BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146819.11 - phase: 0
(316 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18419 171 1e-43
AV414308 45 1e-05
BP030058 45 2e-05
AU251550 44 5e-05
BI420016 42 1e-04
CB829398 42 2e-04
BP043764 42 2e-04
TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE... 42 2e-04
AV427333 41 2e-04
AU240151 41 2e-04
TC11470 41 2e-04
TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%) 40 4e-04
AW428673 40 5e-04
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 40 7e-04
TC13505 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, par... 40 7e-04
TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment),... 39 9e-04
AV415539 39 9e-04
TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY ... 39 0.001
TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like ... 39 0.001
TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ... 39 0.002
>TC18419
Length = 409
Score = 171 bits (433), Expect = 1e-43
Identities = 89/133 (66%), Positives = 97/133 (72%), Gaps = 6/133 (4%)
Frame = +1
Query: 1 MEDSGEIYDGVRAEFPLSFGKQSKSQTPLETIHKATRRSVPTSNPKTTSDDFP----SKE 56
ME+ GEIYDG RA+FPLSFGKQSKSQTPLE IH ATRRS N KTT+D P SKE
Sbjct: 25 MEEDGEIYDGARAQFPLSFGKQSKSQTPLEAIHNATRRS----NSKTTTDFPPVSSSSKE 192
Query: 57 CLHSIRPPKNPNPPSPPLQ--DDSPLVGPPPPPPHHEADDDDGEMIGPPPPPPGSNFNDS 114
L S+RP KNP P PP Q DD PLVGPPPPPP + DDDGEM GP PP P SNFNDS
Sbjct: 193 WLSSLRPSKNPTAPPPPEQEDDDGPLVGPPPPPPSEQQPDDDGEMFGPSPPTPASNFNDS 372
Query: 115 EDEDNDSDQDELG 127
D + DSDQD++G
Sbjct: 373 -DSEQDSDQDDVG 408
>AV414308
Length = 389
Score = 45.4 bits (106), Expect = 1e-05
Identities = 28/92 (30%), Positives = 37/92 (39%), Gaps = 6/92 (6%)
Frame = +3
Query: 25 SQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPP 84
S P+ + + S +SNP T+ P K+ S + NPPSPP + GP
Sbjct: 36 SSNPIHSTLPWRKNSKSSSNPTPTTGATPQKKSTTSNKESLLQNPPSPPPEASPSSPGPG 215
Query: 85 PPPPHHEADDDDGEMI------GPPPPPPGSN 110
PPP H A GP PP S+
Sbjct: 216 SPPPPHHAPSSSWSTATATTSPGPSKPPQSSS 311
>BP030058
Length = 455
Score = 45.1 bits (105), Expect = 2e-05
Identities = 22/47 (46%), Positives = 24/47 (50%)
Frame = -1
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPPGS 109
PP +P+PP PPL P PPPPPP PPPPPP S
Sbjct: 401 PPPSPSPPPPPL----PCPSPPPPPP------------SPPPPPPPS 309
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/65 (30%), Positives = 26/65 (39%)
Frame = -1
Query: 41 PTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMI 100
P P + S P C PP +P PP P P PPPP + + + +
Sbjct: 410 PPPPPPSPSPPPPPLPCPSPPPPPPSPPPPPP----------PSPPPPKYPSCPQNCNPL 261
Query: 101 GPPPP 105
PPPP
Sbjct: 260 SPPPP 246
Score = 26.9 bits (58), Expect = 4.5
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 68 NPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
+PP PP P PPPPP + P PPPP
Sbjct: 413 DPPPPP-----PSPSPPPPP-----------LPCPSPPPP 342
>AU251550
Length = 329
Score = 43.5 bits (101), Expect = 5e-05
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +2
Query: 66 NPNPPSPPLQDDSPLVGPPP------PPPHHEADDDDGEMIGPPPPPPG 108
NP PP PP +P PPP PPPH M PPPPPG
Sbjct: 131 NPPPPGPPRDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQPPPPPG 277
Score = 35.4 bits (80), Expect = 0.013
Identities = 21/50 (42%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPP----PHHEADDDDGEMIGPPPPPPG 108
PP P PP PP + P GPP PP P D PPPPP G
Sbjct: 50 PPGPPGPP-PPGYHNPPPPGPPQPPGYYNPPPPGPPRDPYAPAPPPPPFG 196
Score = 33.9 bits (76), Expect = 0.037
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = +2
Query: 64 PKNPNPPSPPLQDDSPLVGPPPP----PPHHEADDDDGEMIGPPPPPP 107
P P PP PP GPPPP PP G PPP PP
Sbjct: 35 PPQPGPPGPP--------GPPPPGYHNPPPPGPPQPPGYYNPPPPGPP 154
Score = 32.7 bits (73), Expect = 0.082
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPP 106
PP PPSPP + PPPPP GP PPP
Sbjct: 206 PPPPHGPPSPP---PPAMFYQPPPPPGPPGPPQPPHPPGPGPPP 328
Score = 32.7 bits (73), Expect = 0.082
Identities = 21/53 (39%), Positives = 23/53 (42%), Gaps = 6/53 (11%)
Frame = +2
Query: 62 RPPKNPNPPSPPL--QDDSPLVGPPPPPP---HHEADDDDGEMIGPPPP-PPG 108
R P P PP PP P GPP PPP ++ G P PP PPG
Sbjct: 155 RDPYAPAPPPPPFGHHHPPPPHGPPSPPPPAMFYQPPPPPGPPGPPQPPHPPG 313
Score = 31.2 bits (69), Expect = 0.24
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 62 RPPKNPNPPSPPLQDDSPLVGPPP 85
+PP P PP PP P GPPP
Sbjct: 257 QPPPPPGPPGPPQPPHPPGPGPPP 328
>BI420016
Length = 559
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/69 (31%), Positives = 29/69 (41%)
Frame = +2
Query: 41 PTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMI 100
P + P+ + P+ +C H P P P S P SP + PPP PP +
Sbjct: 143 P*APPEPQTLKKPTTQCTHGGNPSPKPVPASTPSPPSSPTLTPPPSPPSPTPNAPLSPSS 322
Query: 101 GPPPPPPGS 109
P PP P S
Sbjct: 323 PPSPPTPPS 349
Score = 35.0 bits (79), Expect = 0.017
Identities = 25/82 (30%), Positives = 32/82 (38%), Gaps = 4/82 (4%)
Frame = +2
Query: 30 ETIHKATRRSVPTSNP--KTTSDDFPSKECLHSIRPPKNPNPPSP--PLQDDSPLVGPPP 85
+T+ K T + NP K PS ++ PP +P P+P PL SP P P
Sbjct: 164 QTLKKPTTQCTHGGNPSPKPVPASTPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTP 343
Query: 86 PPPHHEADDDDGEMIGPPPPPP 107
P P PP P P
Sbjct: 344 PSP-------------PPSPAP 370
Score = 30.4 bits (67), Expect = 0.41
Identities = 17/51 (33%), Positives = 22/51 (42%)
Frame = +2
Query: 35 ATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPP 85
A+ S P+S T PS + P P+PP+PP SP P P
Sbjct: 230 ASTPSPPSSPTLTPPPSPPSPTPNAPLSPSSPPSPPTPPSPPPSPAPNPTP 382
Score = 30.4 bits (67), Expect = 0.41
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Frame = +3
Query: 10 GVRAEFPLSFGKQSKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNP-N 68
G+R + P L + R + T P++ P + + P + P
Sbjct: 204 GIRLQSPFPHPLPRHHPPQLSLLRPLLPRRLRT--PRSLPPLLPRRLLRRLLLPLRLPIR 377
Query: 69 PPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
PP P PL+ PPPPP + PPPPP
Sbjct: 378 PPLPLALRHLPLL*PPPPPRCPLLPPSSLRPLPLPPPPP 494
Score = 29.6 bits (65), Expect = 0.70
Identities = 13/29 (44%), Positives = 14/29 (47%)
Frame = +3
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHE 91
PP P P P PL PPPPPP +
Sbjct: 420 PPPPPRCPLLPPSSLRPLPLPPPPPPRRQ 506
>CB829398
Length = 366
Score = 41.6 bits (96), Expect = 2e-04
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 69 PPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPPGSNFNDSEDEDNDSDQDELGN 128
PP PPL+ P PPPP P PPPPPP F +++ S++ E+G+
Sbjct: 3 PPLPPLKKIQPPSPPPPPSP-------------PPPPPPVEKFGIVKEDGTMSEEFEVGD 143
Score = 32.3 bits (72), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 58 LHSIRPPKNPNPPSPPLQDDSPLVGPPPPP 87
L I+PP P PPSPP PPPPP
Sbjct: 18 LKKIQPPSPPPPPSPP---------PPPPP 80
>BP043764
Length = 479
Score = 41.6 bits (96), Expect = 2e-04
Identities = 37/114 (32%), Positives = 46/114 (39%), Gaps = 3/114 (2%)
Frame = +3
Query: 23 SKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPL-- 80
+ S P K T + P SNPK T P + + P KNP S L + L
Sbjct: 135 NNSAAPFRRPLKTT--TTPPSNPKPTPK--PKPKPAPTSNPLKNPFKSSHALTNKLWLTS 302
Query: 81 -VGPPPPPPHHEADDDDGEMIGPPPPPPGSNFNDSEDEDNDSDQDELGNRFRIP 133
+ PPPPPP PPPPPP + E E + + NRFR P
Sbjct: 303 KLSPPPPPP-------------PPPPPPPLPPPERETEIAEDKGADDVNRFRQP 425
Score = 26.2 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 23 SKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSI-RPPKNPNPPSPPLQDDSPLV 81
S S TP + RR PT+ P ++ L I P +N NP P LQ S +
Sbjct: 79 SSSATPPPFPPPSNRRRTPTTPPLPSAAPSKPPPLLPPILNPHQNLNPNPPQLQTLSKIP 258
Query: 82 GPPPPP 87
P P
Sbjct: 259 SNPLMP 276
>TC18080 similar to GB|AAL90935.1|19699138|AY090274 AT3g18790/MVE11_17
{Arabidopsis thaliana;}, partial (24%)
Length = 585
Score = 41.6 bits (96), Expect = 2e-04
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -1
Query: 16 PLSFGKQSKSQTPLETIHKATRRSVPT---SNPKTTSDDFPSKECLHSIRPPKNPNPPSP 72
P S SQ+P H AT R+ T S P + S +PS P P+PP P
Sbjct: 240 PSSSFPAPSSQSPS---HPATARAPQTPSHSPPASPSSPYPSSS-------PPQPHPPPP 91
Query: 73 PLQDDSPLVGPPPPP 87
PL+ SP P PPP
Sbjct: 90 PLESPSPQPTPQPPP 46
Score = 34.7 bits (78), Expect = 0.022
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = -1
Query: 33 HKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEA 92
H T + P+S+ S PS + R P+ P+ SPP SP PP PH
Sbjct: 264 H*HTYSTAPSSSFPAPSSQSPSHPA--TARAPQTPSH-SPPASPSSPYPSSSPPQPH--- 103
Query: 93 DDDDGEMIGPPPPP 106
PPPPP
Sbjct: 102 ---------PPPPP 88
>AV427333
Length = 387
Score = 41.2 bits (95), Expect = 2e-04
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Frame = +3
Query: 28 PLETIHKATRRSVPTSNPKTTSDDFPSKEC-LHSIRPPKNPNPPSPPLQDDSPLVGP-PP 85
P + T S P + P T S F S HS PP +P PP P P P
Sbjct: 90 PSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRGHPSPPPSSPPPPSSHPFTP 269
Query: 86 PPPHHEADDDDGEMIGPPP---PPP 107
PPPH I PPP PPP
Sbjct: 270 PPPHVRPPPSPHHPITPPPHVRPPP 344
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/61 (40%), Positives = 29/61 (46%), Gaps = 9/61 (14%)
Frame = +3
Query: 59 HSIRPPKNP-NPPSPPLQDDSPLVGP------PPPPPHHEADDDDGEMIGPP--PPPPGS 109
H PP +P NPP+PP +P P PPPP H A G PP PPPP S
Sbjct: 75 HFPPPPSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRGHPSPPPSSPPPPSS 254
Query: 110 N 110
+
Sbjct: 255 H 257
Score = 32.0 bits (71), Expect = 0.14
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Frame = +3
Query: 41 PTSNPKTTSDDF--------PSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHH 90
P+S P +S F P H I PP + PP PPL P P P HH
Sbjct: 228 PSSPPPPSSHPFTPPPPHVRPPPSPHHPITPPPHVRPPPPPLP-------PSPSPNHH 380
>AU240151
Length = 286
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/50 (46%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 64 PKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPP-PPGSNFN 112
PK P PP P Q P GP P PP GPPPP PPG FN
Sbjct: 246 PKKPGPPGPGPQPGPP--GPGPQPPPGPPGPGPQPPPGPPPPGPPGPMFN 103
>TC11470
Length = 505
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/91 (24%), Positives = 41/91 (44%), Gaps = 16/91 (17%)
Frame = +3
Query: 229 VKGDMYIRDLKNTKGHITGLTCGEWHPKTKETILTSSEDGSLRIWD-------------- 274
V G +Y LK K H + +W P K + ++S+DG++++W+
Sbjct: 114 VGGPLYTLLLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSQ**C*FCLFAV 293
Query: 275 --VNDFTTQKQVWKIFTLLFFHGHFHFIFHL 303
V +T + + WK + H F F+F++
Sbjct: 294 SVVEIYTGRAKEWKQIDVQHPHSAFCFLFNI 386
>TC14338 similar to UP|Q9MAH5 (Q9MAH5) F12M16.16, partial (33%)
Length = 1751
Score = 40.4 bits (93), Expect = 4e-04
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = +3
Query: 27 TPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPP 86
+P +H+++ S P P T PS ++PP P PPSPP + V PP
Sbjct: 12 SPQRWLHRSSLASFPKPEP*T*---LPSSLAPSPLQPPP-PLPPSPPSLSSAATVPSPPY 179
Query: 87 PPHHEADDDDGEMIGPPPPPP 107
P A PP PPP
Sbjct: 180 PSPPAATSSPPPAPSPPAPPP 242
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/57 (36%), Positives = 23/57 (39%), Gaps = 10/57 (17%)
Frame = +2
Query: 62 RPPKNPN-PPS-----PPLQDDSPLVGPPPPPPH----HEADDDDGEMIGPPPPPPG 108
RPP N PPS PP P PP+ + A G M GPPP PG
Sbjct: 761 RPPPNAGGPPSNQGGFPPNNAGGPPSNQGGFPPNNAGGYPASPRPGNMPGPPPSNPG 931
Score = 27.7 bits (60), Expect = 2.7
Identities = 17/51 (33%), Positives = 20/51 (38%), Gaps = 4/51 (7%)
Frame = +3
Query: 41 PTSNPKTTSDDFPSKECLHSIRPPKNPNPP----SPPLQDDSPLVGPPPPP 87
P P PS ++ P P+PP SPP P PPPPP
Sbjct: 102 PLQPPPPLPPSPPSLSSAATVPSPPYPSPPAATSSPPPAPSPP--APPPPP 248
>AW428673
Length = 352
Score = 40.0 bits (92), Expect = 5e-04
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = +1
Query: 53 PSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
P K LHS PP PP+ P++ PPPP H +D I PPPP
Sbjct: 166 PPKPELHSPPPPVRRCPPNDRRCPPKPVLHSPPPPVHTSPPNDIPHPIHHSPPPP 330
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 39.7 bits (91), Expect = 7e-04
Identities = 20/46 (43%), Positives = 21/46 (45%)
Frame = -1
Query: 62 RPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
RPP P PP PP PL PPPPP+ PP PPP
Sbjct: 460 RPPPRPPPPYPPPPP*PPLPPYPPPPPYPPPPRPPPP*PPPPYPPP 323
Score = 33.1 bits (74), Expect = 0.063
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -1
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
PP P PP PP P PPP PP PP PPP
Sbjct: 388 PPPYPPPPRPPPP*PPPPYPPPP*PP-------------PPRPPP 293
Score = 32.0 bits (71), Expect = 0.14
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = -1
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
PP P PP PP + P PPP PP + P PPPP
Sbjct: 478 PP--PPPPRPPPRPPPPYPPPPP*PP-----------LPPYPPPP 383
Score = 29.6 bits (65), Expect = 0.70
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = -1
Query: 63 PPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPP 107
PP P PP PP P PPP PP PP PPP
Sbjct: 358 PPP*PPPPYPP-----PP*PPPPRPP-------------PPAPPP 278
Score = 28.5 bits (62), Expect = 1.6
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Frame = -1
Query: 63 PPKNPNPP---SPPLQDDSPLVGPP-PPPPHHEADDDDGEMIGPPPPPP 107
PP P PP PP P PP PPPP PPPP P
Sbjct: 394 PPPPPYPPPPRPPPP*PPPPYPPPP*PPPPR------------PPPPAP 284
Score = 26.6 bits (57), Expect = 5.9
Identities = 19/67 (28%), Positives = 22/67 (32%)
Frame = -1
Query: 41 PTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMI 100
P P +P + P P P PP + P PP PPP
Sbjct: 466 PPRPPPRPPPPYPPPPP*PPLPPYPPPPPYPPPPRPPPP*PPPPYPPP------------ 323
Query: 101 GPPPPPP 107
P PPPP
Sbjct: 322 -P*PPPP 305
>TC13505 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (7%)
Length = 359
Score = 39.7 bits (91), Expect = 7e-04
Identities = 23/61 (37%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Frame = +1
Query: 46 KTTS-DDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPP 104
KTTS D+ C + PP +P PPS P +P PPPP G PPP
Sbjct: 112 KTTSKDEVKCTPCELASPPPPSPPPPSQP--PPTPTSNCPPPPSPPSGGGGGGSYYSPPP 285
Query: 105 P 105
P
Sbjct: 286 P 288
Score = 26.6 bits (57), Expect = 5.9
Identities = 10/24 (41%), Positives = 12/24 (49%)
Frame = +3
Query: 289 TLLFFHGHFHFIFHLWLGEENPSN 312
T+LF HG F + W G P N
Sbjct: 45 TVLFHHGGFPCCYCCWFGRSEPEN 116
Score = 26.2 bits (56), Expect = 7.7
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Frame = -1
Query: 83 PPPPPPHHEA----------DDDDGEMIGPPPPPP 107
PPPPP +A + GE PPPPPP
Sbjct: 350 PPPPPXPVDAGGGGDE*TY*EGGGGE**DPPPPPP 246
>TC8260 similar to UP|Q94ES8 (Q94ES8) Nodule extensin (Fragment), partial
(79%)
Length = 1017
Score = 39.3 bits (90), Expect = 9e-04
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +3
Query: 39 SVPTSNPKTTSDDFPSKECLHSIRPP-KNPNP----PSPPLQDDSPLV-GPPPPPPHHEA 92
S P PK S P +HS PP + P+P P PP + P+ PPPPPPH
Sbjct: 117 SSPPPPPKPYSYHSPPPP-VHSPPPPYEKPHPVYHSPPPPYEKPHPVYHSPPPPPPHKPY 293
Query: 93 DDDDGEMIGPPPPP 106
+ PPPPP
Sbjct: 294 -----KYPSPPPPP 320
Score = 37.0 bits (84), Expect = 0.004
Identities = 22/62 (35%), Positives = 28/62 (44%), Gaps = 6/62 (9%)
Frame = +3
Query: 59 HSIRPP-KNPNP---PSPPLQDDSPLVGPPPPPPHHEADDDDGEMI--GPPPPPPGSNFN 112
HS PP + P+P PP P P PPPP H+ + PPPPPP ++
Sbjct: 216 HSPPPPYEKPHPVYHSPPPPPPHKPYKYPSPPPPPHKYPHPHPHPVYHSPPPPPPKKHYK 395
Query: 113 DS 114
S
Sbjct: 396 YS 401
Score = 34.7 bits (78), Expect = 0.022
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +3
Query: 53 PSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPP---PHHEADDDDGEMIGPPPPPP 107
P HS PP + P PP + P+ PPPP PH PPPPPP
Sbjct: 135 PKPYSYHS--PPPPVHSPPPPYEKPHPVYHSPPPPYEKPHPVYH-------SPPPPPP 281
Score = 32.7 bits (73), Expect = 0.082
Identities = 23/93 (24%), Positives = 31/93 (32%), Gaps = 8/93 (8%)
Frame = +3
Query: 21 KQSKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPN--------PPSP 72
K K +P +H +P +P ++ PP P+ PP P
Sbjct: 384 KHYKYSSPPPPVHTYPHPHPVYHSPPPPVHTYPHPHPVYHSPPPPPPHEKPYKYASPPPP 563
Query: 73 PLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPP 105
P+ V PPPP H PPPP
Sbjct: 564 PVHTYPHPVYHSPPPPVHSPPPPHYYYKSPPPP 662
Score = 30.8 bits (68), Expect = 0.31
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Frame = +3
Query: 53 PSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPP---------------PPHHEADDDDG 97
P + H P +PP PP + PPPP PP H
Sbjct: 315 PPHKYPHPHPHPVYHSPPPPPPKKHYKYSSPPPPVHTYPHPHPVYHSPPPPVHTYPHPHP 494
Query: 98 EMIGPPPPPP 107
PPPPPP
Sbjct: 495 VYHSPPPPPP 524
>AV415539
Length = 419
Score = 39.3 bits (90), Expect = 9e-04
Identities = 23/51 (45%), Positives = 25/51 (48%)
Frame = +3
Query: 59 HSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPPPPPGS 109
HS P +P PP PPL PL PPPPPPH P PPPG+
Sbjct: 51 HSHLP--HPLPPPPPL----PLAPPPPPPPH------------PTRPPPGN 149
Score = 32.3 bits (72), Expect = 0.11
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Frame = +2
Query: 41 PTSNPKTTSDDFPSKECLHSIRPPKN---------PNPPSPPLQDDSPLVGPPPPPPHHE 91
P ++P +S PS+ + P + P P SPPL SP PPPPP
Sbjct: 56 PPTSPSPSSSTSPSRSSSPAAAPSHSATSRQSTASPCPSSPPL--FSPEHSPPPPP---R 220
Query: 92 ADDDDGEMIGPPPPPPGSNFNDSEDE 117
+ G P P GS+ + SE +
Sbjct: 221 SATRAGSGAAPKPLLNGSSVSPSEPD 298
>TC12859 weakly similar to UP|CAE55354 (CAE55354) PE-PGRS FAMILY PROTEIN,
partial (5%)
Length = 528
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 27/60 (44%), Gaps = 11/60 (18%)
Frame = -2
Query: 63 PPKNPNPPSPPLQDDSPL--VGPP---------PPPPHHEADDDDGEMIGPPPPPPGSNF 111
PP P PP+PP Q SP GPP P PP D + PPPPP SNF
Sbjct: 197 PPFRPTPPAPP-QASSPFSSFGPPVRPGAPSFRPAPPGRFNDPS----VPPPPPPQSSNF 33
Score = 31.2 bits (69), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 38 RSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPS----PPLQDDSPLVGPPPPP 87
R P + P+ +S S PP P PS PP + + P V PPPPP
Sbjct: 188 RPTPPAPPQASSP-------FSSFGPPVRPGAPSFRPAPPGRFNDPSVPPPPPP 48
>TC19908 similar to GB|CAA60022.1|791150|VURNEXT26 extensin-like protein
{Vigna unguiculata;} , partial (49%)
Length = 472
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 6/64 (9%)
Frame = +2
Query: 53 PSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPP------PPP 106
P ++ PP +P+PP P + P P PPPP+ PP PPP
Sbjct: 5 PPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSHSPPPPYVYKSPPP 184
Query: 107 PGSN 110
P S+
Sbjct: 185 PSSS 196
Score = 30.0 bits (66), Expect = 0.53
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +2
Query: 68 NPPSPPLQDDSPLVGPPPPPPHHEADDDDGEMIGPPP-----PPPGSN 110
+PP P + P P PPPP+ PPP PPP S+
Sbjct: 2 SPPPPYVYKSPPPPSPSPPPPYVYKSPPPPSPSPPPPYIYKSPPPPSH 145
Score = 29.6 bits (65), Expect = 0.70
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Frame = +2
Query: 53 PSKECLHSIRPPKNPNPPSPPLQDDSPLVG-PPP-------PPPHHEADDDDGEMIGPPP 104
P ++ PP +P+PP P + P PP PPP + + PP
Sbjct: 53 PPPPYVYKSPPPPSPSPPPPYIYKSPPPPSHSPPPPYVYKSPPPPSSSHPHHSYLYNSPP 232
Query: 105 PP 106
PP
Sbjct: 233 PP 238
>TC11354 similar to UP|CAE54480 (CAE54480) Alpha glucosidase II , partial
(6%)
Length = 583
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 1/96 (1%)
Frame = -1
Query: 16 PLSFGKQSKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQ 75
P S S S T + PT P S PS S P P + P
Sbjct: 343 PPSSPPMSPSPTATSPPTSSPNTHPPTPTPNP*SSPSPSTTTASSASPSTKTLPSTRPRP 164
Query: 76 -DDSPLVGPPPPPPHHEADDDDGEMIGPPPPPPGSN 110
+SP P PP I PPPPPP ++
Sbjct: 163 ASESPTSSSPSSPPPSSGSSVSPPRISPPPPPPSNS 56
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/76 (26%), Positives = 26/76 (33%)
Frame = -1
Query: 32 IHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQDDSPLVGPPPPPPHHE 91
I + RS +S P ++ S E P+P PP SP P P P
Sbjct: 472 IKRCVSRSSSSSAPPSSPGRKKSSETAIRPHSASEPDPAPPPPPPSSP---PMSPSPTAT 302
Query: 92 ADDDDGEMIGPPPPPP 107
+ PP P P
Sbjct: 301 SPPTSSPNTHPPTPTP 254
Score = 27.3 bits (59), Expect = 3.5
Identities = 18/74 (24%), Positives = 29/74 (38%)
Frame = -1
Query: 16 PLSFGKQSKSQTPLETIHKATRRSVPTSNPKTTSDDFPSKECLHSIRPPKNPNPPSPPLQ 75
P S G++ S+T + P + S+ P+ PP +P+P +
Sbjct: 430 PSSPGRKKSSETAIR--------------PHSASEPDPAPPPPPPSSPPMSPSPTATSPP 293
Query: 76 DDSPLVGPPPPPPH 89
SP PP P P+
Sbjct: 292 TSSPNTHPPTPTPN 251
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,244,243
Number of Sequences: 28460
Number of extensions: 188136
Number of successful extensions: 6437
Number of sequences better than 10.0: 664
Number of HSP's better than 10.0 without gapping: 2493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4239
length of query: 316
length of database: 4,897,600
effective HSP length: 90
effective length of query: 226
effective length of database: 2,336,200
effective search space: 527981200
effective search space used: 527981200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC146819.11