TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146819.13 + phase: 0 
         (97 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP055416                                                               33  0.008
TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partia...    33  0.011
AV421748                                                               25  1.7
BP043842                                                               24  3.8
BP075797                                                               23  8.4
TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Ara...    23  8.4

>BP055416 
          Length = 500

 Score = 33.1 bits (74), Expect = 0.008
 Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 4/56 (7%)
 Frame = -2

Query: 34  FDLILMARIMPVMDGITATKKLRDLEYPG----QIVGVSRHLTNDEYAEFCNAGLD 85
           +DL+LM   MP MDG  ATK++R  E        IV ++ H  + + A+    G+D
Sbjct: 394 YDLVLMDCQMPKMDGYEATKEIRKSEVGTGLHIPIVALTAHAMSCDEAKCLGVGMD 227


>TC13528 similar to UP|Q9SXL4 (Q9SXL4) Histidine kinase 1, partial (6%)
          Length = 520

 Score = 32.7 bits (73), Expect = 0.011
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 34 FDLILMARIMPVMDGITATKKLRDLEYPG----QIVGVSRHLTNDEYAEFCNAGLD 85
          +DLILM   MP MDG  ATK +R  E        IV ++ H  + + A+    G+D
Sbjct: 21 YDLILMDCQMPKMDGYEATKAIRKSEEGTALHIPIVALTAHAMSCDEAQCLQVGMD 188


>AV421748 
          Length = 376

 Score = 25.4 bits (54), Expect = 1.7
 Identities = 17/66 (25%), Positives = 26/66 (38%), Gaps = 4/66 (6%)
 Frame = -1

Query: 9   DIGVETHAVKNGKESLDLISTVERKFDLILMARI----MPVMDGITATKKLRDLEYPGQI 64
           ++ V+    +  KE   L+  V     ++  A      + V DG+    K RDL   G  
Sbjct: 250 EVVVDRDRARGAKELCFLVVAVRGSTRVVNCANAAVGKLEVADGVVVVAKCRDLGVDGDT 71

Query: 65  VGVSRH 70
            GV  H
Sbjct: 70  SGVDLH 53


>BP043842 
          Length = 490

 Score = 24.3 bits (51), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (60%)
 Frame = +3

Query: 64  IVGVSRHLTNDEYAEFCNAGLDDLHH 89
           +VGV  H+T  ++ +FC +    +HH
Sbjct: 117 VVGVPNHMTYADFCQFCGS---FIHH 185


>BP075797 
          Length = 504

 Score = 23.1 bits (48), Expect = 8.4
 Identities = 11/16 (68%), Positives = 12/16 (74%)
 Frame = +3

Query: 52  TKKLRDLEYPGQIVGV 67
           TK L  L+Y GQIVGV
Sbjct: 234 TKVLAILDYGGQIVGV 281


>TC8891 similar to GB|AAP68279.1|31711846|BT008840 At1g72680 {Arabidopsis
           thaliana;} , complete
          Length = 1636

 Score = 23.1 bits (48), Expect = 8.4
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +1

Query: 62  GQIVGVSRHLTNDEYAEFCNAGLDDLHH 89
           G  VGV  ++ +    EFC+ GL+  HH
Sbjct: 355 GDHVGVGTYVNSCRDCEFCDDGLE--HH 432


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,430,616
Number of Sequences: 28460
Number of extensions: 11666
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of query: 97
length of database: 4,897,600
effective HSP length: 73
effective length of query: 24
effective length of database: 2,820,020
effective search space: 67680480
effective search space used: 67680480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)