 9e-12
TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription fa... 49 7e-07
TC19088 homologue to UP|Q8S8Z9 (Q8S8Z9) Syringolide-induced prot... 48 1e-06
AU252156 46 4e-06
TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose... 38 0.002
TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 38 0.002
TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase ... 37 0.003
TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%) 34 0.022
AV417320 32 0.085
TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and sucros... 32 0.11
NP675421 transcription factor MYB103 [Lotus japonicus] 30 0.32
CB828404 30 0.42
TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, ... 29 0.72
TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete 29 0.72
>TC12162 similar to AAS09999 (AAS09999) MYB transcription factor, partial
(56%)
Length = 751
Score = 95.1 bits (235), Expect = 8e-21
Identities = 63/177 (35%), Positives = 94/177 (52%), Gaps = 23/177 (12%)
Frame = +1
Query: 7 DGKSKEWTWDENKIFETILFEYLEEVQEGRWENIG-LVCGRSSTEVKEHYETLLHDLALI 65
+ K +WT ENK+FE L Y ++ RW + ++ G++ +V + Y+ L D+ +I
Sbjct: 226 ESKGAKWTPQENKLFENAL-AYFDKDTPDRWLRVASMIPGKTVGDVIKQYKELEEDVCVI 402
Query: 66 EEGLVDF-STNSDDFIISKASTDENK--------------------APPTKNKTKKVVRV 104
E GLV +D F + A+ + P++ + KK V
Sbjct: 403 EAGLVPVPGYGADSFTLEWANNHQGYDIDDGFKQFYSVGGKRGASCTRPSEQERKKGVP- 579
Query: 105 KHWTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKK 160
WTEEEHRLFL G++ +GKG W+ IS++ V TRT +QVASHAQK+F+ QL G K
Sbjct: 580 --WTEEEHRLFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDK 744
>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(44%)
Length = 1500
Score = 76.3 bits (186), Expect = 4e-15
Identities = 43/103 (41%), Positives = 69/103 (66%), Gaps = 3/103 (2%)
Frame = +2
Query: 73 STNSDDFIISKASTDENKAPPTKNKTKKVVRVKH--WTEEEHRLFLEGIEIHGKGKWKLI 130
++N+ D I + ++ +N APP+ K + R + WTEEEH+LFL G++ GKG W+ I
Sbjct: 263 NSNNKDVIAADYASADNAAPPSSGKQRDRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGI 442
Query: 131 SQ-HVRTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFYITS 172
S+ +V+TRT +QVASHAQK+FL + + ++ ++ S F IT+
Sbjct: 443 SRNYVKTRTPTQVASHAQKYFLRRSNLNRRR--RRSSLFDITT 565
>TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(40%)
Length = 601
Score = 71.6 bits (174), Expect = 1e-13
Identities = 41/101 (40%), Positives = 65/101 (63%), Gaps = 1/101 (0%)
Frame = +3
Query: 73 STNSDDFIISKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQ 132
++N+ D I + ++ +N APP+ WTEEEH+LFL G++ GKG W+ IS+
Sbjct: 261 NSNNKDVIAADYASADNAAPPSSGVP--------WTEEEHKLFLVGLQKVGKGDWRGISR 416
Query: 133 -HVRTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFYITS 172
+V+TRT +QVASHAQK+FL + + ++ ++ S F IT+
Sbjct: 417 NYVKTRTPTQVASHAQKYFLRRSNLNRRR--RRSSLFDITT 533
>TC14128 similar to AAS09980 (AAS09980) MYB transcription factor, partial
(36%)
Length = 423
Score = 70.9 bits (172), Expect = 2e-13
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +1
Query: 75 NSDDFIISKASTDENKAP-PTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQH 133
N+ + AS DE AP P K R WTEEEH+LFL G++ GKG W+ IS++
Sbjct: 166 NNKEHAAGYASADEAPAPLPVKLANPDRKRGVPWTEEEHKLFLLGLQKVGKGDWRGISKN 345
Query: 134 -VRTRTASQVASHAQKHFLHQLDGT 157
V+TRT++QVASHAQK+FL + + T
Sbjct: 346 FVKTRTSTQVASHAQKYFLRRANLT 420
>TC9473 similar to AAS09986 (AAS09986) MYB transcription factor, partial
(50%)
Length = 887
Score = 67.8 bits (164), Expect = 1e-12
Identities = 39/112 (34%), Positives = 70/112 (61%), Gaps = 3/112 (2%)
Frame = +3
Query: 88 ENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQ-HVRTRTASQVASHA 146
E+ P + + +++ + WTEEEHR+FL G++ GKG W+ I++ +V +RT +QVASHA
Sbjct: 423 EDFVPGSSSSSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHA 602
Query: 147 QKHFLHQLDGTSKKTYKKRSNFYITSLKGNSKPLLNKDNIPSP--STSWDGN 196
QK+F+ Q + + +K ++ S F I + + P++ +D + + T +GN
Sbjct: 603 QKYFIRQSNVSRRK--RRSSLFDIVADDASDTPMVEQDFLSANQLQTETEGN 752
>TC15728 similar to AAS09986 (AAS09986) MYB transcription factor, partial
(34%)
Length = 1207
Score = 65.5 bits (158), Expect = 7e-12
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Frame = +1
Query: 85 STDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVA 143
++D+ P + + +K R WTEEEH+LFL G+ GKG W+ IS++ V+TRT +QVA
Sbjct: 403 ASDDVVHPSARARDRK--RGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVA 576
Query: 144 SHAQKHFLHQLDGTSKKTYKKRSNFY--ITSLKGNSKPLLNKD----NIPSPSTSWDGNF 197
SHAQK+FL + + + ++RS+ + T S ++ ++ + P+TS +
Sbjct: 577 SHAQKYFLRRHNHNRR---RRRSSLFDITTDTVMESSTIMEEEQDQQEMVPPATS--AVY 741
Query: 198 HPLLYKDNYVPALP 211
PL Y + PA P
Sbjct: 742 PPLHYGGFHGPAFP 783
>AW428883
Length = 430
Score = 65.1 bits (157), Expect = 9e-12
Identities = 37/69 (53%), Positives = 54/69 (77%), Gaps = 2/69 (2%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH-VRTRTASQVASHAQKHFLHQLDGTSKKTYKKR 165
WTEEEHRLFL G++ +GKG W+ IS++ V TRT +QVASHAQK+F+ +L+ +K ++R
Sbjct: 139 WTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFI-RLNSMNKD--RRR 309
Query: 166 SNFY-ITSL 173
S+ + ITS+
Sbjct: 310 SSIHDITSV 336
>TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription factor,
partial (32%)
Length = 664
Score = 48.9 bits (115), Expect = 7e-07
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +3
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQVASHAQKHFLH-QLDGTSK 159
WTE+EH FLE +++ + WK I + ++T Q+ SHAQK+FL Q +GTS+
Sbjct: 249 WTEQEHDKFLEALQLFDRD-WKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSE 407
>TC19088 homologue to UP|Q8S8Z9 (Q8S8Z9) Syringolide-induced protein 1-3-1B,
partial (26%)
Length = 353
Score = 48.1 bits (113), Expect = 1e-06
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 12 EWTWDENKIFETILFEYLEEVQEGRWENIG-LVCGRSSTEVKEHYETLLHDLALIEEG 68
+WT +K+FE L E++ + RWE I V G+S+ EV+EHYE L+HD+ I+ G
Sbjct: 180 QWTRYHDKLFERALLAVPEDLPD-RWEKIAEQVPGKSAAEVREHYEALVHDVFEIDSG 350
>AU252156
Length = 350
Score = 46.2 bits (108), Expect = 4e-06
Identities = 26/62 (41%), Positives = 36/62 (57%), Gaps = 1/62 (1%)
Frame = +2
Query: 10 SKEWTWDENKIFETILFEYLEEVQEGRWENIG-LVCGRSSTEVKEHYETLLHDLALIEEG 68
S W+ +NK FE L Y ++V RW N+ V G++ EVK+HYE L+ D+ IE G
Sbjct: 155 SGSWSAKDNKAFERALAVY-DKVTPDRWYNVAHAVGGKTPEEVKKHYELLVQDVKQIESG 331
Query: 69 LV 70
V
Sbjct: 332 QV 337
>TC17948 similar to UP|Q9FZ13 (Q9FZ13) Tuber-specific and sucrose-responsive
element binding factor, partial (50%)
Length = 487
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/67 (32%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Frame = +2
Query: 73 STNSDDFIISKASTDENKAPPTKNKTKKVVRVKH-WTEEEHRLFLEGIEIHGKGKWKLIS 131
+T+S D S+D N P N + R+K W+ EE R+ +E HG W LIS
Sbjct: 95 TTSSSD----SCSSDSN---PRSNNPNRPERIKGPWSAEEDRILTRLVERHGARNWSLIS 253
Query: 132 QHVRTRT 138
++++ R+
Sbjct: 254 RYIKGRS 274
>TC14127 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(21%)
Length = 556
Score = 37.7 bits (86), Expect = 0.002
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 107 WTEEEHRLFLEGIEIHGKGKWK 128
WTEEEH+LFL G++ GKG W+
Sbjct: 485 WTEEEHKLFLVGLQKVGKGDWR 550
>TC12403 similar to UP|Q8L8G6 (Q8L8G6) Histone acetyltransferase complex
component, partial (19%)
Length = 444
Score = 37.0 bits (84), Expect = 0.003
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQVASH 145
W +E L LEGI +G G W ++++V T++ +Q H
Sbjct: 325 WNADEEMLLLEGIGTYGFGNWSEVAEYVGTKSKAQCIDH 441
>TC10378 similar to UP|Q84TG2 (Q84TG2) At3g16350, partial (26%)
Length = 442
Score = 33.9 bits (76), Expect = 0.022
Identities = 14/19 (73%), Positives = 16/19 (83%)
Frame = +2
Query: 107 WTEEEHRLFLEGIEIHGKG 125
WTEEEHRLFL G++ GKG
Sbjct: 383 WTEEEHRLFLIGLQKLGKG 439
>AV417320
Length = 369
Score = 32.0 bits (71), Expect = 0.085
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQH 133
WT EE ++ + I+ HG G W+ + +H
Sbjct: 126 WTSEEDQILISYIQKHGHGNWRALPKH 206
>TC9457 homologue to UP|Q9FZ15 (Q9FZ15) Tuber-specific and
sucrose-responsive element binding factor, partial (43%)
Length = 860
Score = 31.6 bits (70), Expect = 0.11
Identities = 25/102 (24%), Positives = 46/102 (44%), Gaps = 10/102 (9%)
Frame = +3
Query: 80 IISKASTDENKAPPTKNKTKKVVRVKH-WTEEEHRLFLEGIEIHGKGKWKLISQHV---- 134
+++K +T+ N T K+ R+K W+ EE +E HG W LIS+ +
Sbjct: 15 LVTKMNTNTN----TNTSITKMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRS 182
Query: 135 ----RTRTASQVASHAQ-KHFLHQLDGTSKKTYKKRSNFYIT 171
R R +Q++ + + F + D T + + + N + T
Sbjct: 183 GKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFGNKWAT 308
>NP675421 transcription factor MYB103 [Lotus japonicus]
Length = 924
Score = 30.0 bits (66), Expect = 0.32
Identities = 9/26 (34%), Positives = 18/26 (68%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQ 132
W++EE ++ ++ I+ HG G W+ + Q
Sbjct: 49 WSQEEDKVLVDYIQKHGHGSWRALPQ 126
>CB828404
Length = 551
Score = 29.6 bits (65), Expect = 0.42
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 73 STNSDDFI-----ISKASTDENKAPPTKNKTKKVVRVKHWTEEEHRLFLEGIE 120
+TNSD+F + S+ P + + +++ + WT+E+H ++++ IE
Sbjct: 38 TTNSDEFTHLPHRVHVPSSYSTTDPFMDKQMQGIMQTEEWTDEKHSMYIKSIE 196
>TC8172 similar to AAS10008 (AAS10008) MYB transcription factor, partial
(30%)
Length = 1353
Score = 28.9 bits (63), Expect = 0.72
Identities = 28/113 (24%), Positives = 40/113 (34%), Gaps = 3/113 (2%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLISQHVRTRTASQVASHAQKHFLHQLDGTSKKTYKK-- 164
WT EE G++ +G GKWK I + F L S K
Sbjct: 121 WTAEEEDALHRGVQKYGAGKWKNILK--------------DPEFAPSLTSRSNIDLKDKW 258
Query: 165 RSNFYITSLKGNSKPLLNKDNIPSPSTSWDGNFHPLLYKDNY-VPALPSPHLN 216
R+ +T N K +K + +PST + N P +P+P N
Sbjct: 259 RNLNVVTGQGSNIKSRTSKPKLTAPSTPVPNQQNATPSVQNVATPKVPTPSQN 417
>TC11120 UP|Q84PP4 (Q84PP4) Transcription factor MYB102, complete
Length = 1281
Score = 28.9 bits (63), Expect = 0.72
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1
Query: 107 WTEEEHRLFLEGIEIHGKGKWKLI 130
WT EE + +E I+ HG G W+ +
Sbjct: 115 WTPEEDQKLVEHIQKHGHGSWRAL 186
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.312 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,361,951
Number of Sequences: 28460
Number of extensions: 60942
Number of successful extensions: 303
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of query: 216
length of database: 4,897,600
effective HSP length: 86
effective length of query: 130
effective length of database: 2,450,040
effective search space: 318505200
effective search space used: 318505200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146842.1